Brevifollis gellanilyticus gen. nov., sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART8, 2013, Pages 3075-3078

  Otsuka, Shigeto ^a   Suenaga, Taku ^a   Vu, Hoan Thi ^a   Ueda, Hiroyuki ^a   Yokota, Akira ^b   Senoo, Keishi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GELLAN; MENAQUINONE; RNA 16S;

ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM ISOLATE; BREVIFOLLIS GELLANILYTICUS; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PHYLUM; PRIORITY JOURNAL; SALINITY; VERRUCOMICROBIA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYSACCHARIDES, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VERRUCOMICROBIA; VITAMIN K 2;

EID: 84880977829     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.048793-0     Document Type: Article

References (26)

1. Bergmann, G. T., Bates, S. T., Eilers, K. G., Lauber, C. L., Caporaso, J. G., Walters, W. A., Knight, R. & Fierer, N. (2011). The underrecognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol Biochem 43, 1450-1455.
2. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
3. Hedlund, B. P. (2010). Phylum XXIII. Verrucomicrobia phyl. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 795-841. Edited by N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlund & B. J. Paster. New York: Springer.
4. Hedlund, B. P., Gosink, J. J. & Staley, J. T. (1997). Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter. Antonie van Leeuwenhoek 72, 29-38.
5. Huang, X. & Miller, W. (1991). A time-efficient, linear-space local similarity algorithm. Adv Appl Math 12, 337-357.
6. Janssen, P. H., Yates, P. S., Grinton, B. E., Taylor, P. M. & Sait, M. (2002). Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68, 2391-2396.
7. Katsuta, A., Adachi, K., Matsuda, S., Shizuri, Y. & Kasai, H. (2005). Ferrimonas marina sp. nov. Int J Syst Evol Microbiol 55, 1851-1855.
8. Kielak, A., Rodrigues, J. L. M., Kuramae, E. E., Chain, P. S. G., van Veen, J. A. & Kowalchuk, G. A. (2010). Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil. FEMS Microbiol Ecol 71, 23-33.
9. Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
10. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-147. Edited by E. Stackebrandt & M. Goodfellow. New York: John Wiley & Sons.
11. Martinez-Romero, E. & Caballero-Mellado, J. (1996). Rhizobium phylogenies and bacterial genetic diversity. Crit Rev Plant Sci 15, 113-140.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Otsuka, S., Sudiana, I.-M., Komori, A., Isobe, K., Deguchi, S., Nishiyama, M., Shimizu, H. & Senoo, K. (2008). Community structure of soil bacteria in a tropical rainforest several years after fire. Microbes Environ 23, 49-56.
14. Otsuka, S., Ueda, H., Suenaga, T., Uchino, Y., Hamada, M., Yokota, A. & Senoo, K. (2013). Roseimicrobium gellanilyticum gen. nov., sp. nov., a new member of the class Verrucomicrobiae. Int J Syst Evol Microbiol 63, 1982-1986.
15. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
16. Sangwan, P., Kovac, S., Davis, K. E. R., Sait, M. & Janssen, P. H. (2005). Detection and cultivation of soil verrucomicrobia. Appl Environ Microbiol 71, 8402-8410.
17. Seviour, E. M., Williams, C., DeGrey, B., Soddell, J. A., Seviour, K. C. & Lindrea, K. C. (1994). Studies on filamentous bacteria from Australian activated sludge plants. Water Res 28, 2335-2342.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Staley, J. T. & Mandel, M. (1973). Deoxyribonucleic acid base composition of Prosthecomicrobium and Ancalomicrobium strains. Int J Syst Bacteriol 23, 271-273.
20. Takeda, M., Yoneya, A., Miyazaki, Y., Kondo, K., Makita, H., Kondoh, M., Suzuki, I. & Koizumi, J. (2008). Prosthecobacter fluviatilis sp. nov., which lacks the bacterial tubulin btubA and btubB genes. Int J Syst Evol Microbiol 58, 1561-1565.
21. Ueda, H., Otsuka, S. & Senoo, K. (2010). Bacterial communities constructed in artificial consortia of bacteria and Chlorella vulgaris. Microbes Environ 25, 36-40.
22. Vu, H. T., Otsuka, S., Ueda, H. & Senoo, K. (2010). Cocultivated bacteria can increase or decrease the culture lifetime of Chlorella vulgaris. J Gen Appl Microbiol 56, 413-418.
23. Yoon, J., Yasumoto-Hirose, M., Matsuo, Y., Nozawa, M., Matsuda, S., Kasai, H. & Yokota, A. (2007a). Pelagicoccus mobilis gen. nov., sp. nov., Pelagicoccus albus sp. nov. and Pelagicoccus litoralis sp. nov., three novel members of subdivision 4 within the phylum 'Verrucomicrobia', isolated from seawater by in situ cultivation. Int J Syst Evol Microbiol 57, 1377-1385.
24. Yoon, J., Matsuo, Y., Matsuda, S., Adachi, K., Kasai, H. & Yokota, A. (2007b). Rubritalea spongiae sp. nov. and Rubritalea tangerina sp. nov., two carotenoid-and squalene-producing marine bacteria of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia', isolated from marine animals. Int J Syst Evol Microbiol 57, 2337-2343.
25. Yoon, J., Matsuo, Y., Adachi, K., Nozawa, M., Matsuda, S., Kasai, H. & Yokota, A. (2008). Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 58, 998-1007.
26. Yoon, J., Matsuo, Y., Matsuda, S., Kasai, H. & Yokota, A. (2010). Cerasicoccus maritimus sp. nov. and Cerasicoccus frondis sp. nov., two peptidoglycan-less marine verrucomicrobial species, and description of Verrucomicrobia phyl. nov., nom. rev. J Gen Appl Microbiol 56, 213-222.