Weighted shape-based averaging with neighborhood prior model for multiple atlas fusion-based medical image segmentation

IEEE Signal Processing Letters

Volumn 20, Issue 11, 2013, Pages 1036-1039

  Gorthi, Subrahmanyam ^a   Bach Cuadra, Meritxell ^a,b   Tercier, Pierre Alain ^c   Allal, Abdelkarim S ^c   Thiran, Jean Philippe ^a,b  

^a EPFL   (Switzerland)

^b University of Lausanne   (Switzerland)

^c Service de Radio oncologic   (Switzerland)

Author keywords

Atlas based segmentation; label fusion; medical imaging; MRF; SBA

Indexed keywords

ATLAS-BASED SEGMENTATION; AUTOMATED SEGMENTATION; LABEL FUSIONS; MARKOV RANDOM FIELDS; MRF; SBA; SHAPE-BASED AVERAGING; SIMILARITY INFORMATIONS;

COMPUTERIZED TOMOGRAPHY; MARKOV PROCESSES; MEDICAL IMAGING;

MEDICAL IMAGE PROCESSING;

EID: 84883379224     PISSN: 10709908     EISSN: None     Source Type: Journal    
DOI: 10.1109/LSP.2013.2279269     Document Type: Article

References (11)

1. T. Rohlfing and C. Maurer, "Shape-based averaging, " IEEE Trans. Image Process., vol. 16, no. 1, pp. 153-161, 2007.
2. X. Artaechevarria, A. Munoz-Barrutia, and C. Ortiz-de Solorzano, "Combination strategies in multi-atlas image segmentation: Application to brain mr data, " IEEE Trans. Med. Imag., vol. 28, no. 8, pp. 1266-1277, 2009.
3. M. Sabuncu, B. Yeo, K. Van Leemput, B. Fischl, and P. Golland, "A generative model for image segmentation based on label fusion, " IEEE Trans. Med. Imag., vol. 29, no. 10, pp. 1714-1729, 2010.
4. I. Îsgum, M. Staring, A. Rutten, M. Prokop, M. Viergever, and B. van Ginneken, "Multi-atlas-based segmentation with local decision fusion-Application to cardiac and aortic segmentation in CT scans, " IEEE Trans. Med. Imag., vol. 28, no. 7, pp. 1000-1010, 2009.
5. S. K. Warfield, K. H. Zou, and W. M. Wells, "Simultaneous truth and performance level estimation (STAPLE): An algorithm for the validation of image segmentation, " IEEE Trans. Med. Imag., vol. 23, no. 7, pp. 903-921, 2004.
6. S. Gorthi, M. Bach Cuadra, U. Schick, P.-A. Tercier, A. S. Allal, and J.-P. Thiran, "Fusion of multi-atlas segmentations with spatial distribution modeling, " in MICCAI Workshop on Multi-Atlas Labeling and Statistical Fusion, 2011.
7. F. van der Lijn, T. den Heijer, M. Breteler, and W. Niessen, "Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts, " NeuroImage, vol. 43, no. 4, pp. 708-720, 12 2008.
8. S. Gorthi, M. Bach-Cuadra, U. Schick, P.-A. Tercier, A. S. Allal, and J.-P. Thiran, "Evaluation of atlas fusion strategies for segmentation of head and neck lymph nodes for radiotherapy planning, " in Proc. IEEE Int. Symp. Biomedical Imaging, 2012.
9. K. Pohl, J. Fisher, M. Shenton, R.McCarley, W. Grimson, R. Kikinis, and W. Wells, "Logarithm odds maps for shape representation, " in Medical Image Computing and Computer-Assisted Intervention, 2006, pp. 955-963.
10. M. Cardoso, G.Winston, M. Modat, S. Keihaninejad, J. Duncan, and S. Ourselin, "Geodesic shape-based averaging, " in Medical Image Computing and Computer-Assisted Intervention, 2012, pp. 26-33.
11. S. Gorthi, V. Duay, X. Bresson, M. Bach Cuadra, S. Castro, F. Javier, C. Pollo, A. S. Allal, and J.-P. Thiran, "Active deformation fields: Dense deformation field estimation for atlas-based segmentation using the active contour framework, " Med. Image Anal., vol. 15, no. 6, pp. 787-800, 2011.