The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila

Chromosome Research

Volumn 21, Issue 4, 2013, Pages 345-360

  Liew, Gerald M ^a,b   Foulk, Michael S ^a   Gerbi, Susan A ^a  

^a BROWN UNIVERSITY   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

DNA amplification; ecdysone; ecdysone receptor; immunofluorescence; Sciara coprophila

Indexed keywords

DNA; ECDYSONE; ECDYSONE RECEPTOR; ORIGIN RECOGNITION COMPLEX;

ANIMAL TISSUE; ARTICLE; BINDING SITE; CHROMOSOME PUFF; CONTROLLED STUDY; DIPTERA; FEMALE; GENE AMPLIFICATION; GENE LOCUS; GENETIC TRANSCRIPTION; IMMUNOFLUORESCENCE; LARVA; MALE; NONHUMAN; POLYTENE CHROMOSOME; PRIORITY JOURNAL; PROTEIN BINDING; SALIVARY GLAND;

ANIMALS; BINDING SITES; CHROMOSOMAL PUFFS; DIPTERA; DNA REPLICATION; ECDYSONE; GENETIC LOCI; LARVA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RECEPTORS, STEROID; SALIVARY GLANDS;

BRADYSIA COPROPHILA; FUNGI; NEPTUNIA; SCIARA;

EID: 84880800056     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-013-9360-1     Document Type: Article

References (60)

1. Adelman K, Lis JT (2012) Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet 13:720-731
2. Aggarwal BD, Calvi BR (2004) Chromatin regulates origin activity in Drosophila follicle cells. Nature 430:372-376
3. Amabis DC, Amabis JM (1984a) Effects of ecdysterone in polytene chromosomes of Trichosia pubescens. Dev Biol 102:1-9
4. Amabis DC, Amabis JM (1984b) Hormonal control of gene amplification and transcription in the salivary gland chromosomes of Trichosia pubescens. Dev Biol 102:10-20
5. Ashburner M (1972) Patterns of puffing activity in the salivary gland chromosomes of Drosophila VI. Induction by ecdysone in salivary glands of Drosophila melanogaster cultured in vitro. Chromosoma 38:225-281
6. Ashburner M, Chihara C, Meltzer P, Richards G (1974) Temporal control of puffing activity in polytene chromosomes. Cold Spring Harb Symp Quant Biol 38:655-662
7. Beckstead RB, Lam G, Thummel CS (2005) The genomic response to 20-hydroxyecdysone at the onset of Drosophila metamorphosis. Genome Biol 6:R99
8. Belyaeva ES, Vlassova IE, Biyasheva ZM, Kalpakov VT, Richards G, Zhimulev IF (1981) Cytogenetics analysis of the 2B3-4-2B11 region of the X chromosome of Drosophila melanogaster. Chromosoma 84:207-219
9. Bielinsky AK, Blitzblau H, Beall EL, Ezrokhi M, Smith HS, Botchan MR, Gerbi SA (2001) Origin recognition complex binding to a metazoan replication origin. Curr Biol 11:1427-1431
10. Bienz-Tadmor B, Smith HS, Gerbi SA (1991) The promoter of DNA puff II/9-1 of Sciara coprophila is inducible by ecdysone in late prepupal salivary glands of Drosophila melanogaster. Cell Regul 2:875-888
11. Breuer ME, Pavan C (1955) Behavior of polytene chromosomes of Rhynchosciara angelae at different stages of larval development. Chromosoma 7:371-386
12. Candido-Silva JA, de Carvalho DP, Coelho GR, de Almeida JC (2008) Indirect immune detection of ecdysone receptor (EcR) during the formation of DNA puffs in Bradysia hygida (Diptera, Sciaridae). Chromosome Res 16:609-622
13. Clever U (1961) Gene activity in the giant chromosomes of Chironomus tentans and its relation to development I. Gene activation by ecdysone. Chromosoma 12:607-675
14. Clever U (1965) Puffing changes in incubated and in ecdysone treated Chironomus tentans salivary glands. Chromosoma 17:309-322
15. Clever U, Karlson P (1960) Induction of puff changes in the salivary gland chromosomes of Chironomus tentans by ecdysone. Exp Cell Res 20:623-626
16. Crouse HV (1968) The role of ecdysone on DNA-puff formation and DNA synthesis in the polytene chromosomes in Sciara coprophila. Proc Natl Acad Sci USA 61:971-978
17. de Almeida JC (1997) A 28-fold increase in secretory protein synthesis is associated with DNA puff activity in the salivary gland of Bradysia hygida (Diptera, Sciaridae). Braz J Med Biol Res 30:605-614
18. DiBartolomeis SM, Gerbi SA (1989) Molecular characterization of DNA puff II/9A genes in Sciara coprophila. J Mol Biol 210:531-540
19. Foulk MS, Liang C, Wu N, Blitzblau HG, Smith H, Alam D, Batra M, Gerbi SA (2006) Ecdysone induces transcription and amplification in Sciara coprophila DNA puff II/9A. Dev Biol 299:151-163
20. Foulk MS, Waggener JM, Johnson JM, Yamamoto Y, Liew GM, Urnov FD, Young Y, Lee G, Smith HS, Gerbi SA (2013) Isolation and characterization of the ecdysone receptor and the heterodimeric partner ultraspiracle through development in Sciara coprophila. Chromosoma 122:103-119
21. Gabrusewycz-Garcia N (1964) Cytological and autoradiographic studies in Sciara coprophila salivary gland chromosomes. Chromosoma 15:312-344
22. Gabrusewycz-Garcia N (1971) Studies of polytene chromosomes of sciarids. I. The salivary gland chromosomes of Sciara (Lycoriella) pauciseta (II), Felt. Chromosoma 33:421-435
23. Gabrusewycz-Garcia N, Kleinfeld RG (1966) A study of the nucleolar material in Sciara coprophila. J Cell Biol 29:347-359
24. Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li T, Boutros M, White KP (2009) Genomic mapping of binding regions for the ecdysone receptor protein complex. Genome Res 19:1006-1013
25. Gerbi SA, Liang C, Wu N, DiBartolomeis SM, Bienz-Tadmor B, Smith HS, Urnov FD (1993) DNA amplification in DNA puff II/9A of Sciara coprophila. Cold Spring Harb Symp Quant Biol 58:487-494
26. Glover DM, Zaha A, Stocker AJ, Santelli RV, Pueyo MT, deToledo SM, Lara FJS (1982) Gene amplification in Rhynchosciara salivary gland chromosomes. Proc Natl Acad Sci USA 79:2947-2951
27. Gonsalves SE, Neal SJ, Kehoe AS, Westwood JT (2011) Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster. BMC Genomics 12:475
28. Gronemeyer H, Pongs O (1980) Localization of ecdysterone on polytene chromosomes of Drosophila melanogaster. Proc Natl Acad Sci USA 77:2108-2112
29. Gronemeyer H, Hameister H, Pongs O (1981) Photoinduced bonding of endogenous ecdysterone to salivary gland chromosomes of Chironomus tentans. Chromosoma 82:543-559
30. Hackney JF, Pucci C, Naes E, Dobens L (2007) Ras signaling modulates activity of the ecdysone receptor EcR during cell migration in the Drosophila ovary. Dev Dyn 236:1213-1226
31. Hartl T, Boswell C, Orr-Weaver TL, Bosco G (2007) Developmentally regulated histone modifications in Drosophila follicle cells: initiation of gene amplification is associated with histone H3 and H4 hyperacetylation and H1 phosphorylation. Chromosoma 116:197-214
32. Kim JC, Orr-Weaver TL (2011) Analysis of a Drosophila amplicon in follicle cells highlights the diversity of metazoan replication origins. Proc Natl Acad Sci USA 108:16681-16686
33. Kim JC, Nordman J, Xie F, Kashevsky H, Eng T, Li S, MacAlpine DM, Orr-Weaver TL (2011) Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression. Genes Dev 25:1384-1398
34. Kiss I, Benczw G, Fodor A, Szabad J, Fristrom J (1976) Pupal larval mosaics in Drosophila melanogaster. Nature 262:136-138
35. Koelle MR, Talbot WS, Segraves WA, Bender MT, Cherbas P, Hogness DS (1991) The Drosophila EcR gene encodes an ecdysone receptor, a new member of the steroid receptor superfamily. Cell 67:59-77
36. Lara FJ, Stocker AJ, Amabis JM (1991) DNA sequence amplification in sciarid flies: results and perspectives. Braz J Med Biol Res 24:233-248
37. Levine M (2011) Paused RNA polymerase II as a developmental checkpoint. Cell 145:502-511
38. Liang C, Gerbi SA (1994) Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method. Mol Cell Biol 14:1520-1529
39. Liang C, Spitzer JD, Smith HS, Gerbi SA (1993) Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. Genes Dev 7:1072-1084
40. Lis JT (2007) Imaging Drosophila gene activation and polymerase pausing in vivo. Nature 450:198-202
41. Lunyak VV, Ezrokhi M, Smith HS, Gerbi SA (2002) Developmental changes in the Sciara II/9A initiation zone for DNA replication. Mol Cell Biol 22:8426-8437
42. Meijsing SH, Pufall MA, So AY, Bates DL, Chen L, Yamamoto KR (2009) DNA binding site sequence directs glucocorticoid receptor structure and activity. Science 324:407-410
43. Monesi N, Candido-Silva JA, Paçó-Larson ML, de Almeida JC (2009) Regulation of sciarid DNA puffs by ecdysone: mechanisms and perspectives. In: Smaggle G (ed) Ecdysone: structures and functions. Springer, New York, pp 165-183
44. Pelling C (1964) Ribonukleinsäure-Synthese der Riesenchromosomen Autoradiographische Untersuchungen an Chironomus tentans. Chromosoma 15:71-122
45. Poulson DF, Metz CW (1938) Studies on the structure of nucleolus-forming regions and related structures in the giant salivary gland chromosomes of Diptera. J Morphol 63:363-395
46. Rasch EM (1970a) Two-wavelength cytophotometry of Sciara salivary gland chromosomes. In: Wied GL, Bahr GF (eds) Introduction to quantitative cytochemistry, vol 2. Academic, New York, pp 335-355
47. Rasch EM (1970b) DNA cytophotometry of salivary gland nuclei and other tissue systems in dipteran larvae. In: Wied GL, Bahr GF (eds) Introduction to quantitative cytochemistry, vol 2. Academic, New York, pp 357-397
48. Robert M (1971) Einfluss von Ionenstärke und pH auf die differentielle Dekondesation der Nukleoproteide isolierter Speicheldrüsen Zellkerne und Chromosomen von Chironomus thummi. Chromosoma 36:1-33
49. Rudkin G, Corlette SL (1957) Disproportionate synthesis of DNA in a polytene chromosome region. Proc Natl Acad Sci USA 43:964-968
50. Stocker AJ, Pavan C (1974) The influence of ecdysterone on gene amplification, DNA synthesis, and puff formation in the salivary gland chromosomes of Rhynchosciara hollaenderi (Diptera, Sciaridae). Chromosoma 45:295-319
51. Stocker AJ, Yokosawa J, Soares MA, Cadavid EO (1996) DNA replication and amplification during the final cycle of polyteny in sciarid gland chromosomes and their control by ecdysone. Ciênc Cult 48:306-312
52. Stocker AJ, Amabis JM, Gorab E, Elke C, Lezzi M (1997) Antibodies against the D-domain of a Chironomus ecdysone receptor protein react with DNA puff sites in Trichosia pubescens. Chromosoma 106:456-464
53. Thomas HE, Stunnenberg HG, Stewart AF (1993) Heterodimerization of the Drosophila ecdysone receptor with retinoid X receptor and ultraspiracle. Nature 362:471-475
54. Thummel CS (1990) Puffs and gene regulation - molecular insights into the Drosophila ecdysone regulatory hierarchy. Bioessays 12:561-568
55. Urnov FD, Liang C, Blitzblau HG, Smith HS, Gerbi SA (2002) A DNAse I hypersensitive site flanks an origin of DNA replication and amplification in Sciara. Chromosoma 111:291-303
56. Wu N, Liang C, DiBartolomeis SM, Smith HS, Gerbi SA (1993) Developmental progression of DNA puffs in Sciara coprophila: amplification and transcription. Dev Biol 160:73-84
57. Xie F, Orr-Weaver TL (2008) Isolation of a Drosophila amplification origin developmentally activated by transcription. Proc Natl Acad Sci USA 105:9651-9656
58. Yao TP, Segraves WA, Oro AE, McKeown M, Evans RM (1992) Drosophila ultraspiracle modulates ecdysone receptor function via heterodimer formation. Cell 71:63-72
59. Yao TP, Forman BM, Jiang Z, Cherbas L, Chen JD, McKeown M, Cherbas P, Evans RM (1993) Functional ecdysone receptor is the product of EcR and ultraspiracle genes. Nature 366:476-479
60. Zink B, Engström Y, Gehring WJ, Paro R (1991) Direct interaction of the Polycomb protein with Antennapedia regulatory sequences in polytene chromosomes of Drosophila melanogaster. EMBO J 10:153-162