Matching and visualization of multiple overlapping clusterings of microarray data

2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007

Volumn , Issue , 2007, Pages 121-126

  Krumpelman, Chase ^a   Ghosh, Joydeep ^a  

^a The University of Texas at Austin   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL INTELLIGENCE; BIOINFORMATICS; DATA VISUALIZATION; VISUALIZATION;

ALIGNMENT TECHNIQUE; BIOLOGICAL PROCESS; CLUSTERINGS; MICROARRAY DATA; OVERLAPPING CLUSTERING;

CLUSTERING ALGORITHMS;

EID: 84881233732     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/cibcb.2007.4221213     Document Type: Conference Paper

References (15)

1. T. Hastie, R. Tibshirani, M. B. Eisen, A. Alizadeh, R. Levy, L. Staudt, W. C. Chan, D. Botstein, and P. Brown, "'gene shaving' as a method for identifying distinct sets of genes with similar expression paterns," Genome Biology, vol. 2, pp. 0003.1-0003.21, 2000. [Online]. Available: http://genomebiology.com/2000/1/2/research/0003
2. E. Segal, A. Battle, and D. Koller, "Decomposing gene expression into cellular processes," in Proc. 8th Pacific Symposium on Biocomputing (PSB), Kaua'i, Jan 2003.
3. A. Banerjee, S. Basu, C. Krumpelman, J. Ghosh, and R. Mooney, "Model based overlapping clustering," in Proceedings of KDD2005, 2005, pp. 100-106.
4. L. Lazzeroni and A. B. Owen, "Plaid models for gene expression data," Statistica Sinica, vol. 12, no. 1, pp. 61-86, 2002.
5. L. Hubert and P. Arabie, "Comparing partitions," Journal of Classification, vol. 2, pp. 193-218, 1985.
6. L. M. Collins and C. W. Dent, "Omega: A general formulation of the rand index of cluster recovery suitable for non-disjoint solutions," Multivariate Behavioral Research, vol. 23, no. 2, pp. 203-230, 1988.
7. X. Li and R. C. Dubes, "The selection of significant dichotomous features," in Proceedings of the Seventh International Conference on Pattern Matching, 1984, pp. 260-264.
8. -, "The first stage in two-stage template matching," in IEEE Transactions on Pattern Analysis and Machine Intelligence PAMI 7, 1985, pp. 700-707. (Pubitemid 16539425)
9. D. Gusfield and R. W. Irving, The Stable Marriage Problem: Structure and Algorithms. Cambridge, MA: MIT Press, 1989.
10. D. Gale and L. S. Shapley, "College admissions and the stability of marriage," American Mathematics Monthly, vol. 69, pp. 9-14, 1962.
11. J. C. Bezdek, Pattern Recognition with Fuzzy Objective Function Algorithms. Plenum Press, 1981.
12. D. Dembélé and P. Kastner, "Fuzzy c-means method for clustering microarray data," Bioinformatics, vol. 19, no. 8, pp. 973-980, 2003. (Pubitemid 36675818)
13. A. Strehl and J. Ghosh, "Cluster ensembles - a knowledge reuse framework for combining partitionings." in Proc. Conference on Artificial Intelligence (AAAI 2002), July 2002, pp. 93-98.
14. K.-A. Do, R. Nikolova, P. Roebuck, and B. Broom, "GeneClust." [Online]. Available: http://odin.mdacc.tmc.edu/ kim/geneclust/
15. I. Nabney and C. Bishop, "netlab." [Online]. Available: http://www.ncrg.aston.ac.uk/netlab/index.php