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Volumn , Issue , 2009, Pages 7-20

Tagging transcription starting sites with CAGE

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EID: 84881790138     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.4032/9789814241359     Document Type: Chapter
Times cited : (1)

References (26)
  • 1
    • 33744805985 scopus 로고    scopus 로고
    • Genome-wide analysis of mammalian promoter architecture and evolution.
    • P. Carninci et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. (2006).
    • (2006) Nat. Genet.
    • Carninci, P.1
  • 2
    • 34250160256 scopus 로고    scopus 로고
    • RNA maps reveal new RNA classes and a possible function for pervasive transcription.
    • P. Kapranov, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316, 1484-1488 (2007).
    • (2007) Science 316 , pp. 1484-1488
    • Kapranov, P.1
  • 3
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.
    • J. Cheng et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308, 1149-1154 (2005).
    • (2005) Science , vol.308 , pp. 1149-1154
    • Cheng, J.1
  • 4
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci, P. et al. The transcriptional landscape of the mammalian genome. Science 309, 1559-1563 (2005).
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1
  • 5
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • S. Katayama et al. Antisense transcription in the mammalian transcriptome. Science 309, 1564-1566 (2005).
    • (2005) Science , vol.309 , pp. 1564-1566
    • Katayama, S.1
  • 7
    • 34249098071 scopus 로고    scopus 로고
    • Mammalian RNA polymerase II core promoters: insights fromgenome-wide studies
    • A. Sandelin et al. Mammalian RNA polymerase II core promoters: insights fromgenome-wide studies. Nat. Rev. Genet. 8, 424-436 (2007).
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 424-436
    • Sandelin, A.1
  • 8
    • 0035021811 scopus 로고    scopus 로고
    • Identification and characterization of the potential promoter regions of 1031 kinds of human genes
    • Y. Suzuki et al. Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res. 11, 677-684 (2001).
    • (2001) Genome Res. , vol.11 , pp. 677-684
    • Suzuki, Y.1
  • 10
    • 0036246030 scopus 로고    scopus 로고
    • Using the transcriptome to annotate the genome
    • S. Saha et al. Using the transcriptome to annotate the genome. Nat. Biotechnol. 20, 508-512 (2002).
    • (2002) Nat. Biotechnol. , vol.20 , pp. 508-512
    • Saha, S.1
  • 11
    • 34249721400 scopus 로고    scopus 로고
    • Constructing the landscape of the mammalian transcriptome
    • P. Carninci, Constructing the landscape of the mammalian transcriptome. J. Exp. Biol. 210, 1497-1506 (2007).
    • (2007) J. Exp. Biol. , vol.210 , pp. 1497-1506
    • Carninci, P.1
  • 12
    • 9144233601 scopus 로고    scopus 로고
    • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
    • T. Shiraki et al. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc. Natl. Acad. Sci. USA. 100, 1577-1581 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA. , vol.100 , pp. 1577-1581
    • Shiraki, T.1
  • 13
    • 84988044467 scopus 로고    scopus 로고
    • CAGE: Cap analysis of gene expression
    • R. Kodzius et al. CAGE: Cap analysis of gene expression. Nat. Methods. 3, 211-222 (2006).
    • (2006) Nat. Methods , vol.3 , pp. 211-222
    • Kodzius, R.1
  • 14
    • 0031905770 scopus 로고    scopus 로고
    • Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.
    • P. Carninci et al. Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA. Proc. Natl. Acad. Sci. USA 95, 520-524 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 520-524
    • Carninci, P.1
  • 16
    • 4444308856 scopus 로고    scopus 로고
    • 5'-end SAGE for the analysis of transcriptional start sites
    • S. Hashimoto et al. 5'-end SAGE for the analysis of transcriptional start sites. Nat. Biotechnol. 22, 1146-1149 (2004).
    • (2004) Nat. Biotechnol , vol.22 , pp. 1146-1149
    • Hashimoto, S.1
  • 17
    • 23644460630 scopus 로고    scopus 로고
    • Tag-based approaches for transcriptome research and genome annotation
    • M. Harbers and P. Carninci. Tag-based approaches for transcriptome research and genome annotation. Nat. Methods 2, 495-502 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 495-502
    • Harbers, M.1    Carninci, P.2
  • 18
    • 20844463584 scopus 로고    scopus 로고
    • Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
    • P. Ng et al. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat. Methods 2, 105-111 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 105-111
    • Ng, P.1
  • 19
    • 35748956435 scopus 로고    scopus 로고
    • An evaluation of 3C-based methods to capture DNA interactions
    • M. Simonis, J. Kooren and W. de Laat. An evaluation of 3C-based methods to capture DNA interactions. Nat. Methods 4, 895-901 (2007).
    • (2007) Nat. Methods , vol.4 , pp. 895-901
    • Simonis, M.1    Kooren, J.2    De Laat, W.3
  • 20
    • 0038349624 scopus 로고    scopus 로고
    • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    • M. Zavolan et al. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res. 13, 1290-1300 (2003).
    • (2003) Genome Res , vol.13 , pp. 1290-1300
    • Zavolan, M.1
  • 21
    • 49749112881 scopus 로고    scopus 로고
    • Long, processive enzymatic DNA synthesis using 100% dye-labeled terminal phosphate-linked nucleotides
    • J. Korlach et al. Long, processive enzymatic DNA synthesis using 100% dye-labeled terminal phosphate-linked nucleotides. Nucleotides Nucleic Acids 27, 1072-83 (2008).
    • (2008) Nucleotides Nucleic Acids , vol.27 , pp. 1072-1083
    • Korlach, J.1
  • 22
    • 46249103973 scopus 로고    scopus 로고
    • Stem cell transcriptome profiling via massivescale mRNA sequencing
    • N. Cloonan et al. Stem cell transcriptome profiling via massivescale mRNA sequencing. Nat. Methods 5, 613-9 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 613-619
    • Cloonan, N.1
  • 24
    • 33646473694 scopus 로고    scopus 로고
    • Complex Loci in human and mouse genomes
    • P. G. Engstrom et al. Complex Loci in human and mouse genomes. PLoS Genet. 2, e47 (2006).
    • (2006) PLoS Genet , vol.2
    • Engstrom, P.G.1
  • 25
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • E. Birney et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816 (2007).
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1
  • 26
    • 34249063835 scopus 로고    scopus 로고
    • Dynamic usage of transcription start sites within core promoters
    • H. Kawaji et al. Dynamic usage of transcription start sites within core promoters. Genome Biol. 7, R118 (2006).
    • (2006) Genome Biol. , vol.7
    • Kawaji, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.