Unsupervised inference of arbor morphology progression for microglia from confocal microscope images

Proceedings - International Symposium on Biomedical Imaging

Volumn , Issue , 2013, Pages 1356-1359

  Xu, Yan ^a   Savelonas, Michalis ^a   Qiu, Peng ^b   Trett, Kristen ^c   Shain, William ^c   Roysam, Badrinath ^a  

^a UNIVERSITY OF HOUSTON   (United States)

^b UNIVERSITY OF TEXAS   (United States)

^c SEATTLE CHILDREN S RESEARCH INSTITUTE   (United States)

Author keywords

Arbor Analytics; Biomedical Image Analysis; Sample Progression Analysis

Indexed keywords

AGGLOMERATIVE CLUSTERING ALGORITHM; ARBOR ANALYTICS; BIOMEDICAL IMAGE ANALYSIS; CENTRAL NERVOUS SYSTEMS; CONFOCAL MICROSCOPE IMAGES; NEURAL RECORDINGS; PROGRESSION ANALYSIS; STRUCTURAL SIMILARITY;

CORRELATION METHODS; MEDICAL IMAGING; NEUROPHYSIOLOGY;

MORPHOLOGY;

EID: 84881626434     PISSN: 19457928     EISSN: 19458452     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2013.6556784     Document Type: Conference Paper

References (8)

1. D.H. Szarowski, M.D. Andersen, S.Retterer, A.J. Spence, M. Isaacson, H.G. Craighead, J.N. Turner, and W. Shain, "Brain responses to micro-machined silicon devices" Brain Research, vol. 983, no. 1-2, pp. 23-25, 2003.
2. R.A. Onas, T.F. Yuan, Y.X. Liang, J.B. Jonas, and DKC. Tay, "The spider effect: morphological and orienting classification of microglia in response to stimuli in vivo," PLoS ONE, vol. 7, no. 2, 2012.
3. Y. Rouchdy, and L.D. Cohen, "Image Segmentation by Geodesic Voting. Application to the Extraction of Tree Structures from Confocal Microscope Images," in Proc. Int. Conf. Pattern Recognition (ICPR), 2008, pp. 1-5.
4. R. Scorcioni, S. Polavaram, and G.A. Ascoli, "L-measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies," Nature Protocols, vol. 3, no. 5, pp. 866-876, 2008. (Pubitemid 351639030)
5. P. Qiu, A.J. Gentles, and S.K. Plevritis, "Discovering biological progression underlying microarray samples," PLoSComputBiol, vol. 7, no. 4, 2011.
6. J. Luisi, A. Narayanaswamy, Z. Galbreath, and B. Roysam. "The farsight trace editor: An open source tool for 3-d inspection and efficient pattern analysis aided editing of automated neuronal reconstructions," Neuroinform, vol. 9, pp. 305-315, 2011.
7. C.S. Bjornsson, G. Lin, Y.A. Kofahi, A. Narayanaswamy, K.L. Smith, W. Shain, and B. Roysam, "Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue", J. Neuroscience Methods, vol. 170, pp. 165-178, 2008.
8. Y.Rubner, C.Tomasi, and L.J. Guibas, "The earthmover's distance as a metric for image retrieval," Int. J. Comput. Vision, vol. 40, no. 2, pp. 99-121, 2000. (Pubitemid 32136368)