Redefining the role of the quaternary shift in bacillus stearothermophilus phosphofructokinase

Biochemistry

Volumn 52, Issue 32, 2013, Pages 5421-5429

  Mosser, Rockann ^c   Reddy, Manchi C M ^a,b   Bruning, John B ^d   Sacchettini, James C ^a,b   Reinhart, Gregory D ^a,b  

^a TEXAS A AND M UNIVERSITY   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOSTERIC INHIBITION; BACILLUS STEAROTHERMOPHILUS; BINDING AFFINITIES; INHIBITORY COUPLING; PHOSPHOENOLPYRUVATES; PHOSPHOFRUCTOKINASE; PROTEIN DATA BANK; SUBSTRATE-BINDING;

BACTERIOLOGY; BINDING ENERGY; CRYSTAL STRUCTURE; HYDROGEN BONDS; PROTEINS; SUBSTRATES;

INTERFACES (MATERIALS);

6 PHOSPHOFRUCTOKINASE; DIMER; GLYCOLIC ACID; PHOSPHOENOLPYRUVATE; PHOSPHOGLYCOLIC ACID; PROTEIN; UNCLASSIFIED DRUG;

ALLOSTERISM; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; DATA BASE; ENZYME SUBSTRATE COMPLEX; GEOBACILLUS STEAROTHERMOPHILUS; HETEROTROPHY; HYDROGEN BOND; LIGAND BINDING; NUCLEOTIDE SEQUENCE; OPTICAL ROTATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DATA BANK; PROTEIN PURIFICATION; QUATERNARY (PERIOD); WILD TYPE;

ALLOSTERIC REGULATION; ALLOSTERIC SITE; BACTERIAL PROTEINS; BINDING SITES; FRUCTOSEPHOSPHATES; GEOBACILLUS STEAROTHERMOPHILUS; HYDROGEN BONDING; KINETICS; LIGANDS; PHOSPHOENOLPYRUVATE; PHOSPHOFRUCTOKINASES; SPECTROMETRY, FLUORESCENCE;

EID: 84881641454     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi4002503     Document Type: Article

References (31)

1. Blangy, D., Buc, H., and Monod, J. (1968) Kinetics of the allosteric interactions of phosphofructokinase from Escherichia coli J. Mol. Biol. 31, 13-35
2. Monod, J., Wyman, J., and Changeux, J. P. (1965) On the nature of allosteric transitions: A plausible model J. Mol. Biol. 12, 88-118
3. Schirmer, T. and Evans, P. R. (1990) Structural basis of the allosteric behaviour of phosphofructokinase Nature 343, 140-145
4. Evans, P. R. and Hudson, P. J. (1979) Structure and control of phosphofructokinase from Bacillus stearothermophilus Nature 279, 500-504
5. Evans, P. R., Farrants, G. W., and Hudson, P. J. (1981) Phosphofructokinase: Structure and control Philos. Trans. R. Soc., B 293, 53-62
6. Krauss, G. (2001) Biochemistry of signal transduction and regulation, 2nd ed., Wiley-VCH, Weinheim, Germany.
7. Voet, D., Voet, J. G., and Pratt, C. W. (2008) Fundamentals of biochemistry: Life at the molecular level, 3rd ed., John Wiley & Sons, Hoboken, NJ.
8. Reinhart, G. D. (2004) Quantitative analysis and interpretation of allosteric behavior Methods Enzymol. 380, 187-203
9. Kimmel, J. L. and Reinhart, G. D. (2000) Reevaluation of the accepted allosteric mechanism of phosphofructokinase from Bacillus stearothermophilus Proc. Natl. Acad. Sci. U.S.A. 97, 3844-3849
10. Ortigosa, A. D., Kimmel, J. L., and Reinhart, G. D. (2004) Disentangling the web of allosteric communication in a homotetramer: Heterotropic inhibition of phosphofructokinase from Bacillus stearothermophilus Biochemistry 43, 577-586
11. French, B. A., Valdez, B. C., Younathan, E. S., and Chang, S. H. (1987) High-level expression of Bacillus stearothermophilus 6-phosphofructo-1-kinase in Escherichia coli Gene 59, 279-283
12. Lovingshimer, M. R., Siegele, D., and Reinhart, G. D. (2006) Construction of an inducible, pfkA and pfkB deficient strain of Escherichia coli for the expression and purification of phosphofructokinase from bacterial sources Protein Expression Purif. 46, 475-482
13. Valdez, B. C., French, B. A., Younathan, E. S., and Chang, S. H. (1989) Site-directed mutagenesis in Bacillus stearothermophilus fructose-6-phosphate 1-kinase. Mutation at the substrate-binding site affects allosteric behavior J. Biol. Chem. 264, 131-135
14. Riley-Lovingshimer, M. R. and Reinhart, G. D. (2001) Equilibrium binding studies of a tryptophan-shifted mutant of phosphofructokinase from Bacillus stearothermophilus Biochemistry 40, 3002-3008
15. Otwinowski, Z., Minor, W., and Carter, C. W., Jr. (1997) Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326
16. Pflugrath, J. W. (1999) The finer things in X-ray diffraction data collection Acta Crystallogr. D55, 1718-1725
17. McCoy, A. J. (2007) Solving structures of protein complexes by molecular replacement with Phaser Acta Crystallogr. D63, 32-41
18. Adams, P. D., Grosse-Kunstleve, R. W., Hung, L. W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., and Terwilliger, T. C. (2002) PHENIX: Building new software for automated crystallographic structure determination Acta Crystallogr. D58, 1948-1954
19. Selvanayagam, S., Welmurugan, D., and Yamane, T. (2006) Iterative ACORN as a high throughput tool in structural genomics Indian J. Biochem. Biophys. 43, 211-216
20. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement Acta Crystallogr. D57, 122-133
21. Emsley, P. and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics Acta Crystallogr. D60, 2126-2132
22. Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., III, Snoeyink, J., Richardson, J. S., and Richardson, D. C. (2007) MolProbity: All-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res. 35, W375-W383
23. Hill, A. V. (1910) A new mathematical treatment of changes of ionic concentration in muscle and nerve under the action of electric currents, with a theory as to their mode of excitation J. Physiol. 40, 190-224
24. Reinhart, G. D. (1983) The determination of thermodynamic allosteric paramters of an enzyme undergoing steady-state turnover Arch. Biochem. Biophys. 224, 389-401
25. Reinhart, G. D. (1988) Linked-function origins of cooperativity in a symmetrical dimer Biophys. Chem. 30, 159-172
26. Mosser, R., Reddy, M. C., Bruning, J. B., Sacchettini, J. C., and Reinhart, G. D. (2012) Structure of the apo form of Bacillus stearothermophilus phosphofructokinase Biochemistry 51, 769-775
27. Braxton, B. L., Tlapak-Simmons, V. L., and Reinhart, G. D. (1994) Temperature-induced inversion of allosteric phenomena J. Biol. Chem. 269, 47-50
28. Tlapak-Simmons, V. L. and Reinhart, G. D. (1994) Comparison of the inhibition by phospho(enol)pyruvate and phosphoglycolate of phosphofructokinase from B. stearothermophilus Arch. Biochem. Biophys. 308, 226-230
29. Gunasekaran, K., Ma, B., and Nussinov, R. (2004) Is allostery an intrinsic property of all dynamic proteins? Proteins: Struct., Funct., Bioinf. 57, 433-443
30. Swain, J. F. and Gierasch, L. M. (2006) The changing landscape of protein allostery Curr. Opin. Struct. Biol. 16, 102-108
31. Kolb, D. A. and Weber, G. (1975) Cooperativity of binding of anilinonaphthalenesulfonate to serum albumin induced by a second ligand Biochemistry 14, 4476-4481