-
1
-
-
0842324785
-
The Nucleosome: From Genomic Organization to Genomic Regulation
-
DOI 10.1016/S0092-8674(04)00044-3
-
Khorasanizadeh S (2004) The nucleosome: from genomic organization to genomic regulation. Cell 116: 259-272 (Pubitemid 38167316)
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 259-272
-
-
Khorasanizadeh, S.1
-
2
-
-
33847070442
-
The Role of Chromatin during Transcription
-
DOI 10.1016/j.cell.2007.01.015, PII S0092867407001092
-
Li B, Carey M, Workman JL (2007) The role of chromatin during transcription. Cell 128: 707-719 (Pubitemid 46273570)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
3
-
-
79953163378
-
Chromatin higher-order structures and gene regulation
-
Li G, Reinberg D (2011) Chromatin higher-order structures and gene regulation. Curr Opin Genet Dev 21: 175-186
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 175-186
-
-
Li, G.1
Reinberg, D.2
-
4
-
-
27844543263
-
Archaeal chromatin proteins: Different structures but common function?
-
DOI 10.1016/j.mib.2005.10.007, PII S1369527405001633, Growth Development
-
Sandman K, Reeve JN (2005) Archaeal chromatin proteins: different structures but common function? Curr Opin Microbiol 8: 656-661 (Pubitemid 41643033)
-
(2005)
Current Opinion in Microbiology
, vol.8
, Issue.6
, pp. 656-661
-
-
Sandman, K.1
Reeve, J.N.2
-
5
-
-
84872613033
-
Chromatin is an ancient innovation conserved between Archaea and Eukarya
-
Ammar R, Torti D, Tsui K, Gebbia M, Durbic T, Bader GD, Giaever G, Nislow C (2012) Chromatin is an ancient innovation conserved between Archaea and Eukarya. elife 1: e00078
-
(2012)
Elife
, vol.1
-
-
Ammar, R.1
Torti, D.2
Tsui, K.3
Gebbia, M.4
Durbic, T.5
Bader, G.D.6
Giaever, G.7
Nislow, C.8
-
6
-
-
0034644722
-
Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus
-
Decanniere K, Babu AM, Sandman K, Reeve JN, Heinemann U (2000) Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus. J Mol Biol 303: 35-47
-
(2000)
J Mol Biol
, vol.303
, pp. 35-47
-
-
Decanniere, K.1
Babu, A.M.2
Sandman, K.3
Reeve, J.N.4
Heinemann, U.5
-
7
-
-
77949874234
-
Histone variants-ancient wrap artists of the epigenome
-
Talbert PB, Henikoff S (2010) Histone variants-ancient wrap artists of the epigenome. Nat Rev Mol Cell Biol 11: 264-275
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
8
-
-
0028604578
-
Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus
-
Sandman K, Grayling RA, Dobrinski B, Lurz R, Reeve JN (1994) Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus. Proc Natl Acad Sci USA 91: 12624-12628
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 12624-12628
-
-
Sandman, K.1
Grayling, R.A.2
Dobrinski, B.3
Lurz, R.4
Reeve, J.N.5
-
9
-
-
0030731459
-
Archaeal nucleosomes
-
DOI 10.1073/pnas.94.23.12633
-
Pereira SL, Grayling RA, Lurz R, Reeve JN (1997) Archaeal nucleosomes. Proc Natl Acad Sci USA 94: 12633-12637 (Pubitemid 27492580)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.23
, pp. 12633-12637
-
-
Pereira, S.L.1
Grayling, R.A.2
Lurz, R.3
Reeve, J.N.4
-
10
-
-
79551657459
-
Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis
-
Maruyama H et al (2011) Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis. Mol Biol Cell 22: 386-398
-
(2011)
Mol Biol Cell
, vol.22
, pp. 386-398
-
-
Maruyama, H.1
-
11
-
-
79953136775
-
Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing
-
Kent NA, Adams S, Moorhouse A, Paszkiewicz K (2011) Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing. Nucleic Acids Res 39: e26
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kent, N.A.1
Adams, S.2
Moorhouse, A.3
Paszkiewicz, K.4
-
12
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260 (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
13
-
-
78651477233
-
High-resolution genome-wide mapping of the primary structure of chromatin
-
Zhang Z, Pugh BF (2011) High-resolution genome-wide mapping of the primary structure of chromatin. Cell 144: 175-186
-
(2011)
Cell
, vol.144
, pp. 175-186
-
-
Zhang, Z.1
Pugh, B.F.2
-
15
-
-
74949110964
-
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
-
Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N (2010) High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 20: 90-100
-
(2010)
Genome Res
, vol.20
, pp. 90-100
-
-
Weiner, A.1
Hughes, A.2
Yassour, M.3
Rando, O.J.4
Friedman, N.5
-
16
-
-
0037163112
-
Archaeal histone tetramerization determines DNA affinity and the direction of DNA supercoiling
-
DOI 10.1074/jbc.M203674200
-
Marc F, Sandman K, Lurz R, Reeve JN (2002) Archaeal histone tetramerization determines DNA affinity and the direction of DNA supercoiling. J Biol Chem 277: 30879-30886 (Pubitemid 34970788)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.34
, pp. 30879-30886
-
-
Marc, F.1
Sandman, K.2
Lurz, R.3
Reeve, J.N.4
-
17
-
-
0038575389
-
Archaeal chromatin and transcription
-
DOI 10.1046/j.1365-2958.2003.03439.x
-
Reeve JN (2003) Archaeal chromatin and transcription. Mol Microbiol 48: 587-598 (Pubitemid 36819047)
-
(2003)
Molecular Microbiology
, vol.48
, Issue.3
, pp. 587-598
-
-
Reeve, J.N.1
-
18
-
-
0035659506
-
The archaeal histone-fold protein HMf organizes DNA into bona fide chromatin fibers
-
DOI 10.1016/S0969-2126(01)00682-7, PII S0969212601006827
-
Tomschik M, Karymov MA, Zlatanova J, Leuba SH (2001) The archaeal histone-fold protein HMf organizes DNA into bona fide chromatin fibers. Structure 9: 1201-1211 (Pubitemid 34025054)
-
(2001)
Structure
, vol.9
, Issue.12
, pp. 1201-1211
-
-
Tomschik, M.1
Karymov, M.A.2
Zlatanova, J.3
Leuba, S.H.4
-
19
-
-
0033379115
-
DNA repeats and archaeal nucleosome positioning
-
DOI 10.1016/S0923-2508(99)00122-9
-
Bailey KA, Reeve JN (1999) DNA repeats and archaeal nucleosome positioning. Res Microbiol 150: 701-709 (Pubitemid 30035890)
-
(1999)
Research in Microbiology
, vol.150
, Issue.9-10
, pp. 701-709
-
-
Bailey, K.A.1
Reeve, J.N.2
-
20
-
-
0034644767
-
Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution
-
Bailey KA, Pereira SL, Widom J, Reeve JN (2000) Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution. J Mol Biol 303: 25-34
-
(2000)
J Mol Biol
, vol.303
, pp. 25-34
-
-
Bailey, K.A.1
Pereira, S.L.2
Widom, J.3
Reeve, J.N.4
-
21
-
-
33644876685
-
The UCSC archaeal genome browser
-
Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM (2006) The UCSC archaeal genome browser. Nucleic Acids Res 34:D: 407-410
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 407-410
-
-
Schneider, K.L.1
Pollard, K.S.2
Baertsch, R.3
Pohl, A.4
Lowe, T.M.5
-
22
-
-
13544250517
-
Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
-
DOI 10.1101/gr.3003105
-
Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T (2005) Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15: 352-363 (Pubitemid 40467776)
-
(2005)
Genome Research
, vol.15
, Issue.3
, pp. 352-363
-
-
Fukui, T.1
Atomi, H.2
Kanai, T.3
Matsumi, R.4
Fujiwara, S.5
Imanaka, T.6
-
23
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
24
-
-
70349739736
-
The integrated genome browser: Free software for distribution and exploration of genome-scale datasets
-
Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE (2009) The integrated genome browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25: 2730-2731
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard, Jr.S.G.3
Raja, A.4
Loraine, A.E.5
-
25
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM (2009) Bidirectional promoters generate pervasive transcription in yeast. Nature 457: 1033-1037
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Münster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
|