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Volumn 8133 LNCS, Issue , 2013, Pages 260-273

QGramProjector: Q-gram projection for indexing highly-similar strings

Author keywords

k mer; large sequences; positional q grams; referential compression; similarity

Indexed keywords

COMMODITY HARDWARE; COMPUTATIONAL BIOLOGY; K-MER; LARGE SEQUENCES; Q-GRAMS; SEQUENCE ANALYSIS; SIMILARITY; STATISTICAL NATURAL LANGUAGE PROCESSING;

EID: 84883281650     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-40683-6_20     Document Type: Conference Paper
Times cited : (2)

References (21)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium. October
    • 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature, 467(7319), 1061-1073 (October 2010)
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1061-1073
  • 3
    • 85029488480 scopus 로고
    • Fast and practical approximate string matching
    • Apostolico, A., Galil, Z., Manber, U., Crochemore, M. (eds.) CPM 1992. Springer, Heidelberg
    • Baeza-Yates, R.A., Perleberg, C.H.: Fast and practical approximate string matching. In: Apostolico, A., Galil, Z., Manber, U., Crochemore, M. (eds.) CPM 1992. LNCS, vol. 644, pp. 185-192. Springer, Heidelberg (1992)
    • (1992) LNCS , vol.644 , pp. 185-192
    • Baeza-Yates, R.A.1    Perleberg, C.H.2
  • 4
    • 84863109054 scopus 로고    scopus 로고
    • Compressed string dictionary look-up with edit distance one
    • Kärkkäinen, J., Stoye, J. (eds.) CPM 2012. Springer, Heidelberg
    • Belazzougui, D., Venturini, R.: Compressed string dictionary look-up with edit distance one. In: Kärkkäinen, J., Stoye, J. (eds.) CPM 2012. LNCS, vol. 7354, pp. 280-292. Springer, Heidelberg (2012)
    • (2012) LNCS , vol.7354 , pp. 280-292
    • Belazzougui, D.1    Venturini, R.2
  • 5
    • 80054918493 scopus 로고    scopus 로고
    • Robust Relative Compression of Genomes with Random Access
    • September
    • Deorowicz, S., Grabowski, S.: Robust Relative Compression of Genomes with Random Access. Bioinformatics (September 2011)
    • (2011) Bioinformatics
    • Deorowicz, S.1    Grabowski, S.2
  • 7
    • 84883296101 scopus 로고    scopus 로고
    • String algorithms and data structures
    • abs/0801.2378
    • Ferragina, P.: String algorithms and data structures. CoRR, abs/0801.2378 (2008)
    • (2008) CoRR
    • Ferragina, P.1
  • 8
    • 30544432152 scopus 로고    scopus 로고
    • Indexing compressed text
    • Ferragina, P., Manzini, G.: Indexing compressed text. J. ACM 52(4), 552-581 (2005)
    • (2005) J. ACM , vol.52 , Issue.4 , pp. 552-581
    • Ferragina, P.1    Manzini, G.2
  • 9
    • 84863090446 scopus 로고    scopus 로고
    • Speeding up q-gram mining on grammar-based compressed texts
    • Kärkkäinen, J., Stoye, J. (eds.) CPM 2012. Springer, Heidelberg
    • Goto, K., Bannai, H., Inenaga, S., Takeda, M.: Speeding up q-gram mining on grammar-based compressed texts. In: Kärkkäinen, J., Stoye, J. (eds.) CPM 2012. LNCS, vol. 7354, pp. 220-231. Springer, Heidelberg (2012)
    • (2012) LNCS , vol.7354 , pp. 220-231
    • Goto, K.1    Bannai, H.2    Inenaga, S.3    Takeda, M.4
  • 10
    • 84876408746 scopus 로고    scopus 로고
    • On compressing and indexing repetitive sequences
    • Kreft, S., Navarro, G.: On compressing and indexing repetitive sequences. Theor. Comput. Sci. 483, 115-133 (2013)
    • (2013) Theor. Comput. Sci. , vol.483 , pp. 115-133
    • Kreft, S.1    Navarro, G.2
  • 13
    • 0345566149 scopus 로고    scopus 로고
    • A guided tour to approximate string matching
    • Navarro, G.: A guided tour to approximate string matching. ACM Comput. Surv. 33(1), 31-88 (2001)
    • (2001) ACM Comput. Surv. , vol.33 , Issue.1 , pp. 31-88
    • Navarro, G.1
  • 14
    • 84871656313 scopus 로고    scopus 로고
    • Indexing highly repetitive collections
    • Arumugam, S., Smyth, B. (eds.) IWOCA 2012. Springer, Heidelberg
    • Navarro, G.: Indexing highly repetitive collections. In: Arumugam, S., Smyth, B. (eds.) IWOCA 2012. LNCS, vol. 7643, pp. 274-279. Springer, Heidelberg (2012)
    • (2012) LNCS , vol.7643 , pp. 274-279
    • Navarro, G.1
  • 16
    • 78449285802 scopus 로고    scopus 로고
    • CST++
    • Chavez, E., Lonardi, S. (eds.) SPIRE 2010. Springer, Heidelberg
    • Ohlebusch, E., Fischer, J., Gog, S.: CST++. In: Chavez, E., Lonardi, S. (eds.) SPIRE 2010. LNCS, vol. 6393, pp. 322-333. Springer, Heidelberg (2010)
    • (2010) LNCS , vol.6393 , pp. 322-333
    • Ohlebusch, E.1    Fischer, J.2    Gog, S.3
  • 18
    • 0038238644 scopus 로고    scopus 로고
    • Application of lempel-ziv factorization to the approximation of grammar-based compression
    • Rytter, W.: Application of lempel-ziv factorization to the approximation of grammar-based compression. Theor. Comput. Sci. 302(1-3), 211-222 (2003)
    • (2003) Theor. Comput. Sci. , vol.302 , Issue.1-3 , pp. 211-222
    • Rytter, W.1
  • 19
    • 84947737449 scopus 로고
    • On using q-gram locations in approximate string matching
    • Spirakis, P.G. (ed.) ESA 1995. Springer, Heidelberg
    • Sutinen, E., Tarhio, J.: On using q-gram locations in approximate string matching. In: Spirakis, P.G. (ed.) ESA 1995. LNCS, vol. 979, pp. 327-340. Springer, Heidelberg (1995)
    • (1995) LNCS , vol.979 , pp. 327-340
    • Sutinen, E.1    Tarhio, J.2
  • 21
    • 68249140383 scopus 로고    scopus 로고
    • The 1001 Genomes Project for Arabidopsis thaliana
    • Weigel, D., Mott, R.: The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 10(5), 107+ (2009)
    • (2009) Genome Biology , vol.10 , Issue.5 , pp. 107
    • Weigel, D.1    Mott, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.