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Volumn 6, Issue 4, 2013, Pages 1176-1186

Epigenetic repression of male gametophyte-specific genes in the arabidopsis sporophyte

Author keywords

bioinformatics.; DNase I footprinting; epigenetics; gene repression; male gametophyte; transcription factors

Indexed keywords


EID: 84880711113     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sst100     Document Type: Article
Times cited : (12)

References (55)
  • 1
    • 65249100654 scopus 로고    scopus 로고
    • MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis
    • Adamczyk, B., and Fernandez, D. (2009). MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol. 149, 1713-1723.
    • (2009) Plant Physiol. , vol.149 , pp. 1713-1723
    • Adamczyk, B.1    Fernandez, D.2
  • 4
    • 0032125950 scopus 로고    scopus 로고
    • Functional architecture of a late pollen promoter: Pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements
    • Bate, N., and Twell, D. (1998). Functional architecture of a late pollen promoter: pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements. Plant Mol. Biol. 37, 859-869.
    • (1998) Plant Mol. Biol. , vol.37 , pp. 859-869
    • Bate, N.1    Twell, D.2
  • 5
    • 0142152461 scopus 로고    scopus 로고
    • Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome
    • Becker, J., Boavida, L., Carneiro, J., Haury, M., and Feijó, J. (2003). Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol. 133, 713-725.
    • (2003) Plant Physiol. , vol.133 , pp. 713-725
    • Becker, J.1    Boavida, L.2    Carneiro, J.3    Haury, M.4    Feijó, J.5
  • 6
    • 52349089796 scopus 로고    scopus 로고
    • Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
    • Bernatavichute, Y., Zhang, X., Cokus, S., Pellegrini, M., and Jacobsen, S. (2008). Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS ONE. 3, e3156.
    • (2008) PLoS ONE. , vol.3
    • Bernatavichute, Y.1    Zhang, X.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.5
  • 10
    • 79952267284 scopus 로고    scopus 로고
    • High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Boyle, A., Song, L., Lee, B.-K., London, D., Keefe, D., Birney, E., Iyer, V., Crawford, G., and Furey, T. (2011). High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells. Genome Res. 21, 456-464.
    • (2011) Genome Res. , vol.21 , pp. 456-464
    • Boyle, A.1    Song, L.2    Lee, B.-K.3    London, D.4    Keefe, D.5    Birney, E.6    Iyer, V.7    Crawford, G.8    Furey, T.9
  • 13
    • 75649129700 scopus 로고    scopus 로고
    • Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis
    • Charron, J.-B.F., He, H., Elling, A., and Deng, X. (2009). Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis. Plant Cell. 21, 3732-3748.
    • (2009) Plant Cell. , vol.21 , pp. 3732-3748
    • Charron, J.-B.F.1    He, H.2    Elling, A.3    Deng, X.4
  • 15
    • 0029257301 scopus 로고
    • Pollen specificity elements reside in 30 bp of the proximal promoters of two pollen-expressed genes
    • Eyal, Y., Curie, C., and McCormick, S. (1995). Pollen specificity elements reside in 30 bp of the proximal promoters of two pollen-expressed genes. Plant Cell. 7, 373-384.
    • (1995) Plant Cell. , vol.7 , pp. 373-384
    • Eyal, Y.1    Curie, C.2    McCormick, S.3
  • 16
    • 62549153134 scopus 로고    scopus 로고
    • Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings
    • Gao, M.-J., Lydiate, D., Li, X., Lui, H., Gjetvaj, B., Hegedus, D., and Rozwadowski, K. (2009). Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell. 21, 54-71.
    • (2009) Plant Cell. , vol.21 , pp. 54-71
    • Gao, M.-J.1    Lydiate, D.2    Li, X.3    Lui, H.4    Gjetvaj, B.5    Hegedus, D.6    Rozwadowski, K.7
  • 17
    • 78649811780 scopus 로고    scopus 로고
    • SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis
    • Guo, L., Yu, Y., Law, J., and Zhang, X. (2010). SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis. Proc. Natl Acad. Sci. U S A. 107, 18557-18562.
    • (2010) Proc. Natl Acad. Sci. U S A. , vol.107 , pp. 18557-18562
    • Guo, L.1    Yu, Y.2    Law, J.3    Zhang, X.4
  • 18
    • 33746592051 scopus 로고    scopus 로고
    • Transcriptional repression distinguishes somatic from germ cell lineages in a plant
    • Haerizadeh, F., Singh, M., and Bhalla, P. (2006). Transcriptional repression distinguishes somatic from germ cell lineages in a plant. Science. 313, 496-499.
    • (2006) Science. , vol.313 , pp. 496-499
    • Haerizadeh, F.1    Singh, M.2    Bhalla, P.3
  • 19
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • Hartley, P., and Madhani, H. (2009). Mechanisms that specify promoter nucleosome location and identity. Cell. 137, 445-458.
    • (2009) Cell. , vol.137 , pp. 445-458
    • Hartley, P.1    Madhani, H.2
  • 20
    • 17844410215 scopus 로고    scopus 로고
    • Transcriptome analysis of haploid male gametophyte development in Arabidopsis
    • Honys, D., and Twell, D. (2004). Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol. 5, R85.
    • (2004) Genome Biol. , vol.5
    • Honys, D.1    Twell, D.2
  • 21
    • 0029310620 scopus 로고
    • The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein
    • Huang, H., Tudor, M., Weiss, C., Hu, Y., and Ma, H. (1995). The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28, 549-567.
    • (1995) Plant Mol. Biol. , vol.28 , pp. 549-567
    • Huang, H.1    Tudor, M.2    Weiss, C.3    Hu, Y.4    Ma, H.5
  • 23
    • 84859226446 scopus 로고    scopus 로고
    • EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development
    • Kim, S., Lee, J., Eshed-Williams, L., Zilberman, D., and Sung, Z. (2012). EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genet. 8, e1002512.
    • (2012) PLoS Genet. , vol.8
    • Kim, S.1    Lee, J.2    Eshed-Williams, L.3    Zilberman, D.4    Sung, Z.5
  • 24
    • 0037627930 scopus 로고    scopus 로고
    • Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes
    • Kotake, T., Takada, S., Nakahigashi, K., Ohto, M., and Goto, K. (2003). Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes. Plant Cell Physiol. 44, 555-564.
    • (2003) Plant Cell Physiol. , vol.44 , pp. 555-564
    • Kotake, T.1    Takada, S.2    Nakahigashi, K.3    Ohto, M.4    Goto, K.5
  • 25
    • 79955586204 scopus 로고    scopus 로고
    • Dynamic regulation of H3K27 trimeth-ylation during Arabidopsis differentiation
    • Lafos, M., Kroll, P., Hohenstatt, M., Thorpe, F., Clarenz, O., and Schubert, D. (2011). Dynamic regulation of H3K27 trimeth-ylation during Arabidopsis differentiation. PLoS Genet. 7, e1002040.
    • (2011) PLoS Genet. , vol.7
    • Lafos, M.1    Kroll, P.2    Hohenstatt, M.3    Thorpe, F.4    Clarenz, O.5    Schubert, D.6
  • 26
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J., and Jacobsen, S. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11, 204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.1    Jacobsen, S.2
  • 27
    • 57649111510 scopus 로고    scopus 로고
    • Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomor-phogenesis in darkness
    • Leivar, P., Monte, E., Oka, Y., Liu, T., Carle, C., Castillon, A., Huq, E., and Quail, P. (2008). Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomor-phogenesis in darkness. Curr. Biol. 18, 1815-1823.
    • (2008) Curr. Biol. , vol.18 , pp. 1815-1823
    • Leivar, P.1    Monte, E.2    Oka, Y.3    Liu, T.4    Carle, C.5    Castillon, A.6    Huq, E.7    Quail, P.8
  • 28
    • 84878469999 scopus 로고    scopus 로고
    • High-throughput sequencing of Arabidopsis thaliana pollen cDNA uncovers novel transcription and alternative splicing
    • (Epub 2013 April 16)
    • Loraine, A., McCormick, S., Estrada, A., Patel, K., and Qin, P. (2013). High-throughput sequencing of Arabidopsis thaliana pollen cDNA uncovers novel transcription and alternative splicing. Plant Physiol., Http://dx.doi.org/10. 1104/pp.112.211441 (Epub 2013 April 16).
    • (2013) Plant Physiol
    • Loraine, A.1    McCormick, S.2    Estrada, A.3    Patel, K.4    Qin, P.5
  • 29
    • 84871967979 scopus 로고    scopus 로고
    • Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production
    • Luo, C., Sidote, D., Zhang, Y., Kerstetter, R., Michael, T., and Lam, E. (2013). Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. Plant J. 73, 77-90.
    • (2013) Plant J. , vol.73 , pp. 77-90
    • Luo, C.1    Sidote, D.2    Zhang, Y.3    Kerstetter, R.4    Michael, T.5    Lam, E.6
  • 30
    • 0027130084 scopus 로고
    • Male gametophyte development
    • McCormick, S. (1993). Male gametophyte development. Plant Cell. 5, 1265-1275.
    • (1993) Plant Cell. , vol.5 , pp. 1265-1275
    • McCormick, S.1
  • 33
    • 70149108590 scopus 로고    scopus 로고
    • Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil
    • Qin, Y., Leydon, A., Manziello, A., Pandey, R., Mount, D., Denic, S., Vasic, B., Johnson, M., and Palanivelu, R. (2009). Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. PLoS Genet. 5, e1000621.
    • (2009) PLoS Genet. , vol.5
    • Qin, Y.1    Leydon, A.2    Manziello, A.3    Pandey, R.4    Mount, D.5    Denic, S.6    Vasic, B.7    Johnson, M.8    Palanivelu, R.9
  • 34
    • 0030820673 scopus 로고    scopus 로고
    • Determination of floral organ identity by Arabidopsis MADS domain homeotic proteins AP1, AP3, PI, and AG is independent of their DNA-binding specificity
    • Riechmann, J., and Meyerowitz, E. (1997). Determination of floral organ identity by Arabidopsis MADS domain homeotic proteins AP1, AP3, PI, and AG is independent of their DNA-binding specificity. Mol. Biol. Cell. 8, 1243-1259.
    • (1997) Mol. Biol. Cell. , vol.8 , pp. 1243-1259
    • Riechmann, J.1    Meyerowitz, E.2
  • 35
    • 0034983533 scopus 로고    scopus 로고
    • Functional analysis of cis-regulatory elements within the promoter of the tobacco late pollen gene g10
    • Rogers, H., Bate, N., Combe, J., Sullivan, J., Sweetman, J., Swan, C., Lonsdale, D., and Twell, D. (2001). Functional analysis of cis-regulatory elements within the promoter of the tobacco late pollen gene g10. Plant Mol. Biol. 45, 577-585.
    • (2001) Plant Mol. Biol. , vol.45 , pp. 577-585
    • Rogers, H.1    Bate, N.2    Combe, J.3    Sullivan, J.4    Sweetman, J.5    Swan, C.6    Lonsdale, D.7    Twell, D.8
  • 39
    • 59349118366 scopus 로고    scopus 로고
    • Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
    • Slotkin, R., Vaughn, M., Borges, F., Tanurdzić, M., Becker, J., Feijó, J., and Martienssen, R. (2009). Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell. 136, 461-472.
    • (2009) Cell. , vol.136 , pp. 461-472
    • Slotkin, R.1    Vaughn, M.2    Borges, F.3    Tanurdzić, M.4    Becker, J.5    Feijó, J.6    Martienssen, R.7
  • 40
    • 84862812393 scopus 로고    scopus 로고
    • Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis
    • Tao, Z., Shen, L., Liu, C., Liu, L., Yan, Y., and Yu, H. (2012). Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis. Plant J. 70, 549-561.
    • (2012) Plant J. , vol.70 , pp. 549-561
    • Tao, Z.1    Shen, L.2    Liu, C.3    Liu, L.4    Yan, Y.5    Yu, H.6
  • 42
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • Tirosh, I., and Barkai, N. (2008). Two strategies for gene regulation by promoter nucleosomes. Genome Res. 18, 1084-1091.
    • (2008) Genome Res. , vol.18 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2
  • 44
    • 78049400268 scopus 로고    scopus 로고
    • Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
    • van Dijk, K., Ding, Y., Malkaram, S., Riethoven, J.-J.M., Liu, R., Yang, J., Laczko, P., Chen, H., Xia, Y., Ladunga, I., et al. (2010). Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana. BMC Plant Biol. 10, 238.
    • (2010) BMC Plant Biol. , vol.10 , pp. 238
    • Van Dijk, K.1    Ding, Y.2    Malkaram, S.3    Riethoven, J.-J.M.4    Liu, R.5    Yang, J.6    Laczko, P.7    Chen, H.8    Xia, Y.9    Ladunga, I.10
  • 45
    • 33846396216 scopus 로고    scopus 로고
    • MIKC* MADSprotein complexes bind motifs enriched in the proximal region of late pollen-specific Arabidopsis promoters
    • Verelst, W., Saedler, H., and Münster, T. (2007). MIKC* MADSprotein complexes bind motifs enriched in the proximal region of late pollen-specific Arabidopsis promoters. Plant Physiol. 143, 447-460.
    • (2007) Plant Physiol. , vol.143 , pp. 447-460
    • Verelst, W.1    Saedler, H.2    Münster, T.3
  • 46
    • 33745647013 scopus 로고    scopus 로고
    • Overrepresentation of elements recognized by TCP-domain transcription factors in the upstream regions of nuclear genes encoding components of the mitochondrial oxidative phosphorylation machinery
    • Welchen, E., and Gonzalez, D. (2006). Overrepresentation of elements recognized by TCP-domain transcription factors in the upstream regions of nuclear genes encoding components of the mitochondrial oxidative phosphorylation machinery. Plant Physiol. 141, 540-545.
    • (2006) Plant Physiol. , vol.141 , pp. 540-545
    • Welchen, E.1    Gonzalez, D.2
  • 48
    • 84865331447 scopus 로고    scopus 로고
    • Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis
    • Zhang, W., Zhang, T., Wu, Y., and Jiang, J. (2012b). Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis. Plant Cell. 24, 2719-2731.
    • (2012) Plant Cell. , vol.24 , pp. 2719-2731
    • Zhang, W.1    Zhang, T.2    Wu, Y.3    Jiang, J.4
  • 49
    • 67650091251 scopus 로고    scopus 로고
    • Genome-wide analysis of mono-, di-and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
    • Zhang, X., Bernatavichute, Y., Cokus, S., Pellegrini, M., and Jacobsen, S. (2009). Genome-wide analysis of mono-, di-and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 10, R62.
    • (2009) Genome Biol. , vol.10
    • Zhang, X.1    Bernatavichute, Y.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.5
  • 52
    • 37849021893 scopus 로고    scopus 로고
    • SAD2, an importin-like protein, is required for UV-B response in Arabidopsis by mediating MYB4 nuclear trafficking
    • Zhao, J., Zhang, W., Zhao, Y., Gong, X., Guo, L., Zhu, G., Wang, X., Gong, Z., Schumaker, K., and Guo, Y. (2007). SAD2, an importin-like protein, is required for UV-B response in Arabidopsis by mediating MYB4 nuclear trafficking. Plant Cell. 19, 3805-3818.
    • (2007) Plant Cell. , vol.19 , pp. 3805-3818
    • Zhao, J.1    Zhang, W.2    Zhao, Y.3    Gong, X.4    Guo, L.5    Zhu, G.6    Wang, X.7    Gong, Z.8    Schumaker, K.9    Guo, Y.10
  • 53
    • 77954460369 scopus 로고    scopus 로고
    • Genome-wide profiling of histone H3 lysine 9 acety-lation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression
    • Zhou, J., Wang, X., He, K., Charron, J.-B.F., Elling, A., and Deng, X. (2010). Genome-wide profiling of histone H3 lysine 9 acety-lation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol. Biol. 72, 585-595.
    • (2010) Plant Mol. Biol. , vol.72 , pp. 585-595
    • Zhou, J.1    Wang, X.2    He, K.3    Charron, J.-B.F.4    Elling, A.5    Deng, X.6
  • 54
    • 55549141877 scopus 로고    scopus 로고
    • Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
    • Zilberman, D., Coleman-Derr, D., Ballinger, T., and Henikoff, S. (2008). Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456, 125-129.
    • (2008) Nature. , vol.456 , pp. 125-129
    • Zilberman, D.1    Coleman-Derr, D.2    Ballinger, T.3    Henikoff, S.4
  • 55
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methyla-tion and transcription
    • Zilberman, D., Gehring, M., Tran, R., Ballinger, T., and Henikoff, S. (2007). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methyla-tion and transcription. Nat. Genet. 39, 61-69.
    • (2007) Nat. Genet. , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.3    Ballinger, T.4    Henikoff, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.