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Volumn 25, Issue 7, 2013, Pages 2536-2544

Formation and expression of pseudogenes on the B chromosome of rye

Author keywords

[No Author keywords available]

Indexed keywords

SECALE CEREALE;

EID: 84883168815     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.113.111856     Document Type: Article
Times cited : (71)

References (44)
  • 1
    • 76549103412 scopus 로고    scopus 로고
    • Reflections on studies of gene expression in aneuploids
    • Birchler, J.A. (2010). Reflections on studies of gene expression in aneuploids. Biochem. J. 426: 119-123.
    • (2010) Biochem. J. , vol.426 , pp. 119-123
    • Birchler, J.A.1
  • 2
    • 15244350824 scopus 로고    scopus 로고
    • Dosage balance in gene regulation: Biological implications
    • Birchler, J.A., Riddle, N.C., Auger, D.L., and Veitia, R.A. (2005). Dosage balance in gene regulation: Biological implications. Trends Genet. 21: 219-226.
    • (2005) Trends Genet. , vol.21 , pp. 219-226
    • Birchler, J.A.1    Riddle, N.C.2    Auger, D.L.3    Veitia, R.A.4
  • 3
    • 0030777769 scopus 로고    scopus 로고
    • B chromosomes: A physiological enigma
    • Bougourd, S.M., and Jones, R.N. (1997). B chromosomes: A physiological enigma. New Phytol. 137: 43-54.
    • (1997) New Phytol. , vol.137 , pp. 43-54
    • Bougourd, S.M.1    Jones, R.N.2
  • 6
    • 69249217780 scopus 로고    scopus 로고
    • Rye B chromosomes are weakly transcribed and might alter the transcriptional activity of A chromosome sequences
    • Carchilan, M., Kumke, K., Mikolajewski, S., and Houben, A. (2009). Rye B chromosomes are weakly transcribed and might alter the transcriptional activity of A chromosome sequences. Chromosoma 118: 607-616.
    • (2009) Chromosoma , vol.118 , pp. 607-616
    • Carchilan, M.1    Kumke, K.2    Mikolajewski, S.3    Houben, A.4
  • 7
    • 84919868313 scopus 로고    scopus 로고
    • The B chromosome of maize
    • In J.L. Bennetzen and S. Hake, eds (New York: Springer)
    • Carlson, W. (2009). The B chromosome of maize. In Handbook of Maize J.L. Bennetzen and S. Hake, eds (New York: Springer), pp. 459-480.
    • (2009) Handbook of Maize , pp. 459-480
    • Carlson, W.1
  • 8
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P., and Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156-159.
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 9
    • 70149110707 scopus 로고    scopus 로고
    • The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion
    • Coleman, J.J., et al. (2009). The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion. PLoS Genet. 5: e1000618.
    • (2009) PLoS Genet. , vol.5
    • Coleman, J.J.1
  • 10
    • 42049115115 scopus 로고    scopus 로고
    • Dissection of rye B chromosomes, and nondisjunction properties of the dissected segments in a common wheat background
    • Endo, T.R., Nasuda, S., Jones, N., Dou, Q., Akahori, A., Wakimoto, M., Tanaka, H., Niwa, K., and Tsujimoto, H. (2008). Dissection of rye B chromosomes, and nondisjunction properties of the dissected segments in a common wheat background. Genes Genet. Syst. 83: 23-30.
    • (2008) Genes Genet. Syst. , vol.83 , pp. 23-30
    • Endo, T.R.1    Nasuda, S.2    Jones, N.3    Dou, Q.4    Akahori, A.5    Wakimoto, M.6    Tanaka, H.7    Niwa, K.8    Tsujimoto, H.9
  • 11
    • 0036023140 scopus 로고    scopus 로고
    • Macrobotanical evidence for plant use at Neolithic Çatalhöyük, southcentral Anatolia, Turkey
    • Fairbairn, A., Asouti, E., Near, J., and Martinoli, D. (2002). Macrobotanical evidence for plant use at Neolithic Çatalhöyük, southcentral Anatolia, Turkey. Veg. Hist. Archaeobot. 11: 41-54.
    • (2002) Veg. Hist. Archaeobot. , vol.11 , pp. 41-54
    • Fairbairn, A.1    Asouti, E.2    Near, J.3    Martinoli, D.4
  • 12
    • 0035064227 scopus 로고    scopus 로고
    • Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.)
    • Francki, M.G. (2001). Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.). Genome 44: 266-274.
    • (2001) Genome , vol.44 , pp. 266-274
    • Francki, M.G.1
  • 13
    • 0025636102 scopus 로고
    • Muller's ratchet and the evolution of supernumerary chromosomes
    • Green, D.M. (1990). Muller's ratchet and the evolution of supernumerary chromosomes. Genome 33: 818-824.
    • (1990) Genome , vol.33 , pp. 818-824
    • Green, D.M.1
  • 15
    • 0001112224 scopus 로고
    • On the origins of domesticated rye-Secale cereale: The finds from Aceramic Can Hasan III in Turkey
    • Hillmann, G.C. (1978). On the origins of domesticated rye-Secale cereale: The finds from Aceramic Can Hasan III in Turkey. Anatolian Stud. 28: 157-174.
    • (1978) Anatolian Stud. , vol.28 , pp. 157-174
    • Hillmann, G.C.1
  • 16
    • 0034952307 scopus 로고    scopus 로고
    • New evidence of Lateglacial cereal cultivation at Abu Hureyra on the Euphrates
    • Hillman, G., Hedges, R., Moore, A., Colledge, S., and Pettitt, P. (2001). New evidence of Lateglacial cereal cultivation at Abu Hureyra on the Euphrates. Holocene 11: 383-393.
    • (2001) Holocene , vol.11 , pp. 383-393
    • Hillman, G.1    Hedges, R.2    Moore, A.3    Colledge, S.4    Pettitt, P.5
  • 17
    • 84966147752 scopus 로고
    • B-chromosome selection in Allium schoenoprasum. 2. Experimental populations
    • Holmes, D.S., and Bougourd, S.M. (1991). B-chromosome selection in Allium schoenoprasum. 2. Experimental populations. Heredity 67: 117-122.
    • (1991) Heredity , vol.67 , pp. 117-122
    • Holmes, D.S.1    Bougourd, S.M.2
  • 18
    • 84930726765 scopus 로고    scopus 로고
    • Biology and evolution of B chromosomes
    • In J. Greilhuber, J. Dolezel, and J.F. Wendel, eds (Vienna: Springer Press)
    • Houben, A., Banaei-Moghaddam, A., and Klemme, S. (2013). Biology and evolution of B chromosomes. In Plant Genome Diversity, Vol. 2., J. Greilhuber, J. Dolezel, and J.F. Wendel, eds (Vienna: Springer Press) pp. 149-166.
    • (2013) Plant Genome Diversity , vol.2 , pp. 149-166
    • Houben, A.1    Banaei-Moghaddam, A.2    Klemme, S.3
  • 20
    • 0028130890 scopus 로고
    • B-chromosomes in inbred lines of rye (Secale cereale L). 1. Vigor and fertility
    • Jimenez, M.M., Romera, F., Puertas, M.J., and Jones, R.N. (1994). B-chromosomes in inbred lines of rye (Secale cereale L). 1. Vigor and fertility. Genetica 92: 149-154.
    • (1994) Genetica , vol.92 , pp. 149-154
    • Jimenez, M.M.1    Romera, F.2    Puertas, M.J.3    Jones, R.N.4
  • 21
    • 0029199676 scopus 로고
    • Tansley Review No 85, B chromosomes in plants
    • Jones, R.N. (1995). Tansley Review No 85, B chromosomes in plants. New Phytol. 131: 411-434.
    • (1995) New Phytol. , vol.131 , pp. 411-434
    • Jones, R.N.1
  • 22
    • 0004068614 scopus 로고
    • 1st ed. (London, New York: Academic Press)
    • Jones, R.N., and Rees, H. (1982). B Chromosomes, 1st ed. (London, New York: Academic Press).
    • (1982) B Chromosomes
    • Jones, R.N.1    Rees, H.2
  • 24
    • 26444586244 scopus 로고    scopus 로고
    • Molecular evidence for transcription of genes on a B chromosome in Crepis capillaris
    • Leach, C.R., Houben, A., Field, B., Pistrick, K., Demidov, D., and Timmis, J.N. (2005). Molecular evidence for transcription of genes on a B chromosome in Crepis capillaris. Genetics 171: 269-278.
    • (2005) Genetics , vol.171 , pp. 269-278
    • Leach, C.R.1    Houben, A.2    Field, B.3    Pistrick, K.4    Demidov, D.5    Timmis, J.N.6
  • 25
    • 37849044967 scopus 로고    scopus 로고
    • Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences
    • Lemos, B., Araripe, L.O., and Hartl, D.L. (2008). Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences. Science 319: 91-93.
    • (2008) Science , vol.319 , pp. 91-93
    • Lemos, B.1    Araripe, L.O.2    Hartl, D.L.3
  • 26
    • 84979192909 scopus 로고
    • Transfer to wheat of accessory chromosomes from rye
    • Lindström, J. (1965). Transfer to wheat of accessory chromosomes from rye. Hereditas 54: 149-155.
    • (1965) Hereditas , vol.54 , pp. 149-155
    • Lindström, J.1
  • 27
    • 51549086723 scopus 로고    scopus 로고
    • Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres
    • Liu, Z., Yue, W., Li, D., Wang, R.R., Kong, X., Lu, K., Wang, G., Dong, Y., Jin, W., and Zhang, X. (2008). Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres. Chromosoma 117: 445-456.
    • (2008) Chromosoma , vol.117 , pp. 445-456
    • Liu, Z.1    Yue, W.2    Li, D.3    Wang, R.R.4    Kong, X.5    Lu, K.6    Wang, G.7    Dong, Y.8    Jin, W.9    Zhang, X.10
  • 28
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and Conery, J.S. (2000). The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 30
    • 84880860307 scopus 로고    scopus 로고
    • B chromosomes of rye are highly conserved and accompanied the development of early agriculture
    • (June 5)
    • Marques, A., Banaei-Moghaddam, A.M., Klemme, S., Blattner, F. R., Niwa, K., Guerra, M., and Houben, A. (June 5, 2013). B chromosomes of rye are highly conserved and accompanied the development of early agriculture. Ann. Bot. 112: 527-534.
    • (2013) Ann. Bot. , vol.112 , pp. 527-534
    • Marques, A.1    Banaei-Moghaddam, A.M.2    Klemme, S.3    Blattner, F.R.4    Niwa, K.5    Guerra, M.6    Houben, A.7
  • 31
    • 84865161947 scopus 로고    scopus 로고
    • Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences
    • Martis, M.M., et al. (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc. Natl. Acad. Sci. USA 109: 13343-13346.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 13343-13346
    • Martis, M.M.1
  • 32
    • 0033615073 scopus 로고    scopus 로고
    • Chromosomal location effects on gene sequence evolution in mammals
    • Matassi, G., Sharp, P.M., and Gautier, C. (1999). Chromosomal location effects on gene sequence evolution in mammals. Curr. Biol. 9: 786-791.
    • (1999) Curr. Biol. , vol.9 , pp. 786-791
    • Matassi, G.1    Sharp, P.M.2    Gautier, C.3
  • 33
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: Cellular organization of genome function
    • Misteli, T. (2007). Beyond the sequence: Cellular organization of genome function. Cell 128: 787-800.
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 34
    • 0029167951 scopus 로고
    • Origin of B chromosomes in cultivated rye
    • Niwa, K., and Sakamoto, S. (1995). Origin of B chromosomes in cultivated rye. Genome 38: 307-312.
    • (1995) Genome , vol.38 , pp. 307-312
    • Niwa, K.1    Sakamoto, S.2
  • 35
    • 0029797532 scopus 로고    scopus 로고
    • Detection of B chromosomes in rye collected from Pakistan and China
    • Niwa, K., and Sakamoto, S. (1996). Detection of B chromosomes in rye collected from Pakistan and China. Hereditas 124: 211-215.
    • (1996) Hereditas , vol.124 , pp. 211-215
    • Niwa, K.1    Sakamoto, S.2
  • 36
    • 84866543760 scopus 로고    scopus 로고
    • Pseudogenes: Newly discovered players in human cancer
    • Poliseno, L. (2012). Pseudogenes: Newly discovered players in human cancer. Sci. Signal. 5: re5.
    • (2012) Sci. Signal. , vol.5
    • Poliseno, L.1
  • 37
    • 77958167961 scopus 로고    scopus 로고
    • Dosage compensation and the global re-balancing of aneuploid genomes
    • Prestel, M., Feller, C., and Becker, P.B. (2010). Dosage compensation and the global re-balancing of aneuploid genomes. Genome Biol. 11: 216.
    • (2010) Genome Biol. , vol.11 , pp. 216
    • Prestel, M.1    Feller, C.2    Becker, P.B.3
  • 38
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • Salamov, A.A., and Solovyev, V.V. (2000). Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10: 516-522.
    • (2000) Genome Res. , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 39
    • 0024966756 scopus 로고
    • Chromosomal location and evolutionary rate variation in enterobacterial genes
    • Sharp, P.M., Shields, D.C., Wolfe, K.H., and Li, W.H. (1989). Chromosomal location and evolutionary rate variation in enterobacterial genes. Science 246: 808-810.
    • (1989) Science , vol.246 , pp. 808-810
    • Sharp, P.M.1    Shields, D.C.2    Wolfe, K.H.3    Li, W.H.4
  • 40
    • 65549125469 scopus 로고    scopus 로고
    • Transcriptionally active gene fragments derived from potentially fast-evolving donor genes in the rice genome
    • Wang, X.F., Yu, Z.H., Yang, X.Z., Deng, X.W., and Li, L. (2009). Transcriptionally active gene fragments derived from potentially fast-evolving donor genes in the rice genome. Bioinformatics 25: 1215-1218.
    • (2009) Bioinformatics , vol.25 , pp. 1215-1218
    • Wang, X.F.1    Yu, Z.H.2    Yang, X.Z.3    Deng, X.W.4    Li, L.5
  • 41
    • 77956284088 scopus 로고    scopus 로고
    • Patching gaps in plant genomes results in gene movement and erosion of colinearity
    • Wicker, T., Buchmann, J.P., and Keller, B. (2010). Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res. 20: 1229-1237.
    • (2010) Genome Res. , vol.20 , pp. 1229-1237
    • Wicker, T.1    Buchmann, J.P.2    Keller, B.3
  • 42
    • 79959839889 scopus 로고    scopus 로고
    • Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives
    • Wicker, T., et al. (2011). Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23: 1706-1718.
    • (2011) Plant Cell , vol.23 , pp. 1706-1718
    • Wicker, T.1
  • 43
    • 68049129846 scopus 로고    scopus 로고
    • Late Pleistocene and early Holocene climate and the beginnings of cultivation in northern Syria
    • Willcox, G., Buxo, R., and Herveux, L. (2009). Late Pleistocene and early Holocene climate and the beginnings of cultivation in northern Syria. Holocene 19: 151-158.
    • (2009) Holocene , vol.19 , pp. 151-158
    • Willcox, G.1    Buxo, R.2    Herveux, L.3


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