Light Sheet Tomography (LST) for in situ imaging of plant roots

Optics Express

Volumn 21, Issue 14, 2013, Pages 16239-16247

  Yang, Zhengyi ^a   Downie, Helen ^b,c   Rozbicki, Emil ^a   Dupuy, Lionel X ^b   MacDonald, Michael P ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^c UNIVERSITY OF ABERTAY DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COST EFFECTIVENESS; FOOD SUPPLY; NUTRIENTS; REFRACTIVE INDEX; TOMOGRAPHY;

GLOBAL FOOD SECURITY; GROWTH SUBSTRATES; IMAGING METHOD; LONG TERM MONITORING; MICROENVIRONMENTS; ROOT DEVELOPMENT; ROOT STRUCTURE; TRANSPARENT SOILS;

SOILS;

AGRICULTURE; ANATOMY AND HISTOLOGY; DEVICE FAILURE ANALYSIS; DEVICES; EQUIPMENT DESIGN; LETTUCE; OPTICAL TOMOGRAPHY; PHOTOMETRY; PLANT ROOT; REFRACTOMETRY; REMOTE SENSING; ARTICLE; EQUIPMENT; EQUIPMENT FAILURE; HISTOLOGY;

AGRICULTURE; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; LETTUCE; NEPHELOMETRY AND TURBIDIMETRY; PLANT ROOTS; REFRACTOMETRY; REMOTE SENSING TECHNOLOGY; TOMOGRAPHY, OPTICAL;

EID: 84880525794     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.21.016239     Document Type: Article

References (15)

1. J. Lynch, "Root Architecture and Plant Productivity," Plant Physiol. 109(1), 7-13 (1995).
2. I. De Smet, P. J. White, A. G. Bengough, L. Dupuy, B. Parizot, I. Casimiro, R. Heidstra, M. Laskowski, M. Lepetit, F. Hochholdinger, X. Draye, H. Zhang, M. R. Broadley, B. Péret, J. P. Hammond, H. Fukaki, S. Mooney, J. P. Lynch, P. Nacry, U. Schurr, L. Laplaze, P. Benfey, T. Beeckman, and M. Bennett, "Analyzing lateral root development: how to move forward," Plant Cell 24(1), 15-20 (2012).
3. R. Tomer, K. Khairy, and P. J. Keller, "Light sheet microscopy in cell biology," in Cell Imaging Techniques (Humana Press 2013), 123-137.
4. H. Downie, N. Holden, W. Otten, A. J. Spiers, T. A. Valentine, and L. X. Dupuy, "Transparent soil for imaging the rhizosphere," PLoS ONE 7(9), e44276 (2012).
5. G. Häusler and W. Heckel, "Light sectioning with large depth and high resolution," Appl. Opt. 27(24), 5165-5169 (1988).
6. J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E. H. K. Stelzer, "Optical sectioning deep inside live embryos by selective plane illumination microscopy," Science 305(5686), 1007-1009 (2004).
7. E. G. Reynaud, U. Krzic, K. Greger, and E. H. K. Stelzer, "Light sheet-based fluorescence microscopy: more dimensions, more photons, and less photodamage," HFSP J 2(5), 266-275 (2008).
8. M. Minsky, "Microscopy Apparatus," U.S. patent 3013467 (1961).
9. D. M. Shotton, "Confocal scanning optical microscopy and its applications for biological specimens," J. Cell Sci. 94, 175-206 (1989).
10. W. J. Alford, R. D. VanderNeut, and V. J. Zaleckas, "Laser scanning microscopy," Proc. IEEE 70(6), 641-651 (1982).
11. G. Gbur and E. Wolf, "The Rayleigh range of Gaussian Schell-model beams," J. Mod. Opt. 48, 1735-1741 (2001).
12. S. Declerck, D. G. Strullu, and C. Plenchette, "Monoxenic culture of the intraradical forms of SP isolated from a tropical ecosystem: A proposed methodology for germplasm collection," Mycologia 90(4), 579-585 (1998).
13. L. Dolan, K. Janmaat, V. Willemsen, P. Linstead, S. Poethig, K. Roberts, and B. Scheres, "Cellular organisation of the Arabidopsis thaliana root," Development 119(1), 71-84 (1993).
14. D. B. Dresbøll, K. Thorup-Kristensen, B. M. McKenzie, L. X. Dupuy, and A. G. Bengough, "Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging," Plant Soil, 1-11 (2013).
15. F. Fiorani, U. Rascher, S. Jahnke, and U. Schurr, "Imaging plants dynamics in heterogenic environments," Curr. Opin. Biotechnol. 23(2), 227-235 (2012).