Molecular tracing of classical swine fever viruses isolated from wild boars and pigs in France from 2002 to 2011

Veterinary Microbiology

Volumn 166, Issue 3-4, 2013, Pages 631-638

  Simon, Gaëlle ^a,b   Le Dimna, Mireille ^a,b   Le Potier, Marie Frédérique ^a,b   Pol, Françoise ^a,b  

^a FRENCH AGENCY FOR FOOD   (France)

^b UNIVERSITÉ EUROPÉENNE DE BRETAGNE   (France)

Author keywords

Classical swine fever virus; France; Molecular epidemiology; Phylogenetic analysis; Pig; Wild boar

Indexed keywords

ARTICLE; CONTROLLED STUDY; FRANCE; GENETIC ANALYSIS; GENOTYPE; GEOGRAPHIC DISTRIBUTION; GERMANY; MALE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PESTIVIRUS; PHYLOGENETIC TREE; PHYLOGENY; SWINE; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN; WILD BOAR;

CLASSICAL SWINE FEVER VIRUS; SUIDAE; SUS SCROFA; SUS SCROFA DOMESTICA;

CLASSICAL SWINE FEVER VIRUS; FRANCE; MOLECULAR EPIDEMIOLOGY; PHYLOGENETIC ANALYSIS; PIG; WILD BOAR;

ANIMALS; ANIMALS, WILD; BASE SEQUENCE; CLASSICAL SWINE FEVER; CLASSICAL SWINE FEVER VIRUS; DISEASE OUTBREAKS; FRANCE; GERMANY; MOLECULAR SEQUENCE DATA; PHYLOGENY; SUS SCROFA; SWINE; VIRAL PROTEINS;

EID: 84883286401     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2013.06.032     Document Type: Article

References (21)

1. Anonymous Council Directive 2001/89/EC of 23 October 2001 on Community measures for the control of classical swine fever. Off. J. Eur. Commun. 2001, 316:5-35.
2. Anonymous Commission Decision 2002/106/EC of 1 February 2002 approving a Diagnostic Manual establishing diagnostic procedures, sampling methods and criteria for evaluation of the laboratory tests for the confirmation of classical swine fever. Off. J. Eur. Commun. 2002, 39:71-88.
3. Anonymous Commission Decision 2004/832/EC of 3 December 2004 approving the plans for the eradication of classical swine fever in feral pigs and the emergency vaccination of such pigs in the Northern Vosges, France. Off. J. Eur. Commun. 2004, 359:62-64.
4. Anonymous Commission Implementing Decision 2011/743/EU of 14 November 2011 amending Decision 2008/855/EC as regards animal health control measures relating to classical swine fever in France. Off. J. Eur. Commun. 2011, 297:69.
5. Blome S., Gabriel C., Staubach C., Leifer I., Strebelow G., Beer M. Genetic differentiation of infected from vaccinated animals after implementation of an emergency vaccination strategy against classical swine fever in wild boar. Vet. Microbiol. 2011, 153:373-376.
6. Depner K.R., Strebelow G., Staubach C., Kramer M., Teuffert J., Bötcher L., Hoffmann B., Beer M., Greiser-Wilke I., Mettenleiter T. Case report: the significance of genotyping for the epidemiological tracing of classical swine fever (CSF). Dtsch. Tierarztl. Wochenschr. 2006, 113:159-162.
7. Fritzemeier J., Teuffert J., Greiser-Wilke I., Staubach C., Schluter H., Moennig V. Epidemiology of classical swine fever in Germany in the 1990s. Vet. Microbiol. 2000, 77:29-41.
8. Greiser-Wilke I., Zimmermann B., Fritzemeier J., Floegel G., Moennig V. Structure and presentation of a World Wide Web database of CSF virus isolates held at the EU Reference Laboratory. Vet. Microbiol. 2000, 73:131-136.
9. Le Dimna M., Vrancken R., Koenen F., Bougeard S., Mesplede A., Hutet E., Kuntz-Simon G., Le Potier M.F. Validation of two commercial real-time RT-PCR kits for rapid and specific diagnosis of classical swine fever virus. J. Virol. Methods 2008, 147:136-142.
10. Leifer I., Depner K., Blome S., Le Potier M.-F., Le Dimna M., Beer M., Hoffmann B. Differentiation of C-strain "Riems" or CP7_E2alf vaccinated animals from animals infected by classical swine fever virus field strains using real-time RT-PCR. J. Virol. Methods 2009, 158:114-122.
11. Leifer I., Hoffmann B., Höper D., Bruun Rasmussen T., Blome S., Strebelow G., Höreth-Böntgen D., Staubach C., Beer M. Molecular epidemiology of current classical swine fever virus isolates of wild boar in Germany. J. Gen. Virol. 2010, 91:2687-2697.
12. Lowings P., Ibata G., Needham J., Paton D. Classical swine fever virus diversity and evolution. J. Gen. Virol. 1996, 77:1311-1321.
13. Mc Goldrick A., Bensaude E., Ibata G., Sharp G., Paton D.J. Closed one-tube reverse transcription nested polymerase chain reaction for the detection of pestiviral RNA with fluorescent probes. J. Virol. Methods 1999, 79:85-95.
14. Paton D.J., Mcgoldrick A., Greiserwilke I., Parchariyanon S., Song J.Y., Liou P.P., Stadejek T., Lowings J.P., Bjorklund H., Belak S. Genetic typing of classical swine fever virus. Vet. Microbiol. 2000, 73:137-157.
15. Pol F., Rossi S., Mesplede A., Kuntz-Simon G., Le Potier M.-F. Two outbreaks of classical swine fever in wild boar in France. Vet. Rec. 2008, 162:811-816.
16. Postel A., Schmeiser S., Perera C.L., Rodríguez L.J., Frias-Lepoureau M.T., Becher P. Classical swine fever virus isolates from Cuba form a new subgenotype 1.4. Vet. Microbiol. 2013, 161:334-338.
17. Postel A., Schmeiser S., Bernau J., Meindl-Boehmer A., Pridotkas G., Dirbakova Z., Mojzis M., Becher P. Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences. Vet. Res. 2012, 43:50.
18. Rossi S., Artois M., Pontier D., Crucière C., Hars J., Barrat J., Pacholek X., Fromont E. Long-term monitoring of classical swine fever in wild boar (Sus scrofa sp.) using serological data. Vet. Res. 2005, 36:27-42.
19. Rossi S., Pol F., Forot B., Masse-provin N., Rigaux S., Bronner A., Le Potier M.F. Preventive vaccination contributes to control classical swine fever in wild boar (Sus scrofa sp.). Vet. Microbiol. 2010, 142:99-107.
20. Tamura K., Peterson T., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method. Mol. Biol. Evol. 2011, 28:2731-2739.
21. Wonnemann H., Floegel-Niesmann G., Moennig V., Greiser-Wilke I. Genetic typing of German isolates of classical swine fever virus. Dtsch. Tierarztl. Wochenschr. 2001, 108:252-256.