Ancestry analysis reveals a predominant Native American component with moderate European admixture in Bolivians

Forensic Science International: Genetics

Volumn 7, Issue 5, 2013, Pages 537-542

  Heinz, Tanja ^a   Álvarez Iglesias, Vanesa ^a   Pardo Seco, Jacobo ^a   Taboada Echalar, Patricia ^a   Gómez Carballa, Alberto ^a   Torres Balanza, Antonio ^b   Rocabado, Omar ^b   Carracedo, Ángel ^a   Vullo, Carlos ^c,d   Salas, Antonio ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b Instituto de Investigaciones Forenses   (Bolivia)

^c Equipo de Argentina de Antropología Forense ^*  (Argentina)

^d UNIVERSIDAD NACIONAL DE CÓRDOBA   (Argentina)

Author keywords

AIMs; Ancestry; Bolivia; Indels; SNPs

Indexed keywords

AMERICAN INDIAN; ARTICLE; BOLIVIA; BOLIVIAN; ETHNIC GROUP; ETHNICITY; EUROPEAN AMERICAN; GENETIC ANALYSIS; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SIMULATION;

AIMS; ANCESTRY; BOLIVIA; INDELS; SNPS;

AFRICAN CONTINENTAL ANCESTRY GROUP; BOLIVIA; COMPUTER SIMULATION; DNA FINGERPRINTING; ETHNIC GROUPS; EUROPEAN CONTINENTAL ANCESTRY GROUP; FORENSIC GENETICS; GENETICS, POPULATION; HUMANS; INDIANS, SOUTH AMERICAN; PRINCIPAL COMPONENT ANALYSIS;

EID: 84880307961     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2013.05.012     Document Type: Article

References (31)

1. M.C. Bobillo, B. Zimmermann, A. Sala, G. Huber, A. Rock, H.-J. Bandelt, D. Corach, and W. Parson Amerindian mitochondrial DNA haplogroups predominate in the population of Argentina: towards a first nationwide forensic mitochondrial DNA sequence database Int. J. Legal Med. 74 1 2010 65 76
2. M. Bodner, U.A. Perego, G. Huber, L. Fendt, A.W. Röck, B. Zimmermann, A. Olivieri, A. Gómez-Carballa, H. Lancioni, and N. Angerhofer Rapid coastal spread of First Americans: novel insights from South America's Southern Cone mitochondrial genomes Genome Res. 22 5 2012 811 820
3. M.L. Catelli, V. Álvarez-Iglesias, A. Gómez-Carballa, A. Mosquera-Miguel, C. Romanini, A. Borosky, J. Amigo, Á. Carracedo, C. Vullo, and A. Salas The impact of modern migrations on present-day multi-ethnic Argentina as recorded on the mitochondrial DNA genome BMC Genet. 12 2011 77
4. U.A. Perego, A. Achilli, N. Angerhofer, M. Accetturo, M. Pala, A. Olivieri, B.H. Kashani, K.H. Ritchie, R. Scozzari, and Q.-P. Kong Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups Curr. Biol. 19 1 2009 1 8
5. U.A. Perego, N. Angerhofer, M. Pala, A. Olivieri, H. Lancioni, B.H. Kashani, V. Carossa, J.E. Ekins, A. Gomez-Carballa, and G. Huber The initial peopling of the Americas: a growing number of founding mitochondrial genomes from Beringia Genome Res. 20 9 2010 1174 1179
6. A. Salas, A. Acosta, V. Álvarez-Iglesias, M. Cerezo, C. Phillips, M.V. Lareu, and Á. Carracedo The mtDNA ancestry of admixed Colombian populations Am. J. Hum. Biol. 20 2008 584 591
7. A. Salas, J.C. Jaime, V. Álvarez-Iglesias, and Á. Carracedo Gender bias in the multi-ethnic genetic composition of Central Argentina J. Hum. Genet. 53 2008 662 674
8. D. Reich, N. Patterson, D. Campbell, A. Tandon, S. Mazieres, N. Ray, M.V. Parra, W. Rojas, C. Duque, and N. Mesa Reconstructing Native American population history Nature 488 7411 2012 370 374
9. H. Afonso-Costa, M. Carvalho, V. Lopes, F. Balsa, A.M. Bento, A. Serra, L. Andrade, M.J. Anjos, M.C. Vide, and S. Pantoja Mitochondrial DNA sequence analysis of a native Bolivian population J. Forensic Leg. Med. 17 5 2010 247 253
10. F. Bert, A. Corella, M. Gene, A. Perez-Perez, and D. Turbon Mitochondrial DNA diversity in the Llanos de Moxos: Moxo, Movima and Yuracare Amerindian populations from Bolivia lowlands Ann. Hum. Biol. 31 1 2004 9 28 (Pubitemid 38131687)
11. A. Corella, F. Bert, A. Perez-Perez, M. Gene, and D. Turbon Mitochondrial DNA diversity of the Amerindian populations living in the Andean Piedmont of Bolivia: Chimane, Moseten, Aymara and Quechua Ann. Hum. Biol. 34 1 2007 34 55
12. C.L. Dornelles, J. Battilana, N.J. Fagundes, L.B. Freitas, S.L. Bonatto, and F.M. Salzano Mitochondrial DNA and Alu insertions in a genetically peculiar population: the Ayoreo Indians of Bolivia and Paraguay Am. J. Hum. Biol. 16 4 2004 479 488 (Pubitemid 39004162)
13. M. Gayá-Vidal, P. Moral, N. Saenz-Ruales, P. Gerbault, L. Tonasso, M. Villena, R. Vasquez, C.M. Bravi, and J.M. Dugoujon mtDNA and Y-chromosome diversity in Aymaras and Quechuas from Bolivia: different stories and special genetic traits of the Andean Altiplano populations Am. J. Phys. Anthropol. 145 2 2011 215 230
14. J.M. Galanter, J.C. Fernández-López, C.R. Gignoux, J. Barnholtz-Sloan, C. Fernandez-Rozadilla, M. Via, A. Hidalgo-Miranda, A.V. Contreras, L.U. Figueroa, and P. Raska Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas PLoS Genet. 8 3 2012 e1002554
15. W.S. Watkins, J. Xing, C. Huff, D.J. Witherspoon, Y. Zhang, U.A. Perego, S.R. Woodward, and L.B. Jorde Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World BMC Genet. 13 2012 39
16. F.S. Manta, R. Pereira, A. Caiafa, D.A. Silva, L. Gusmão, and E.F. Carvalho Analysis of genetic ancestry in the admixed Brazilian population from Rio de Janeiro using 46 autosomal ancestry-informative indel markers Ann. Hum. Biol. 40 1 2013 94 98
17. S.D. Pena, L. Bastos-Rodrigues, J.R. Pimenta, and S.P. Bydlowski DNA tests probe the genomic ancestry of Brazilians Braz. J. Med. Biol. Res. 42 10 2009 870 876
18. R.V. Santos, P.H. Fry, S. Monteiro, M.C. Maio, J.C. Rodrigues, L. Bastos-Rodrigues, and S.D. Pena Color, race, and genomic ancestry in Brazil: dialogues between anthropology and genetics Curr. Anthropol. 50 6 2009 787 819
19. V.N. Silbiger, M.H. Hirata, A.D. Luchessi, F.D.V. Genvigir, A. Cerda, A.C. Rodrigues, M.A.V. Willrich, S.S. Arazi, E.L. Dorea, and M.M.S. Bernik Differentiation of African components of ancestry to stratify groups in a case-control study of a Brazilian urban population Genet. Test Mol. Biomark. 16 6 2011 524 530
20. H.M. Cann, C. Toma, d. Cazes, L. Legrand, M.-F. Morel, V. Piouffre, L. Bodmer, J. Bodmer, W.F. Bonne-Tamir, and B.A. Cambon-Thomsen A human genome diversity cell line panel Science 296 5566 2002 261 262 (Pubitemid 34303653)
21. R. Pereira, C. Phillips, N. Pinto, C. Santos, S.E.B. Santos, d. Amorim, A. Carracedo, and Á.L. Gusmão Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing PLoS ONE 7 1 2012 e29684
22. Team TRC TheR.C.T. R: A Language and Environment for Statistical Computing 2012
23. D.H. Alexander, J. Novembre, and K. Lange Fast model-based estimation of ancestry in unrelated individuals Genome Res. 19 9 2009 1655 1664
24. S. Purcell, B. Neale, K. Todd-Brown, L. Thomas, M.A. Ferreira, D. Bender, J. Maller, P. Sklar, P.I. de Bakker, and M.J. Daly PLINK: a tool set for whole-genome association and population-based linkage analyses Am. J. Hum. Genet. 81 3 2007 559 575 (Pubitemid 47330214)
25. C. Phillips, A. Salas, J.J. Sánchez, M. Fondevila, A. Gómez-Tato, J. Álvarez-Dios, M. Calaza, M.C. de Cal, D. Ballard, and M.V. Lareu Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs Forensic Sci. Int. Genet. 1 3-4 2007 273 280 (Pubitemid 47376569)
26. P. Taboada-Echalar, V. Álvarez-Iglesias, T. Heinz, L. Vidal-Bralo, A. Gómez-Carballa, L. Catelli, J. Pardo-Seco, A. Pastoriza, Á. Carracedo, and A. Torres-Balanza The genetic legacy of the pre-Colonial period in contemporary Bolivians PLoS ONE 8 3 2013 e58980
27. A. Salas, M. Richards, M.V. Lareu, B. Sobrino, S. Silva, M. Matamoros, V. Macaulay, and Á. Carracedo Shipwrecks and founder effects: divergent demographic histories reflected in Caribbean mtDNA Am. J. Phys. Anthropol. 128 2005 855 860 (Pubitemid 41746202)
28. J. Alves-Silva, M. da Silva Santos, P.E. Guimaraes, A.C. Ferreira, H.-J. Bandelt, S.D. Pena, and V.F. Prado The ancestry of Brazilian mtDNA lineages Am. J. Hum. Genet. 67 2 2000 444 461 (Pubitemid 30616746)
29. U. Toscanini, M. García-Magariños, G. Berardi, T. Egeland, E. Raimondi, and A. Salas Evaluating methods to correct for population stratification when estimating paternity indexes PLoS ONE 7 11 2012 e49832
30. U. Toscanini, A. Salas, M. García-Magariños, L. Gusmão, and E. Raimondi Population stratification in Argentina strongly influences likelihood ratio estimates in paternity testing as revealed by a simulation-based approach Int. J. Legal Med. 124 1 2010 63 69
31. M. Fondevila, C. Phillips, C. Santos, R. Pereira, L. Gusmão, Á. Carracedo, J.M. Butler, M.V. Lareu, and P.M. Vallone Forensic performance of two insertion-deletion marker assays Int. J. Legal Med. 126 5 2012 725 737