메뉴 건너뛰기




Volumn 87, Issue 13, 2013, Pages 7265-7281

Molecular evolution of the HIV-1 thai epidemic between the time of RV144 immunogen selection to the execution of the vaccine efficacy trial

(21)  Kijak, Gustavo H a,b   Tovanabutra, Sodsai a,b   Rerks Ngarm, Supachai c   Nitayaphan, Sorachai d   Eamsila, Chirapa d   Kunasol, Prayura c   Khamboonruang, Chirasak c   Thongcharoen, Prasert c   Namwat, Chawetsan c   Premsri, Nakorn c   Benenson, Michael d   Morgan, Patricia d   Bose, Meera a,b   Sanders Buell, Eric a,b   Paris, Robert d   Robb, Merlin L a,b   Birx, Deborah L b,e   De Souza, Mark S a,d   McCutchan, Francine E a,b,f   Michael, Nelson L b   more..


Author keywords

[No Author keywords available]

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS VACCINE; PLACEBO; VIRUS ENVELOPE PROTEIN;

EID: 84880357204     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.03070-12     Document Type: Article
Times cited : (19)

References (85)
  • 1
    • 27944496493 scopus 로고    scopus 로고
    • HIV diversity, molecular epidemiology, and the role of recombination
    • Kijak GH, McCutchan FE. 2005. HIV diversity, molecular epidemiology, and the role of recombination. Curr. Infect. Dis. Rep. 7:480-488.
    • (2005) Curr. Infect. Dis. Rep. , vol.7 , pp. 480-488
    • Kijak, G.H.1    McCutchan, F.E.2
  • 2
    • 78650235515 scopus 로고    scopus 로고
    • Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
    • Tebit DM, Arts EJ. 2011. Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease. Lancet Infect. Dis. 11:45-56.
    • (2011) Lancet Infect. Dis. , vol.11 , pp. 45-56
    • Tebit, D.M.1    Arts, E.J.2
  • 5
    • 18144409895 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV in Asia and the Pacific
    • In Lu Y, Essex M (ed), AIDS in Asia. Kluwer Academic, New York, NY
    • Tovanabutra S, Birx D, McCutchan F. 2004. Molecular epidemiology of HIV in Asia and the Pacific. In Lu Y, Essex M (ed), AIDS in Asia. Kluwer Academic, New York, NY.
    • (2004)
    • Tovanabutra, S.1    Birx, D.2    McCutchan, F.3
  • 12
    • 0028131337 scopus 로고
    • The molecular epidemiology of HIV in Asia
    • Weniger BG, Takebe Y, Ou CY, Yamazaki S. 1994. The molecular epidemiology of HIV in Asia. AIDS 8(Suppl 2):S13-S28.
    • (1994) AIDS , vol.8 , Issue.SUPP. 2
    • Weniger, B.G.1    Takebe, Y.2    Ou, C.Y.3    Yamazaki, S.4
  • 24
    • 0034628639 scopus 로고    scopus 로고
    • Highly variable sequences in the env V3 region of HIV type 1 distributing among Thai carriers from 1995 to 1997
    • Auwanit W, Ayuthaya PI, Duangchanda S, Mukai T, Kurata T, Ikuta K. 2000. Highly variable sequences in the env V3 region of HIV type 1 distributing among Thai carriers from 1995 to 1997. AIDS Res. Hum. Retroviruses 16:283-289.
    • (2000) AIDS Res. Hum. Retroviruses , vol.16 , pp. 283-289
    • Auwanit, W.1    Ayuthaya, P.I.2    Duangchanda, S.3    Mukai, T.4    Kurata, T.5    Ikuta, K.6
  • 34
    • 0142093569 scopus 로고    scopus 로고
    • High prevalence of diverse forms of HIV-1 intersubtype recombinants in central Myanmar: geographical hot spot of extensive recombination
    • Takebe Y, Motomura K, Tatsumi M, Lwin HH, Zaw M, Kusagawa S. 2003. High prevalence of diverse forms of HIV-1 intersubtype recombinants in central Myanmar: geographical hot spot of extensive recombination. AIDS 17:2077-2087.
    • (2003) AIDS , vol.17 , pp. 2077-2087
    • Takebe, Y.1    Motomura, K.2    Tatsumi, M.3    Lwin, H.H.4    Zaw, M.5    Kusagawa, S.6
  • 36
    • 0034468391 scopus 로고    scopus 로고
    • A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant
    • Piyasirisilp S, McCutchan FE, Carr JK, Sanders-Buell E, Liu W, Chen J, Wagner R, Wolf H, Shao Y, Lai S, Beyrer C, Yu X.F. 2000. A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant. J. Virol. 74:11286-11295.
    • (2000) J. Virol. , vol.74 , pp. 11286-11295
    • Piyasirisilp, S.1    McCutchan, F.E.2    Carr, J.K.3    Sanders-Buell, E.4    Liu, W.5    Chen, J.6    Wagner, R.7    Wolf, H.8    Shao, Y.9    Lai, S.10    Beyrer, C.11    Yu, X.F.12
  • 37
    • 34047223482 scopus 로고    scopus 로고
    • Surveillance of genotypic resistance mutations in chronic HIV-1 treated individuals after completion of the National Access to Antiretroviral Program in Thailand
    • Sukasem C, Churdboonchart V, Chasombat S, Kohreanudom S, Watitpun C, Pasomsub E, Piroj W, Tiensuwan M, Chantratita W. 2007. Surveillance of genotypic resistance mutations in chronic HIV-1 treated individuals after completion of the National Access to Antiretroviral Program in Thailand. Infection 35:81-88.
    • (2007) Infection , vol.35 , pp. 81-88
    • Sukasem, C.1    Churdboonchart, V.2    Chasombat, S.3    Kohreanudom, S.4    Watitpun, C.5    Pasomsub, E.6    Piroj, W.7    Tiensuwan, M.8    Chantratita, W.9
  • 41
    • 79956195707 scopus 로고    scopus 로고
    • Ministry of Public Health-Thai AIDS Vaccine Evaluation Group
    • Screening and evaluation of potential volunteers for a phase III trial in Thailand of a candidate preventive HIV vaccine (RV148)
    • Ministry of Public Health-Thai AIDS Vaccine Evaluation Group. 2011. Screening and evaluation of potential volunteers for a phase III trial in Thailand of a candidate preventive HIV vaccine (RV148). Vaccine 29: 4285-4292.
    • (2011) Vaccine , vol.29 , pp. 4285-4292
  • 43
    • 0003461851 scopus 로고    scopus 로고
    • National guidelines for clinical management of HIV/AIDS in adults and children
    • Ministry of Public Health of Thailand. Ministry of Public Health, Bangkok, Thailand
    • Ministry of Public Health of Thailand. 2000. National guidelines for clinical management of HIV/AIDS in adults and children. Ministry of Public Health, Bangkok, Thailand.
    • (2000)
  • 45
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.1
  • 46
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 47
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 48
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 50
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: hypothesis testing using phylogenies
    • Pond SL, Frost SD, Muse S.V. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.1    Frost, S.D.2    Muse, S.V.3
  • 51
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • In Bryson V, VogelH(ed), Academic Press, New York, NY
    • Zuckerkandl E, Pauling L. 1965. Evolutionary divergence and convergence in proteins, p 97-166. In Bryson V, VogelH(ed), Evolving genes and proteins. Academic Press, New York, N.Y.
    • (1965) Evolving genes and proteins. , pp. 97-166
    • Zuckerkandl, E.1    Pauling, L.2
  • 52
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton J.M. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 53
    • 0018784105 scopus 로고
    • Protein and nucleic acid sequence data and phylogeny
    • Schwartz RM, Dayhoff M.O. 1979. Protein and nucleic acid sequence data and phylogeny. Science 205:1038-1039.
    • (1979) Science , vol.205 , pp. 1038-1039
    • Schwartz, R.M.1    Dayhoff, M.O.2
  • 58
    • 0032501951 scopus 로고    scopus 로고
    • Cloning and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China
    • Graf M, Shao Y, Zhao Q, Seidl T, Kostler J, Wolf H, Wagner R. 1998. Cloning and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China. AIDS Res. Hum. Retroviruses 14:285-288.
    • (1998) AIDS Res. Hum. Retroviruses , vol.14 , pp. 285-288
    • Graf, M.1    Shao, Y.2    Zhao, Q.3    Seidl, T.4    Kostler, J.5    Wolf, H.6    Wagner, R.7
  • 67
    • 33746192136 scopus 로고    scopus 로고
    • HIV/AIDS preventive vaccine 'prime-boost' phase III trial: foundations and initial lessons learned from Thailand
    • Rerks-Ngarm S, Brown AE, Khamboonruang C, Thongcharoen P, Kunasol P. 2006. HIV/AIDS preventive vaccine 'prime-boost' phase III trial: foundations and initial lessons learned from Thailand. AIDS 20:1471-1479.
    • (2006) AIDS , vol.20 , pp. 1471-1479
    • Rerks-Ngarm, S.1    Brown, A.E.2    Khamboonruang, C.3    Thongcharoen, P.4    Kunasol, P.5
  • 70
    • 79960405099 scopus 로고    scopus 로고
    • Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies
    • van Gils MJ, Bunnik EM, Boeser-Nunnink BD, Burger JA, Terlouw-Klein M, Verwer N, Schuitemaker H. 2011. Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies. J. Virol. 85:6986-6995.
    • (2011) J. Virol. , vol.85 , pp. 6986-6995
    • van Gils, M.J.1    Bunnik, E.M.2    Boeser-Nunnink, B.D.3    Burger, J.A.4    Terlouw-Klein, M.5    Verwer, N.6    Schuitemaker, H.7
  • 71
    • 79952602584 scopus 로고    scopus 로고
    • The V1V2 domain and an N-linked glycosylation site in the V3 loop of the HIV-1 envelope glycoprotein modulate neutralization sensitivity to the human broadly neutralizing antibody 2G12
    • Chaillon A, Braibant M, Moreau T, Thenin S, Moreau A, Autran B, Barin F. 2011. The V1V2 domain and an N-linked glycosylation site in the V3 loop of the HIV-1 envelope glycoprotein modulate neutralization sensitivity to the human broadly neutralizing antibody 2G12. J. Virol. 85: 3642-3648.
    • (2011) J. Virol. , vol.85 , pp. 3642-3648
    • Chaillon, A.1    Braibant, M.2    Moreau, T.3    Thenin, S.4    Moreau, A.5    Autran, B.6    Barin, F.7
  • 72
    • 21644446614 scopus 로고    scopus 로고
    • The V1, V2, and V3 regions of the human immunodeficiency virus type 1 envelope differentially affect the viral phenotype in an isolate-dependent manner
    • Saunders CJ, McCaffrey RA, Zharkikh I, Kraft Z, Malenbaum SE, Burke B, Cheng-Mayer C, Stamatatos L. 2005. The V1, V2, and V3 regions of the human immunodeficiency virus type 1 envelope differentially affect the viral phenotype in an isolate-dependent manner. J. Virol. 79:9069-9080.
    • (2005) J. Virol. , vol.79 , pp. 9069-9080
    • Saunders, C.J.1    McCaffrey, R.A.2    Zharkikh, I.3    Kraft, Z.4    Malenbaum, S.E.5    Burke, B.6    Cheng-Mayer, C.7    Stamatatos, L.8
  • 75
    • 0041506995 scopus 로고    scopus 로고
    • Full-length sequence analysis of HIV-1 isolate CM237: a CRF01_AE/B intersubtype recombinant from Thailand
    • Swanson P, Devare SG, Hackett J, Jr. 2003. Full-length sequence analysis of HIV-1 isolate CM237: a CRF01_AE/B intersubtype recombinant from Thailand. AIDS Res. Hum. Retroviruses 19:707-712.
    • (2003) AIDS Res. Hum. Retroviruses , vol.19 , pp. 707-712
    • Swanson, P.1    Devare, S.G.2    Hackett, J.Jr.3
  • 80
    • 35448977189 scopus 로고    scopus 로고
    • The distribution of HIV-1 recombination breakpoints
    • Fan J, Negroni M, Robertson D.L. 2007. The distribution of HIV-1 recombination breakpoints. Infect. Genet. Evol. 7:717-723.
    • (2007) Infect. Genet. Evol. , vol.7 , pp. 717-723
    • Fan, J.1    Negroni, M.2    Robertson, D.L.3
  • 81
    • 0003928134 scopus 로고    scopus 로고
    • HIV and the pathogenesis of AIDS
    • 3rd ed. ASM Press, Washington, DC
    • Levy J.A. 2007. HIV and the pathogenesis of AIDS, 3rd ed. ASM Press, Washington, D.C.
    • (2007)
    • Levy, J.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.