메뉴 건너뛰기




Volumn 55, Issue 2, 2013, Pages 69-74

A high-plex PCR approach for massively parallel sequencing

Author keywords

Disease gene screening; FFPE tissue; Hi Plex; High plex PCR; Massively parallel sequencing; Molecular diagnostics; Sequence screening

Indexed keywords

PRIMER DNA; DNA; DNA BINDING PROTEIN; NUCLEAR PROTEIN; PALB2 PROTEIN, HUMAN; TUMOR SUPPRESSOR PROTEIN; XRCC2 PROTEIN, HUMAN;

EID: 84881499744     PISSN: 07366205     EISSN: 19409818     Source Type: Journal    
DOI: 10.2144/000114052     Document Type: Article
Times cited : (48)

References (26)
  • 1
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generat ion sequencing technology on genetics
    • Mardis, E.R. 2008. The impact of next-generat ion sequencing technology on genetics. Trends Genet. 24:133-141.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 2
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and H. Ji. 2008. Next-generation DNA sequencing. Nat. Biotechnol. 26:1135-1145.
    • (2008) Nat. Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 4
    • 84860389647 scopus 로고    scopus 로고
    • Rare, evolutionarily unlikely missense substitutions in CHEK2 contribute to breast cancer susceptibility: Results from a breast cancer family registry case-control mutation-screening study
    • Le Calvez-Kelm, F., F. Lesueur, F. Damiola, M. Vallee, C. Voegele, D. Babikyan, G. Durand, N. Forey, et al. 2011. Rare, evolutionarily unlikely missense substitutions in CHEK2 contribute to breast cancer susceptibility: results from a breast cancer family registry case-control mutation-screening study. Breast Cancer Res. 13:R6.
    • (2011) Breast Cancer Res , vol.13
    • Le Calvez-Kelm, F.1    Lesueur, F.2    Damiola, F.3    Vallee, M.4    Voegele, C.5    Babikyan, D.6    Durand, G.7    Forey, N.8
  • 6
    • 84855564475 scopus 로고    scopus 로고
    • Next-generation sequencing for cancer diagnostics: A practical perspective
    • Meldrum, C., M.A. Doyle, and R.W. Tothill. 2011. Next-generation sequencing for cancer diagnostics: a practical perspective. Clin. Biochem. Rev. 32:177-195.
    • (2011) Clin. Biochem. Rev , vol.32 , pp. 177-195
    • Meldrum, C.1    Doyle, M.A.2    Tothill, R.W.3
  • 7
    • 80054903230 scopus 로고    scopus 로고
    • Review of massively parallel DNA sequencing technologies
    • Moorthie, S., C.J. Mattocks, and C.F. Wright. 2011. Review of massively parallel DNA sequencing technologies. The HUGO journal 5:1-12.
    • (2011) The HUGO Journal , vol.5 , pp. 1-12
    • Moorthie, S.1    Mattocks, C.J.2    Wright, C.F.3
  • 9
    • 84860619729 scopus 로고    scopus 로고
    • Possible differentiation of cerebral glioblastoma into pleomorphic xanthoastrocytoma: An unusual case in an infant
    • Yang, M.M., A. Singhal, S.R. Rassekh, S. Yip, P. Eydoux, and C. Dunham. 2012. Possible differentiation of cerebral glioblastoma into pleomorphic xanthoastrocytoma: an unusual case in an infant. Journal of neurosurgery. Pediatrics 9:517-523.
    • (2012) Journal of Neurosurgery. Pediatrics , vol.9 , pp. 517-523
    • Yang, M.M.1    Singhal, A.2    Rassekh, S.R.3    Yip, S.4    Eydoux, P.5    Dunham, C.6
  • 10
    • 84864318773 scopus 로고    scopus 로고
    • Germline mutations in the DNA damage response genes BRCA1, BRCA2, BARD1 and TP53 in patients with therapy related myeloid neoplasms
    • Schulz, E., A. Valentin, P. Ulz, C. Beham-Schmid, K. Lind, V. Rupp, H. Lackner, A. Wolfler, et al. 2012. Germline mutations in the DNA damage response genes BRCA1, BRCA2, BARD1 and TP53 in patients with therapy related myeloid neoplasms. J. Med. Genet. 49:422-428.
    • (2012) J. Med. Genet , vol.49 , pp. 422-428
    • Schulz, E.1    Valentin, A.2    Ulz, P.3    Beham-Schmid, C.4    Lind, K.5    Rupp, V.6    Lackner, H.7    Wolfler, A.8
  • 12
    • 65849458558 scopus 로고    scopus 로고
    • Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis
    • Schweiger, M.R., M. Kerick, B. Timmermann, M.W. Albrecht, T. Borodina, D. Parkhomchuk, K. Zatloukal, and H. Lehrach. 2009. Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. PLoS ONE 4:e5548.
    • (2009) PLoS ONE , vol.4
    • Schweiger, M.R.1    Kerick, M.2    Timmermann, B.3    Albrecht, M.W.4    Borodina, T.5    Parkhomchuk, D.6    Zatloukal, K.7    Lehrach, H.8
  • 16
    • 0033287525 scopus 로고    scopus 로고
    • Design and analysis issues in a population-based, case-control-family study of the genetic epidemiology of breast cancer and the Co-operative Family Registry for Breast Cancer Studies (CFRBCS)
    • Hopper, J.L., G. Chenevix-Trench, D.J. Jolley, G.S. Dite, M.A. Jenkins, D.J. Venter, M.R. McCredie, and G.G. Giles. 1999. Design and analysis issues in a population-based, case-control-family study of the genetic epidemiology of breast cancer and the Co-operative Family Registry for Breast Cancer Studies (CFRBCS). J. Natl. Cancer Inst. Monogr. 25:95-100.
    • (1999) J. Natl. Cancer Inst. Monogr , vol.25 , pp. 95-100
    • Hopper, J.L.1    Chenevix-Trench, G.2    Jolley, D.J.3    Dite, G.S.4    Jenkins, M.A.5    Venter, D.J.6    McCredie, M.R.7    Giles, G.G.8
  • 17
    • 0043122986 scopus 로고    scopus 로고
    • CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design
    • Rose, T.M., J.G. Henikoff, and S. Henikoff. 2003. CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design. Nucleic Acids Res. 31:3763-3766.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3763-3766
    • Rose, T.M.1    Henikoff, J.G.2    Henikoff, S.3
  • 18
    • 24944534978 scopus 로고    scopus 로고
    • Real-time PCR for mRNA quantitation
    • Wong, M.L. and J.F. Medrano. 2005. Real-time PCR for mRNA quantitation. BioTechniques 39:75-85.
    • (2005) BioTechniques , vol.39 , pp. 75-85
    • Wong, M.L.1    Medrano, J.F.2
  • 20
    • 0029873641 scopus 로고    scopus 로고
    • Reduced extension temperatures required for PCR amplification of extremely A+T-rich DNA
    • Su, X.Z., Y. Wu, C.D. Sifri, and T.E. Wellems. 1996. Reduced extension temperatures required for PCR amplification of extremely A+T-rich DNA. Nucleic Acids Res. 24:1574-1575.
    • (1996) Nucleic Acids Res , vol.24 , pp. 1574-1575
    • Su, X.Z.1    Wu, Y.2    Sifri, C.D.3    Wellems, T.E.4
  • 22
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacif ic Biosciences and Illumina MiSeq sequencers
    • Quail, M.A., M. Smith, P. Coupland, T.D. Otto, S.R. Harris, T.R. Connor, A. Bertoni, H.P. Swerdlow, and Y. Gu. 2012. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacif ic Biosciences and Illumina MiSeq sequencers. BMC Genomics 13:341.
    • (2012) BMC Genomics , vol.13 , pp. 341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3    Otto, T.D.4    Harris, S.R.5    Connor, T.R.6    Bertoni, A.7    Swerdlow, H.P.8    Gu, Y.9
  • 23
    • 34547567980 scopus 로고    scopus 로고
    • OligoCalc: An online ol igonucleot ide properties calculator
    • Kibbe, W.A. 2007. OligoCalc: an online ol igonucleot ide properties calculator. Nucleic Acids Res. 35:W43-W46.
    • (2007) Nucleic Acids Res , vol.35
    • Kibbe, W.A.1
  • 24
    • 70349258441 scopus 로고    scopus 로고
    • Multiplex Manager 1.0: A cross-platform computer program that plans and optimizes multiplex PCR
    • Holleley, C.E. and P.G. Geerts. 2009. Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. BioTechniques 46:511-517.
    • (2009) BioTechniques , vol.46 , pp. 511-517
    • Holleley, C.E.1    Geerts, P.G.2
  • 26
    • 36048959789 scopus 로고    scopus 로고
    • An iterative method for selecting degenerate multiplex PCR primers
    • Souvenir, R., J. Buhler, G. Stormo, and W. Zhang. 2007. An iterative method for selecting degenerate multiplex PCR primers. Methods Mol. Biol. 402:245-268.
    • (2007) Methods Mol. Biol , vol.402 , pp. 245-268
    • Souvenir, R.1    Buhler, J.2    Stormo, G.3    Zhang, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.