메뉴 건너뛰기




Volumn 500, Issue 7462, 2013, Pages 335-339

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

(28)  Singh, Rajinder a   Ong Abdullah, Meilina a   Low, Eng Ti Leslie a   Manaf, Mohamad Arif Abdul a   Rosli, Rozana a   Nookiah, Rajanaidu a   Ooi, Leslie Cheng Li a   Ooi, Siew Eng a   Chan, Kuang Lim a   Halim, Mohd Amin a   Azizi, Norazah a   Nagappan, Jayanthi a   Bacher, Blaire b   Lakey, Nathan b   Smith, Steven W b   He, Dong b   Hogan, Michael b   Budiman, Muhammad A b   Lee, Ernest K c   Desalle, Rob c   more..


Author keywords

[No Author keywords available]

Indexed keywords

ABSCISIC ACID; ACID; BIOFUEL; EDIBLE OIL; RNA 5S;

EID: 84881662482     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature12309     Document Type: Article
Times cited : (448)

References (43)
  • 1
    • 79961073194 scopus 로고    scopus 로고
    • Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning
    • Bourgis, F. et al. Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning. Proc. Natl Acad. Sci. USA 108, 12527-12532 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 12527-12532
    • Bourgis, F.1
  • 2
    • 0010557069 scopus 로고
    • Interspecific hybrids in the genus Elaeis I. crossability, cytogenetics and fertility of F1 hybrids of E. guineensis 3 E. oleifera
    • Hardon, J. J. & Tan, G. Y. Interspecific hybrids in the genus Elaeis I. crossability, cytogenetics and fertility of F1 hybrids of E. guineensis 3 E. oleifera. Euphytica 18, 372-380 (1969).
    • (1969) Euphytica , vol.18 , pp. 372-380
    • Hardon, J.J.1    Tan, G.Y.2
  • 3
    • 81855190649 scopus 로고    scopus 로고
    • Epigenetic imbalance and the floral developmental abnormality of the in vitro-regenerated oil palm Elaeis guineensis
    • Jaligot, E. et al. Epigenetic imbalance and the floral developmental abnormality of the in vitro-regenerated oil palm Elaeis guineensis. Ann. Bot. 108, 1453-1462 (2011).
    • (2011) Ann. Bot. , vol.108 , pp. 1453-1462
    • Jaligot, E.1
  • 10
    • 0031414836 scopus 로고    scopus 로고
    • Construction of a RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq.)
    • Mayes, S., Jack, P. L., Corley, R. H. & Marshall, D. F. Construction of a RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq.). Genome 40, 116-122 (1997).
    • (1997) Genome , vol.40 , pp. 116-122
    • Mayes, S.1    Jack, P.L.2    Corley, R.H.3    Marshall, D.F.4
  • 11
    • 18144431383 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags from oil palm (Elaeis guineensis)
    • Jouannic, S. et al. Analysis of expressed sequence tags from oil palm (Elaeis guineensis). FEBS Lett. 579, 2709-2714 (2005).
    • (2005) FEBS Lett. , vol.579 , pp. 2709-2714
    • Jouannic, S.1
  • 12
    • 38849127397 scopus 로고    scopus 로고
    • Analysis and functional annotation of expressed sequence tags (ESTs) frommultiple tissues of oil palm (Elaeis guineensis Jacq.)
    • Ho, C. -L. et al. Analysis and functional annotation of expressed sequence tags (ESTs) frommultiple tissues of oil palm (Elaeis guineensis Jacq.).BMCGenomics 8, 381 (2007).
    • (2007) BMC Genomics , vol.8 , pp. 381
    • Ho, C.-L.1
  • 13
    • 46149124081 scopus 로고    scopus 로고
    • Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: Identifying genes associated with callogenesis andembryogenesis
    • Low, E. T. L. et al. Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis andembryogenesis.BMCPlant Biol. 8,62(2008).
    • (2008) BMC Plant Biol. , vol.8 , pp. 62
    • Low, E.T.L.1
  • 14
    • 79958032406 scopus 로고    scopus 로고
    • Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism
    • Tranbarger, T. J. et al. Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism. Plant Physiol. 156, 564-584 (2011).
    • (2011) Plant Physiol. , vol.156 , pp. 564-584
    • Tranbarger, T.J.1
  • 15
    • 0346362490 scopus 로고    scopus 로고
    • Maize genome sequencing by methylation filtration
    • Palmer, L. E. et al. Maize genome sequencing by methylation filtration. Science 302, 2115-2117 (2003).
    • (2003) Science , vol.302 , pp. 2115-2117
    • Palmer, L.E.1
  • 16
    • 79958165589 scopus 로고    scopus 로고
    • De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
    • Al-Dous, E. K. et al. De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nature Biotechnol. 29, 521-527 (2011).
    • (2011) Nature Biotechnol , vol.29 , pp. 521-527
    • Al-Dous, E.K.1
  • 17
    • 0033834812 scopus 로고    scopus 로고
    • Repetitive DNA and the chromosomesin the genome of oil palm (Elaeis guineensis)
    • Castilho, A. M., Vershinin, A. V. & Heslop-Harrison, J. S. Repetitive DNA and the chromosomesin the genome of oil palm (Elaeis guineensis). Ann. Bot. 85, 837-844 (2000).
    • (2000) Ann. Bot. , vol.85 , pp. 837-844
    • Castilho, A.M.1    Vershinin, A.V.2    Heslop-Harrison, J.S.3
  • 18
    • 0026698209 scopus 로고
    • Characterization of Arabidopsis thaliana telomeres isolated in yeast
    • Richards, E. J., Chao, S., Vongs, A. & Yang, J. Characterization of Arabidopsis thaliana telomeres isolated in yeast. Nucleic Acids Res. 20, 4039-4046 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4039-4046
    • Richards, E.J.1    Chao, S.2    Vongs, A.3    Yang, J.4
  • 19
    • 77955689247 scopus 로고    scopus 로고
    • Evolutionary conservation, diversity and specificity of LTRretrotransposons in flowering plants: Insights from genome-wide analysis and multi-specific comparison
    • Du, J. et al. Evolutionary conservation, diversity and specificity of LTRretrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison. Plant J. 63, 584-598 (2010).
    • (2010) Plant J. , vol.63 , pp. 584-598
    • Du, J.1
  • 20
    • 65349091975 scopus 로고    scopus 로고
    • Identification of cDNA RFLP markers and their use for molecular mapping in oil palm
    • Singh, R. et al. Identification of cDNA RFLP markers and their use for molecular mapping in oil palm. Asia Pac. J. Mol. Biol. Biotechnol. 16, 53-63 (2008).
    • (2008) Asia Pac. J. Mol. Biol. Biotechnol. , vol.16 , pp. 53-63
    • Singh, R.1
  • 21
    • 69549117029 scopus 로고    scopus 로고
    • The frequency of polyploid speciation in vascular plants
    • Wood, T. E. et al. The frequency of polyploid speciation in vascular plants. Proc. Natl Acad. Sci. USA 106, 13875-13879 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 13875-13879
    • Wood, T.E.1
  • 22
    • 84864696893 scopus 로고    scopus 로고
    • The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
    • D'Hont, A. et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488, 213-217 (2012).
    • (2012) Nature , vol.488 , pp. 213-217
    • D'Hont, A.1
  • 24
    • 84985366052 scopus 로고
    • Changes in lipid class and fatty acid composition during maturation of mesocarp of oil palm (Elaeis guineensis) variety dura
    • Bafor, M. E. & Osagie, A. U. Changes in lipid class and fatty acid composition during maturation of mesocarp of oil palm (Elaeis guineensis) variety dura. J. Sci. Food Agric. 37, 825-832 (1986).
    • (1986) J. Sci. Food Agric. , vol.37 , pp. 825-832
    • Bafor, M.E.1    Osagie, A.U.2
  • 25
    • 77949906703 scopus 로고    scopus 로고
    • Monitoring development and ripeness of oil palm fruit (Elaeis guneensis) byMRI and bulk NMR
    • Shaarani, S. M., Cárdenas-Blanco, A., Amin, M. H. G., Soon, N. G. & Hall, L. D. Monitoring development and ripeness of oil palm fruit (Elaeis guneensis) byMRI and bulk NMR. Int. J. Agric. Biol. 12, 101-105 (2010).
    • (2010) Int. J. Agric. Biol. , vol.12 , pp. 101-105
    • Shaarani, S.M.1    Cárdenas-Blanco, A.2    Amin, M.H.G.3    Soon, N.G.4    Hall, L.D.5
  • 26
    • 84855272508 scopus 로고    scopus 로고
    • A functional phylogenomic view of the seed plants
    • Lee, E. K. et al. A functional phylogenomic view of the seed plants. PLoS Genet. 7, e1002411 (2011).
    • (2011) PLoS Genet , vol.7
    • Lee, E.K.1
  • 27
    • 84863108685 scopus 로고    scopus 로고
    • The genus Artemisia (Asteraceae: Anthemideae) at a continental crossroads: Molecular insights into migrations, disjunctions, and reticulation samong Old and New World species from a Bering ianper spective
    • Riggins, C. W. & Seigler, D. S. The genus Artemisia (Asteraceae: Anthemideae) at a continental crossroads: molecular insights into migrations, disjunctions, and reticulation samong Old and New World species from a Bering ianper spective. Mol. Phylogenet. Evol. 64, 471-490 (2012).
    • (2012) Mol. Phylogenet. Evol. , vol.64 , pp. 471-490
    • Riggins, C.W.1    Seigler, D.S.2
  • 28
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380 (2005).
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 29
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • Ning, Z., Cox, A. J. & Mullikin, J. C. SSAHA: a fast search method for large DNA databases. Genome Res. 11, 1725-1729 (2001).
    • (2001) Genome Res. , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 30
    • 84881669207 scopus 로고    scopus 로고
    • The oil palmSHELL gene controls oil yield and encodes a homologue of SEEDSTICK
    • this issue
    • Singh, R. et al. The oil palmSHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature http://dx.doi.org/10.1038/nature12356 (this issue).
    • Nature
    • Singh, R.1
  • 31
    • 25444505324 scopus 로고    scopus 로고
    • Construction of linkage maps in full-sib families of diploid out breeding species by minimizing the number of re combinations in hidden inheritance vectors
    • Jansen, J. Construction of linkage maps in full-sib families of diploid outbreeding species by minimizing the number of recombinations in hidden inheritance vectors. Genetics 170, 2013-2025 (2005).
    • (2005) Genetics , vol.170 , pp. 2013-2025
    • Jansen, J.1
  • 32
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • Voorrips, R. E. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93, 77-78 (2002).
    • (2002) J. Hered. , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 33
    • 24044447664 scopus 로고    scopus 로고
    • Auto mate degeneration of heuristics for biological sequence comparison
    • Slater, G. S. & Birney, E. Auto mate degeneration of heuristics for biological sequence comparison. BMC Bioinformatics 6, 31 (2005).
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 34
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • Korf, I. Gene finding in novel genomes. BMC Bioinformatics 5, 59 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 35
    • 8844252293 scopus 로고    scopus 로고
    • TigrScan and Glimmer HMM: Two open source ab initio eukaryotic gene-finders
    • Majoros, W. H., Pertea, M. & Salzberg, S. L. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20, 2878-2879 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 2878-2879
    • Majoros, W.H.1    Pertea, M.2    Salzberg, S.L.3
  • 36
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast programfor clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. & Godzik, A. Cd-hit: a fast programfor clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 37
    • 20044382805 scopus 로고    scopus 로고
    • Sorghumgenomesequencing bymethylation filtration
    • Bedell, J. A. et al. Sorghumgenomesequencing bymethylation filtration. PLoS Biol. 3, e13 (2005).
    • (2005) PLoS Biol. , vol.3
    • Bedell, J.A.1
  • 38
    • 0346494835 scopus 로고    scopus 로고
    • The TIGR Plant Repeat Databases: A collective resource for the identification of repetitive sequences in plants
    • Ouyang,S. & Buell, C. R. The TIGRPlantRepeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res. 32, D360-D363 (2004).
    • (2004) Nucleic Acids Res. , vol.32
    • Ouyang, S.1    Buell, C.R.2
  • 39
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz, S. et al. Versatile and open software for comparing large genomes. Genome Biol. 5, R12 (2004).
    • (2004) Genome Biol. , vol.5
    • Kurtz, S.1
  • 40
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 41
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A. et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1
  • 42
    • 33645106540 scopus 로고    scopus 로고
    • Ortholog ID: Automation of genome-scale ortholog identification within a parsimony framework
    • Chiu, J. C. et al. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22, 699-707 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 699-707
    • Chiu, J.C.1
  • 43
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximumlikelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. RAxML-VI-HPC: maximumlikelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.