Positive Effects of Bacterial Diversity on Ecosystem Functioning Driven by Complementarity Effects in a Bioremediation Context

PLoS ONE

Volumn 8, Issue 9, 2013, Pages

  Venail, Patrick A ^a,b   Vives, Martha J ^a  

^a UNIVERSIDAD DE LOS ANDES   (Colombia)

^b UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; PETROLEUM;

ALLOCHTHONOUS BACTERIA; ARTICLE; AUTOCHTHONOUS BACTERIA; BACTERIAL STRAIN; BACTERIUM CONTAMINATION; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BIOREMEDIATION; CHEMICAL COMPOSITION; ECOSYSTEM; ENVIRONMENTAL IMPACT ASSESSMENT; ENZYMATIC DEGRADATION; ENZYME ACTIVITY; MICROBIAL DIVERSITY; MICROBIOLOGICAL PARAMETERS; NONHUMAN; ORGANISMAL INTERACTION; ORGANISMS BY HABITAT; POPULATION DENSITY; SPECIES COMPARISON;

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; BIODIVERSITY; ECOSYSTEM;

EID: 84883423388     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0072561     Document Type: Article

References (38)

1. Hooper DU, Chapin FS III, Ewel JJ, Hector A, Inchausti P, et al. (2005) Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecological Monographs 75: 3-35.
2. Cardinale BJ, Duffy E, Gonzalez A, Hooper DU, Perrings C, et al. (2012) Biodiversity loss and its impact on humanity. Nature 486: 59-67.
3. Naeem S, Bunker DE, Hector A, Loreau M, Perrings C (2009) Biodiversity Ecosystem Functioning and Human Wellbeing: An Ecological and Economic Perspective. Oxford University Press Oxford.
4. Balvanera P, Pfisterer AB, Buchmann N, He J-S, Nakashizuka T, et al. (2006) Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Ecology Letters 9: 1146-1156.
5. Cardinale BJ, Matulich KL, Hooper DU, Byrnes JE, Duffy E, et al. (2011) The functional role of producer diversity in ecosystems. American Journal of Botany 98: 1-21.
6. Loreau M, Hector A, (2001) Partitioning selection and complementarity in biodiversity experiments. Nature 412: 72-76.
7. Falkowski PG, Fenchel T, Delong EF, (2008) The microbial engines that drive Earth's biogeochemical cycles. Science 320: 1034-1039.
8. van der Heijden MGA, Bardgett RD, van Straalen NM, (2008) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters 11: 296-310.
9. Bell T, Newman JA, Silverman BW, Turner SL, Lilley AK, (2005) The contribution of species richness and composition to bacterial services. Nature 436: 1157-1160.
10. Jiang L, (2007) Negative selection effects suppress relationships between bacterial diversity and ecosystem functioning. Ecology 88: 1075-1085.
11. Salles JF, Poly F, Schmid B, Le Roux X (2009) Community niche predicts the functioning of denitrifying bacterial assemblages. Ecology 90, 3324-3332.
12. Langenheder S, Bulling MT, Solan M, Prosser JI, (2010) Bacterial biodiversity-ecosystem functioning relations are modified by environmental complexity. Plos One 5: e10834.
13. Bouvier T, Venail P, Pommier T, Bouvier C, Barbera C, et al. (2012) Contrasted effects of diversity and immigration on ecological insurance in marine bacterioplankton communities. Plos One 7: e37620.
14. Gravel D, Bell T, Barbera C, Bouvier T, Pommier T, et al. (2011) Experimental niche evolution alters the strength of the diversity-productivity relationship. Nature 469: 89-94.
15. Jousset A, Schmid B, Scheu S, Eisenhauer N, (2011) Genotypic richness and dissimilarity opposingly affect ecosystem functioning. Ecology Letters 14: 537-245.
16. Venail PA, MacLean RC, Meinard CN, Mouquet N, (2010) Dispersal scales up the biodiversity-productivity relationship in an experimental source-sink metacommunity. Proceedings of the Royal Society of London Series B: Biological Sciences 277: 2339-2345.
17. Becker J, Eisenhauer N, Scheu S, Jousset A, (2012) Increasing antagonistic interactions cause bacterial communities to collapse at high diversity. Ecology Letters 15: 468-474.
18. Swannell RPJ, Lee K, McDonagh M, (1996) Field evaluations or marine oil spill bioremediation. Microbiological Reviews 60: 342-365.
19. Boopathy R, (2000) Factors limiting bioremediation technologies. Bioresource Technology 74: 63-67.
20. Gentry TJ, Rensing C, Pepper IL, (2004) New approaches for bioaugmentation as a remediation technology. Critical Reviews in Environmental Science and Technology 34: 447-494.
21. Alisi C, Musella R, Tasso F, Ubaldi C, Manzo S, et al. (2009) Bioremediation of diesel oil in a co-contaminated soil by bioaugmentation with a microbial formula tailored with native strains selected from heavy metals resistance. Science of the Total Environment 407: 3024-3032.
22. Van Hamme JD, Singh A, Ward OP, (2003) Recent advances in petroleum microbiology. Microbiology and Molecular Biology Reviews 67: 503-549.
23. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
24. Viñas M, Grifoll M, Sabaté J, Solanas AM, (2002) Biodegradation of a crude oil by three microbial consortia of different origins and metabolic capabilities. Journal of Industrial Microbiology & Biotechnology 28: 252-260.
25. McKew BA, Coulon F, Yakimov MM, Denaro R, Genovese M, et al. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology 9: 1562-1571.
26. Cardinale BJ, Wright JP, Cadotte MW, Carroll IT, Hector A, et al. (2007) Impacts of plant diversity on biomass production increase through time because of species complementarity. Proceedings of the National Academy of Science 104: 18123-18128.
27. Singer AC, van Der Gast C, Thompson IP, (2005) Perspectives and vision for strain selection in bioaugmentation. Trends in Biotechnology 23: 74-77.
28. Cardinale BJ, Srivastava DS, Duffy E, Wright JP, Downing AL, et al. (2006) Effects of biodiversity on the functioning of trophic groups and ecosystems. Nature 443: 989-992.
29. Magot M, Ollivier B, Patel BKC, (2000) Microbiology of petroleum reservoirs. Antoine van Leeuwenhoek 77: 103-116.
30. Li H, Yang S-Z, Mu B-Z, Rong Z-F, Zhang J, (2007) Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield. FEMS Microbiology Ecology 60: 74-84.
31. Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W, (2001) Bioaugmentation of soils by increasing microbial richness: missing links. Environmental Microbiology 3: 649-657.
32. Thompson IP, van der Gast CJ, Ciric L, Singer AC, (2005) Bioaugmentation for bioremediation: the challenge of strain selection. Environmental Microbiology 7: 909-915.
33. Leahy JG, Colwell RR, (1990) Microbial degradation of hydrocarbons in the environment. Microbiology Reviews 54: 305-315.
34. Mishra S, Jyot J, Kuhad RC, Lal B, (2001) Evaluation of inoculums addition to stimulate in situ bioremediation of oily-sludge-contaminated soil. Applied and Environmental Microbiology 67: 1675-1681.
35. Flynn DFB, Mirotchnick N, Jain M, Palmer MI, Naeem S, (2011) Functional and phylogenetic diversity as predictors of biodiversity-ecosystem-function relationships. Ecology 92: 1573-1581.
36. Cadotte MW, Dinnage R, Tilman D, (2012) Phylogenetic diversity promotes ecosystem stability. Ecology 93: S223-S233.
37. Rahman KSM, Rahman T, Lakshmanaperumalsamy P, Banat IM, (2002) Occurrence of crude oil degrading bacteria in gasoline and diesel station soils. Journal of Basic Microbiology 42: 284-291.
38. Machín-Ramirez C, Okoh AI, Morales D, Mayolo-Deloisa K, Quintero R, et al. (2008) Slurry-phase biodegradation of weathered oily sludge waste. Chemosphere 70, 737-744.