메뉴 건너뛰기




Volumn , Issue , 2011, Pages 35-46

Development and evaluation of a GPU-optimized N-body term for the simulation of biomolecules

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL RESOURCES; CONFORMATIONAL SPACE; LENNARD-JONES FORCES; MASSIVELY PARALLELS; MONTE-CARLO SAMPLING; PARALLEL SAMPLINGS; PROTEIN SIMULATIONS; PROTEIN STRUCTURE PREDICTION;

EID: 84883101501     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (1)

References (12)
  • 1
    • 67650354848 scopus 로고    scopus 로고
    • A free-energy approach for all-Atom protein simulation
    • (May 6)
    • A. Verma and W. Wenzel, "A Free-Energy Approach for All-Atom Protein Simulation, " Biophysical journal 96, no. 9 (May 6, 2009): 3483-3494.
    • (2009) Biophysical Journal , vol.96 , Issue.9 , pp. 3483-3494
    • Verma, A.1    Wenzel, W.2
  • 2
    • 63449135082 scopus 로고    scopus 로고
    • An all-Atom structure-based potential for proteins: Bridging minimal models with all-Atom empirical forcefields
    • P. C. Whitford et al., "An all-Atom structure-based potential for proteins: Bridging minimal models with all-Atom empirical forcefields, " Proteins: Structure, Function, and Bioinformatics 75, no. 2 (2009): 430-441.
    • (2009) Proteins: Structure, Function, and Bioinformatics , vol.75 , Issue.2 , pp. 430-441
    • Whitford, P.C.1
  • 3
    • 33846349887 scopus 로고
    • A hierarchical O (N log N) force-calculation algorithm
    • (December 4)
    • J. Barnes and P. Hut, "A hierarchical O (N log N) force-calculation algorithm, " Nature 324, no. 6096 (December 4, 1986): 446-449.
    • (1986) Nature , vol.324 , Issue.6096 , pp. 446-449
    • Barnes, J.1    Hut, P.2
  • 5
    • 0034700249 scopus 로고    scopus 로고
    • Biochemical and Structural Analysis of the Interaction between the UBA(2) domain of the DNA repair protein HHR23A and HIV-1 Vpr
    • (November 1)
    • E. S. Withers-Ward et al., "Biochemical and Structural Analysis of the Interaction between the UBA(2) Domain of the DNA Repair Protein HHR23A and HIV-1 Vpr†, " Biochemistry 39, no. 46 (November 1, 2000): 14103-14112.
    • (2000) Biochemistry , vol.39 , Issue.46 , pp. 14103-14112
    • Withers-Ward, E.S.1
  • 6
    • 77952654146 scopus 로고    scopus 로고
    • Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase
    • (May 25)
    • R. S. Hall et al., "Discovery and Structure Determination of the Orphan Enzyme Isoxanthopterin Deaminase, " Biochemistry 49, no. 20 (May 25, 2010): 4374-4382.
    • (2010) Biochemistry , vol.49 , Issue.20 , pp. 4374-4382
    • Hall, R.S.1
  • 7
    • 51149098989 scopus 로고    scopus 로고
    • The crystal structure of a mammalian fatty acid synthase
    • T. Maier, M. Leibundgut, and N. Ban, "The Crystal Structure of a Mammalian Fatty Acid Synthase, " Science 321, no. 5894 (2008): 1315-1322.
    • (2008) Science , vol.321 , Issue.5894 , pp. 1315-1322
    • Maier, T.1    Leibundgut, M.2    Ban, N.3
  • 11
    • 84883129757 scopus 로고    scopus 로고
    • URL
    • NVIDIA CUDA 3.0 OpenCL Programming Guide. URL: http://developer.download. nvidia.com/compute/cuda/3-0/toolkit/docs/NVIDIA-OpenCL-ProgrammingGuide.pdf.
    • NVIDIACUDA 3.0 Open CL Programming Guide
  • 12
    • 74049152899 scopus 로고    scopus 로고
    • 42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence
    • (Portland, Oregon: ACM)
    • T. Hamada et al., "42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence, " in Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis (Portland, Oregon: ACM, 2009), 1-12.
    • (2009) Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis , pp. 1-12
    • Hamada, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.