Molecular dynamics simulations on Cray clusters using the SCIDDLE-PVM environment

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 1156, Issue , 1996, Pages 142-149

  Arbenz, Peter ^a   Billeter, Martin ^a   Güntert, Peter ^a   Luginbühl, Peter ^a   Taufer, Michela ^a,b   Von Matt, Urs ^a  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84882570586     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3540617795_18     Document Type: Conference Paper

References (10)

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2. P. Arbenz, H. P. Lüthi, J. E. Mertz, and W. Scott: Applied Distributed Supercomputing in Homogeneous Networks. International Journal of High Speed Computing, 4 (1992), pp. 87-108.
3. P. Arbenz, H. P. Lüthi, Ch. Sprenger, and S. Vogel: Sciddle: A Tool for Large Scale Distributed Computing. Concurrency: Practice and Experience, 7 (1995), pp. 121- 146.
4. M. Billeter, P. Giintert, P. Luginbühl, and K. Wüthrich: Hydration and DNA recognition by homeodomalns, Cell, 85 (1996), pp. 1057-1065.
5. H. Casanova, J. Dongarra, and W. Jiang: The Performance of PVM on Massively Parallel Processing Systems. Tech. Report CS-95-301, University of Tennessee, Computer Science Department, Knoxville, TN, August 1995, http ://www. cs. utk. edu/~library/TechReports/1995/ut-cs-95-301. ps.Z.
6. P. Luginbühl, P. Güntert, M. Billeter, and K. Wüthrich: The new program OPAL for molecular dynamics simulations and energy refinements of biological macromolecules, J. Biomol. NMR, (1996), in press.
7. The MathWorks Inc., MATLAB, High-Performance Numeric Computation and Visualization Software, Natick, Massachusetts, 1992.
8. H. Poxon and L. Costello: Network PVM Performance. Cray Research Inc., Software Division, Eagan, MN, unpublished manuscript, June 1995.
9. Ch. Sprenger: User's Guide to Sciddle Version 3.0, Tech. Report 208, ETH Ziirich, Computer Science Department, December 1993, ftp://ftp inf.ethz.ch/pub/publications/tech-report s/2xx/208 ps. I0. W.F. van Gunsteren and A.E. Mark: On the interpretation of biochemical data by molecular dynamics computer simulation. Eur. J. Biochem., 204 (1992), pp. 947- 961.
10. W.F. van Gunsteren and A.E. Mark: On the interpretation of biochemical data by molecular dynamics computer simulation. Eur. J. Biochem., 204 (1992), pp. 947- 961.