Internet-based solutions for analysis of next-generation sequence data

Journal of Clinical Microbiology

Volumn 51, Issue 9, 2013, Pages 3162-

  Larsen, Mette Voldby ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC RESISTANCE; GENE IDENTIFICATION; GENE SEQUENCE; HIGH THROUGHPUT SEQUENCING; LETTER; MULTILOCUS SEQUENCE TYPING; NEXT GENERATION SEQUENCING; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES IDENTIFICATION;

BETA-LACTAM RESISTANCE; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MALE;

EID: 84882736883     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01348-13     Document Type: Letter

References (4)

1. Sherry NL, Porter JL, Seemann T, Watkins A, Stinear TP, Howden BP. 2013. Outbreak investigation using high-throughput genome sequencing within a diagnostic microbiology laboratory. J. Clin. Microbiol. 51:1396-1401.
2. Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Ponten T, Ussery DW, Aarestrup FM, Lund O. 2012. Multilocus sequence typing of total-genome-sequenced bacteria. J. Clin. Microbiol. 50:1355-1361.
3. Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. 2012. Identification of acquired antimicrobial resistance genes. J. Antimicrob. Chemother. 67:2640-2644.
4. Leekitcharoenphon P, Mortensen RK, Thomsen MCF, Friis C, Rasmussen S, Aarestrup FM. 2012. snpTree-a web-server to identify and construct SNP trees from whole genome sequence data. BMC Genomics 13(Suppl 7):S6. doi:10.1186/1471-2164-13-S7-S6.