Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 32, 2013, Pages 13198-13203

  Koppolu, Ravi ^a   Anwar, Nadia ^b   Sakuma, Shun ^b   Tagiri, Akemi ^b   Lundqvist, Udda ^c   Pourkheirandish, Mohammad ^b   Rutten, Twan ^d   Seiler, Christiane ^d   Himmelbach, Axel ^a   Ariyadasa, Ruvini ^a   Youssef, Helmy Mohamad ^a,e   Stein, Nils ^a   Sreenivasulu, Nese ^d,f,g   Komatsuda, Takao ^b   Schnurbusch, Thorsten ^a  

^a Leibniz Institute for Plant Genetic Research and Cultivated Crops   (Germany)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c Nordic Genetic Resource Center   (Sweden)

^d LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^e CAIRO UNIVERSITY   (Egypt)

^f Research Group Abiotic Stress Genomics   (Germany)

^g INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Cytokinin; EGG APPARATUS1; Grain number; Yield potential

Indexed keywords

MESSENGER RNA;

ARTICLE; BARLEY; CONTROLLED STUDY; FERTILITY; GENE FUNCTION; GENE MUTATION; GENETIC ASSOCIATION; IN SITU HYBRIDIZATION; MICROARRAY ANALYSIS; NONHUMAN; PLANT GENE; PRIORITY JOURNAL; SPIKELET; VRS4 GENE;

CYTOKININ; EGG APPARATUS1; GRAIN NUMBER; YIELD POTENTIAL;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; FERTILITY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; HAPLOTYPES; HORDEUM; INFLORESCENCE; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; PHYLOGENY; PLANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 84881448887     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1221950110     Document Type: Article

References (36)

1. Kellogg EA (2007) Floral displays: Genetic control of grass inflorescences. Curr Opin Plant Biol 10(1):26-31.
2. Vollbrecht E, Springer PS, Goh L, Buckler ES, Martienssen R (2005) Architecture of floral branch systems in maize and related grasses. Nature 436(7054):1119-1126.
3. Bortiri E, et al. (2006) ramosa2 encodes a LATERALORGANBOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell 18(3):574-585.
4. Gallavotti A, et al. (2010) The control of axillary meristem fate in the maize ramosa pathway. Development 137(17):2849-2856.
5. Satoh-Nagasawa N, Nagasawa N, Malcomber S, Sakai H, Jackson D (2006) A trehalose metabolic enzyme controls inflorescence architecture in maize. Nature 441(7090): 227-230.
6. Sreenivasulu N, Schnurbusch T (2012) A genetic playground for enhancing grain number in cereals. Trends Plant Sci 17(2):91-101.
7. Forster BP, et al. (2007) The barley phytomer. Ann Bot (Lond) 100(4):725-733.
8. Mansfeld R (1950) Das morphologische System der Saatgerste, Hordeum vulgare L.s.l. Der Züchter 20:8-24.
9. Komatsuda T, et al. (2007) Six-rowed barley originated from a mutation in a homeodomain- leucine zipper I-class homeobox gene. Proc Natl Acad Sci USA 104(4):1424-1429.
10. Ramsay L, et al. (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nat Genet 43(2):169-172.
11. Mayer KF, et al. (2011) Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23(4):1249-1263.
12. Shuai B, Reynaga-Peña CG, Springer PS (2002) The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol 129(2):747-761.
13. Sakuma S, et al. (2013) Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley. New Phytol 197(3):939-948.
14. Schluepmann H, Berke L, Sanchez-Perez GF (2012) Metabolism control over growth: A case for trehalose-6-phosphate in plants. J Exp Bot 63(9):3379-3390.
15. Eveland AL, Jackson DP (2012) Sugars, signalling, and plant development. J Exp Bot 63(9):3367-3377.
16. Márton ML, Cordts S, Broadhvest J, Dresselhaus T (2005) Micropylar pollen tube guidance by egg apparatus 1 of maize. Science 307(5709):573-576.
17. Kurakawa T, et al. (2007) Direct control of shoot meristem activity by a cytokininactivating enzyme. Nature 445(7128):652-655.
18. Rupp H-M, Frank M, Werner T, Strnad M, Schmülling T (1999) Increased steady state mRNA levels of the STM and KNAT1 homeobox genes in cytokinin overproducing Arabidopsis thaliana indicate a role for cytokinins in the shoot apical meristem. Plant J 18(5):557-563.
19. Yanai O, et al. (2005) Arabidopsis KNOXI proteins activate cytokinin biosynthesis. Curr Biol 15(17):1566-1571.
20. Sakamoto T, et al. (2006) Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol 142(1):54-62.
21. Ashikari M, et al. (2005) Cytokinin oxidase regulates rice grain production. Science 309(5735):741-745.
22. Gälweiler L, et al. (1998) Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282(5397):2226-2230.
23. Malcomber ST, Preston JC, Reinheimer R, Kossuth J, Kellogg EA (2006) Developmental gene evolution and the origin of grass inflorescence diversity. Adv Bot Res 44:425-481.
24. Sigmon B, Vollbrecht E (2010) Evidence of selection at the ramosa1 locus during maize domestication. Mol Ecol 19(7):1296-1311.
25. Whipple CJ, et al. (2011) grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proc Natl Acad Sci USA 108(33):E506-E512.
26. Husbands A, Bell EM, Shuai B, Smith HM, Springer PS (2007) LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Nucleic Acids Res 35(19):6663-6671.
27. Eveland AL, et al. (2010) Digital gene expression signatures for maize development. Plant Physiol 154(3):1024-1039.
28. Close TJ, et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
29. Sato K, Nankaku N, Takeda K (2009) A high-density transcript linkage map of barley derived from a single population. Heredity (Edinb) 103(2):110-117.
30. Vincze T, Posfai J, Roberts RJ (2003) NEBcutter: A program to cleave DNA with restriction enzymes. Nucleic Acids Res 31(13):3688-3691.
31. Neff MM, Turk E, Kalishman M (2002) Web-based primer design for single nucleotide polymorphism analysis. Trends Genet 18(12):613-615.
32. Meyer M, Stenzel U, Hofreiter M (2008) Parallel tagged sequencing on the 454 platform. Nat Protoc 3(2):267-278.
33. Steuernagel B, et al. (2009) De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 10:547.
34. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268(1):78-94.
35. Tamura K, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739.
36. Lolas IB, et al. (2010) The transcript elongation factor FACT affects Arabidopsis vegetative and reproductive development and genetically interacts with HUB1/2. Plant J 61(4):686-697.