A framework for generating realistic synthetic sequences of total internal reflection fluorescence microscopy images

Proceedings - International Symposium on Biomedical Imaging

Volumn , Issue , 2013, Pages 157-160

  Rezatofighi, Seyed Hamid ^a,b   Pitkeathly, William T E ^c   Gould, Stephen ^a   Hartley, Richard ^a,b   Mele, Katarina ^b   Hughes, William E ^d,e   Burchfield, James G ^d  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b CSIRO   (Australia)

^c UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^d GARVAN INSTITUTE OF MEDICAL RESEARCH   (Australia)

^e ST VINCENT S HOSPITAL   (Australia)

Author keywords

Background estimation; Dynamic model; Synthetic data; TIRFM; Vesicle shape deformation

Indexed keywords

BACKGROUND ESTIMATION; DETECTION AND TRACKING; IMAGE FORMATION PROCESS; SHAPE DEFORMATION; SYNTHETIC DATA; TIRFM; TOTAL INTERNAL REFLECTION FLUORESCENCE; TOTAL INTERNAL REFLECTION FLUORESCENCE MICROSCOPY;

FLUORESCENCE MICROSCOPY; MEDICAL IMAGING; REFRACTIVE INDEX;

DYNAMIC MODELS;

EID: 84881645742     PISSN: 19457928     EISSN: 19458452     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2013.6556436     Document Type: Conference Paper

References (12)

1. J.G. Burchfield, J.A. Lopez, K. Mele, P. Vallotton, and W.E. Hughes, "Exocytotic vesicle behaviour assessed by total internal reflection fluorescence microscopy," Traffic, vol. 11, pp. 429-439, 2010.
2. I. Smal, M. Loog, W. Niessen, and E. Meijering, "Quantitative comparison of spot detection methods in fluorescence microscopy," IEEE Trans. Med. Imaging, vol. 29, no. 2, pp. 282-301, 2010.
3. I. Smal, K. Draegestein, N. Galjart,W. Niessen, and E. Meijering, "Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: Application to microtubule growth analysis," IEEE Trans. Med. Imag., vol. 27, no. 6, pp. 789-804, 2008. (Pubitemid 351760851)
4. L. Feng, Y. Xu, Y. Yang, and X. Zheng, "Multiple dense particle tracking in fluorescence microscopy images based on multidimensional assignment," J. Struct. Biol., vol. 173, no. 2, pp. 219-228, 2011.
5. I. Smal, E. Meijering, K. Draegestein, N. Galjart, I. Grigoriev, A. Akhmanova, ME Van Royen, AB Houtsmuller, and W. Niessen, "Multiple object tracking in molecular bioimaging by raoblackwellized marginal particle filtering," Med. Image Anal., vol. 12, no. 6, pp. 764-777, 2008.
6. S.H. Rezatofighi, S. Gould, R. Hartley, K. Mele, and W. Hughes, "Application of the IMM-JPDA filter to multiple target tracking in total internal reflection fluorescence microscopy images," Medical Imag. Comput. Computer-Assist. Interv. (MICCAI), pp. 357-364, 2012.
7. D. Axelrod, "Cell-substrate contacts illuminated by total internal reflection fluorescence.," J. Cell biol., vol. 89, no. 1, pp. 141-145, 1981. (Pubitemid 11066139)
8. A. Upadhyaya, J.R. Chabot, A. Andreeva, A. Samadani, and A. Van Oudenaarden, "Probing polymerization forces by using actinpropelled lipid vesicles," P. Natl. Acad. Sci. USA, vol. 100, no. 8, pp. 4521, 2003.
9. P.A. Giardini, D.A. Fletcher, and J.A. Theriot, "Compression forces generated by actin comet tails on lipid vesicles," P. Natl. Acad. Sci. USA, vol. 100, no. 11, pp. 6493, 2003.
10. V.F. Canales, P.J. Valle, J.E. Oti, and M.P. Cagigal, "Variable resolution with pupil masks," Opt. Commun., vol. 257, no. 2, pp. 247-254, 2006. (Pubitemid 41737814)
11. S.H. Rezatofighi, R. Hartley, and W.E. Hughes, "A new approach for spot detection in total internal reflection fluorescence microscopy," in Proc. IEEE Int. Symp. Biomed. Imag. (ISBI), 2012, pp. 860-863.
12. B. Zhang, J. Fadili, J.-L. Starck, and J.-C. Olivo-Marin, "Multiscale variance-stabilizing transform for mixed-poisson-gaussian processes and its applications in bioimaging," in Proc. IEEE Int. Conf. Image Process. (ICIP), 2007, pp. VI-233-VI-236.