QTL mapping of stalk bending strength in a recombinant inbred line maize population

Theoretical and Applied Genetics

Volumn 126, Issue 9, 2013, Pages 2257-2266

  Hu, Haixiao ^a,b   Liu, Wenxin ^a   Fu, Zhiyi ^a   Homann, Linda ^b   Technow, Frank ^b   Wang, Hongwu ^c   Song, Chengliang ^a   Li, Shitu ^a   Melchinger, Albrecht E ^b   Chen, Shaojiang ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF HOHENHEIM   (Germany)

^c INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ARCHITECTURE; GENETIC VARIANCE; GENOMIC PREDICTIONS; HIGH FREQUENCY HF; LODGING RESISTANCE; PREDICTION ACCURACY; QUANTITATIVE TRAIT LOCUS; RECOMBINANT INBRED LINES;

BENDING STRENGTH; BINS; MAPPING;

PLANTS (BOTANY);

ZEA MAYS;

ARTICLE; CHROMOSOME MAP; CROSS BREEDING; GENETIC LINKAGE; GENETICS; GENOTYPE; MAIZE; MECHANICAL STRESS; METHODOLOGY; NEAR INFRARED SPECTROSCOPY; PHENOTYPE; PHYSIOLOGY; PLANT GENE; PLANT STEM; QUANTITATIVE TRAIT LOCUS;

CHROMOSOME MAPPING; CROSSES, GENETIC; GENES, PLANT; GENETIC LINKAGE; GENOTYPE; PHENOTYPE; PLANT STEMS; QUANTITATIVE TRAIT LOCI; SPECTROSCOPY, NEAR-INFRARED; STRESS, MECHANICAL; ZEA MAYS;

EID: 84883258765     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2132-7     Document Type: Article

References (55)

1. Appenzeller L, Doblin M, Barreiro R, Wang H, Niu X, Kollipara K, Carrigan L, Tomes D, Chapman M, Dhugga KS (2004) Cellulose synthesis in maize: isolation and expression analysis of the cellulose synthase (CesA) gene family. Cellulose 11: 287-299.
2. Bai Q (2005) Inheritance of stover quality traits and their determination by near-infrared reflectance spectroscopy (NIRS) in silage maize. Dissertation, China Agricultural University.
3. Bohn M, Groh S, Khariallah MM, Hoisington DA, Utz HF, Melchinger AE (2001) Re-evaluation of the prospects of marker-assisted selection for improving insect resistance to Diatraea spp. in tropical maize by cross validation and independent validation. Theor Appl Genet 103: 1059-1067.
4. Broman KW, Sen S (2009) A Guide to QTL Mapping with R/qtl. Springer.
5. Charcosset A, Gallais A (1996) Estimation of the contribution of quantitative trait loci (QTL) to the variance of a quantitative trait by means of genetic markers. Theor Appl Genet 93: 1193-1201.
6. Ching A, Rafalski JA, Luck S, Butruilie MG (2010) Genetic loci associated with mechanical stalk strength in maize. United States Patent Publication. No. US2010/0015623A1.
7. Colbert TR, Darrah LL, Zuber MS (1984) Effect of recurrent selection for stalk crushing strength of agronomic characteristics and soluble stalk solids in maize. Crop Sci 24: 473-478.
8. Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142: 285-294.
9. Flint-Garcia SA, Jampatong C, Darrah LL, Mcmullen MD (2003) Quantitative trait locus analysis of stalk strength in four maize populations. Crop Sci 43: 13-22.
10. Gao M, Guo K, Yang Z, Li X (2003) Study on mechanical properties of corn stalk. Trans CSAM 34: 47-49.
11. Gere JM, Timoshenko SP (1984) Mechanics of Materials. van Nostrand Reinhold Company Ltd, New York.
12. Gou L, Huang J, Zhang B, Li T, Sun Y, Zhao M (2007) Effect of population density on stalk lodging resistant mechanism and agronomic characteristics of maize. Acta Agronomica Sinia 33: 1688-1695.
13. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69: 315-324.
14. Hallauer AR, Carena MJ, Miranda Filho JB (2010) Quantitative Genetics in Maize Breeding. Springer, New York.
15. Hansey CN, Leon N (2011) Biomass yield and cell wall composition of corn with alternative morphologies planted at variable densities. Crop Sci 51: 1005-1015.
16. Hu H, Meng Y, Wang H, Liu H, Chen S (2012) Identifying quantitative trait loci and determining closely related stalk traits for rind penetrometer resistance in a high-oil maize population. Theor Appl Genet 124: 1439-1447.
17. Jannink J, Lorenz AJ, Iwata H (2010) Genomic selection in plant breeding: from theory to practice. Brief Funct Genomics 9: 166-177.
18. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
19. Jia Z, Bai Y (1992) Study on identification of lodging in maize inbred line. China seeds 3: 30-32.
20. Kärkkäinen H, Sillanpää M (2012) Back to basics for Bayesian model building in genomic selection. Genetics 191: 969-987.
21. Kokubo A, Kuraishi S, Sakurai N (1989) Culm strength of barley correlation among maximum bending stress, cell wall dimensions, and cellulose content. Plant Physiol 91: 876-882.
22. Kokubo A, Sakurai N, Kuraishi S, Takeda K (1991) Culm brittleness of barley (Hordeum vulgare L.) mutants is caused by smaller number of cellulose molecules in cell wall. Plant Physiol 97: 509-514.
23. Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124: 743-756.
24. Lauer J (1995) High-Oil Corn: advantages and risks. Field Crops 28. 31-3.
25. Li Y, Qian Q, Zhou Y, Yan M, Sun L, Zhang M, Fu Z, Wang Y, Han B, Pang X, Chen M, Li J (2003) BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell 15: 2020-2031.
26. Lorenz AJ, Chao S, Asoro FG, Heffner EL, Hayashi T, Iwata H, Smith HI, Sorrells ME, Jannink JL (2011) Genomic selection in plant breeding: knowledge and prospects. Adv Agron 110: 77-123.
27. Ma Q (2009) The expression of caffeic acid 3-O-methyltransferase in two wheat genotypes differing in lodging resistance. J Exp Botany 60: 2763-2771.
28. Melchinger AE, Utz HF, Piepho HP, Zeng Z, Schön CC (2007) The role of epistasis in the manifestation of heterosis: a system-oriented approach. Genetics 177: 1815-1825.
29. Meuwissen TH, Hayes BJ, Goddard M (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819-1829.
30. Mode CJ, Robinson HF (1959) Pleiotropism and the genetic variance and covariance. Biometrics 15: 518-537.
31. Ordas B, Malvar R, Santiago R, Butron A (2010) QTL mapping for Mediterranean corn borer resistance in European flint germplasm using recombinant inbred lines. BMC Genomics 11: 174-183.
32. Papst C, Bohn M, Utz HF, Melchinger AE, Klein D, Eder J (2004) QTL mapping for European corn borer resistance (Ostrinia nubilalis Hb.), agronomic and forage quality traits of testcross progenies in early-maturing European maize (Zea mays L.) germplasm. Theor Appl Genet 108: 1545-1554.
33. Piepho H-P, Mohring J, Schulz-Streek T, Ogutu JO (2012) A stage-wise approach of the analysis of multi-environment trials. Biometrical J 00: 1-17.
34. SAS Institute Inc (2008) SAS user's guide, version9. 2. SAS institute Cary, NC.
35. Schwarz G (1978) Estimating the dimension of a model. Ann Stat 6: 461-464.
36. Shenk JS, Westerhaus MO (1991) Population structuring of near infrared spectra and modified partial least square regression. Crop Sci 31: 1548-1555.
37. Sibale EM, Darrah LL, Zuber MS (1992) Comparison of two rind penetrometers for measurement of stalk strength in maize. Maydica 37: 111-114.
38. Stojsin R, Ivanovic M, Kojic L, Stojsin D (1991) Inheritance of grain yield and several stalk characteristics significant in resistance to stalk lodging maize (Zea mays L.). Maydica 36: 75-81.
39. Sun X (1987) Studies on the resistance of the culms of rice to lodging. Scientia Agricultura Scinica 20: 32-37.
40. R Core Team (2012) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, http://www. R-project. org/.
41. Technow F, Melchinger AE (2013) Genomic prediction of dichotomous traits with Bayesian logistic models. Theor Appl Genet 126: 1133-1143.
42. Technow F, Bürger A, Melchinger AE (2013) Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups. G3 3: 197-203.
43. Thompson DL (1963) Stalk strength of corn as measured by crushing strength and rind thickness. Crop Sci 3: 323-329.
44. Utz HF (2010) PLABSTAT: a computer program for statistical analysis of plant breeding experiments. Institute of Plant Breeding, Seed Science, and Population Genetics, University of Hohenheim, Stuttgart, Germany.
45. Utz HF, Melchinger AE, Schön CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154: 1839-1849.
46. Wang H (2009) QTL analysis and genetic relationship between kernel compositions and stalk nutrition quality traits in high oil maize population. Dissertation, China Agricultural University.
47. Wang J, Li H, Zhang L, Li C, Meng L (2010) Users' Manual of QTL IciMapping V3. 0, Beijing.
48. Würschum T, Liu W, Gowda M, Maurer HP, Fischer S, Schechert, Reif JC (2012) Comparison of biometrical models for joint linkage association mapping. Heredity 108: 332-340.
49. Xu S (2008) Quantitative trait locus mapping can benefit from segregation distortion. Genetics 180: 2201-2208.
50. Yuan Z, Feng B, Zhao A, Liang A (2002) Dynamic analysis and comprehensive evaluation of crop-stem lodging resistance. Trans CSAE 18(6): 30-31.
51. Zeng Z (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
52. 2 populations. Theor Appl Genet 121: 1071-1082.
53. Zuber MS, Grogan CO (1961) A new technique for measuring stalk strength in corn. Crop Sci 1: 378-380.
54. Zuber MS, Colbert TR, Bauman LF (1977) Effect of brown-midrib-3 mutant in maize (Zea mays) on stalk strength. Z Pflanzenzuecht 79: 310-314.
55. Zuber MS, Colbert TR, Darrah LL (1980) Effect of recurrent selection for crushing strength on several stalk components in maize. Crop Sci 20: 711-717.