Molecular network and chemical fragment-based characteristics of medicinal herbs with cold and hot properties from Chinese medicine

Journal of Ethnopharmacology

Volumn 148, Issue 3, 2013, Pages 770-779

  Liang, Fei ^a,b   Li, Li ^a   Wang, Maolin ^b   Niu, Xuyan ^a   Zhan, Junping ^a   He, Xiaojuan ^a   Yu, Changyuan ^b   Jiang, Miao ^a   Lu, Aiping ^a,c,d  

^a INSTITUTE OF CHINESE MATERIA MEDICA   (China)

^b BEIJING UNIVERSITY OF CHEMICAL TECHNOLOGY   (China)

^c HONG KONG BAPTIST UNIVERSITY   (Hong Kong)

^d SHANGHAI UNIVERSITY OF TRADITIONAL CHINESE MEDICINE   (China)

Author keywords

Bioinformatics; Herbal medicine; Ingenuity Pathway Analysis; Property; Tradition Chinese medicine

Indexed keywords

APOCYNIN; AUCUBIN; BULBOCAPNINE; GENTIOPICRIN; JANUS KINASE 2; LIMONIN; PIPERINE; PLANT MEDICINAL PRODUCT; RAN PROTEIN; SITOSTEROL; TOLL LIKE RECEPTOR 4; TOLL LIKE RECEPTOR 7; TOLL LIKE RECEPTOR 8; TOLL LIKE RECEPTOR 9; URSOLIC ACID;

ACONITUM CARMICHAELII; ACONITUM NAPELLUS; ARTICLE; BIOINFORMATICS; BLACK PEPPER; CARDIOTOXICITY; CELL CYCLE; CELL DEATH; CELL GROWTH; CELL MATURATION; CELL PROLIFERATION; CELL STRUCTURE; CELL SURVIVAL; CHEMICAL STRUCTURE; CHINESE MEDICINE; CLINICAL PRACTICE; COLD; CONNECTIVE TISSUE; COPTIS CHINENSIS; DNA DAMAGE CHECKPOINT; DNA REPLICATION; ENDOCRINE DISEASE; GARDENIA JASMINOIDES; GENE EXPRESSION; GENTIAN; HEAT; HERBAL MEDICINE; INTRACELLULAR SIGNALING; ISATIS; LIPID METABOLISM; LIVER TOXICITY; MEDICAL LITERATURE; NEOPLASM; NEPHROTOXICITY; PIPER LONGUM; PRESCRIPTION; RHIZOME; RHUBARB; SCUTELLARIA BAICALENSIS; SECOND MESSENGER; SIGNAL TRANSDUCTION; SOPHORA; TETRADIUM RUTICARPUM; ZINGIBER;

BIOINFORMATICS; HERBAL MEDICINE; INGENUITY PATHWAY ANALYSIS; PROPERTY; TRADITION CHINESE MEDICINE;

COMPUTATIONAL BIOLOGY; DRUGS, CHINESE HERBAL; MEDICINE, CHINESE TRADITIONAL; PLANTS, MEDICINAL; PROTEINS; SIGNAL TRANSDUCTION;

EID: 84880264813     PISSN: 03788741     EISSN: 18727573     Source Type: Journal    
DOI: 10.1016/j.jep.2013.04.055     Document Type: Article

References (44)

1. C.J. Cairney, and W.N. Keith Telomerase redefined: integrated regulation of hTR and hTERT for telomere maintenance and telomerase activity Biochimie 90 2008 13 23
2. J.B. Calixto, M.M. Campos, M.F. Otuki, and A.R. Santos Anti-inflammatory compounds of plant origin. Part II. modulation of pro-inflammatory cytokines, chemokines and adhesion molecules Planta Medica 70 2004 93 103
3. C.H. Chen, K.G. Dickman, M. Moriya, J. Zavadil, V.S. Sidorenko, K.L. Edwards, D.V. Gnatenko, L. Wu, R.J. Turesky, X.R. Wu, Y.S. Pu, and A.P. Grollman Aristolochic acid-associated urothelial cancer in Taiwan Proceedings of the National Academy of Sciences of the United States of America 109 2012 8241 8246
4. G. Chen, C. Lu, Q. Zha, C. Xiao, S. Xu, D. Ju, Y. Zhou, W. Jia, and A. Lu A network-based analysis of traditional Chinese medicine cold and hot patterns in rheumatoid arthritis Complementary Therapies in Medicine 20 2012 23 30
5. M. Croft, W. Duan, H. Choi, S.Y. Eun, S. Madireddi, and A. Mehta TNF superfamily in inflammatory disease: translating basic insights Trends in Immunology 33 2012 144 152
6. M.B. Dail, L.A. Shack, J.E. Chambers, and S.C. Burgess Global liver proteomics of rats exposed for 5 days to phenobarbital identifies changes associated with cancer and with CYP metabolism Toxicological Sciences: An Official Journal of the Society of Toxicology 106 2008 556 569
7. S.H. Day, J.P. Wang, S.J. Won, and C.N. Lin Bioactive constituents of the roots of Cynanchum atratum Journal of Natural Products 64 2001 608 611
8. C.D. Dodson, L.A. Dyer, J. Searcy, Z. Wrigh, and D.K. Letourneau Cenocladamide, a dihydropyridone alkaloid from Piper cenocladum Phytochemistry 53 2000 51 54
9. R. Dubey, R. Chhabra, and N. Saini Small interfering RNA against transcription factor STAT6 leads to increased cholesterol synthesis in lung cancer cell lines PloS One 6 2011 e28509
10. P. Giang, H. Jin, P. Son, J. Lee, Y. Hong, and J.J. Lee ent-Kaurane diterpenoids from croton tonkinensis inhibit LPS-induced NF-kappaB activation and NO production Journal of Natural Products 66 2003 1217 1220
11. A.P. Grollman Aristolochic acid nephropathy: harbinger of a global iatrogenic disease Environmental and Molecular Mutagenesis 54 2013 1 7
12. J.Q. Gu, Y. Wang, S.G. Franzblau, G. Montenegro, D. Yang, and B.N. Timmermann Antitubercular constituents of Valeriana laxiflora Planta Medica 70 2004 509 514
13. M. Ilhan, J.P. Long, and J.G. Cannon Bulbocapnine's ability to antagonize the adrenergic inhibitory action of dopamine and analogs European Journal of Pharmacology 33 1975 13 18
14. L. Jia, Y. Zhao, X. Xing, J. Wang, W. Zou, R. Li, H. Yang, D. Cheng, and X. Xiao Investigation of differences between cold and hot nature of Mahuang decoction and Maxing Shigan decoction based on cold/hot plate differentiating assay Zhongguo Zhong yao za zhi=Zhongguo zhongyao zazhi=China Journal of Chinese Materia Medica 35 2010 2741 2744
15. M. Jiang, C. Xiao, G. Chen, C. Lu, Q. Zha, X. Yan, W. Kong, S. Xu, D. Ju, P. Xu, Y. Zou, and A. Lu Correlation between cold and hot pattern in traditional Chinese medicine and gene expression profiles in rheumatoid arthritis Frontiers of Medicine 5 2011 219 228
16. M. Jiang, C. Zhang, H. Cao, K. Chan, and A. Lu The role of Chinese medicine in the treatment of chronic diseases in China Planta Medica 77 2011 873 881
17. M. Jiang, C. Zhang, G. Zheng, H. Guo, L. Li, J. Yang, C. Lu, W. Jia, and A. Lu Traditional chinese medicine zheng in the era of evidence-based medicine: a literature analysis Evidence-Based Complementary and Alternative Medicine: eCAM 2012 2012 409568, 10.1155/2012/409568
18. B. Jin, T. Sun, X.H. Yu, Y.X. Yang, and A.E. Yeo The effects of TLR activation on T-cell development and differentiation Clinical and Developmental Immunology 2012 2012 836485
19. S. Li, B. Zhang, D. Jiang, Y. Wei, and N. Zhang Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae BMC Bioinformatics 11 Suppl. 11 2010 S6
20. J.C. Lim, J.H. Park, M. Budesinsky, A. Kasal, Y.H. Han, B.S. Koo, S.I. Lee, and D.U. Lee Antimutagenic constituents from the thorns of Gleditsia sinensis Chemical and Pharmaceutical Bulletin 53 2005 561 564
21. Y.Q. Liu, M.C. Cheng, L.X. Wang, N. Zhao, H.B. Xiao, and Z.T. Wang Functional analysis of cultured neural cells for evaluating cold/cool- and hot/warm-natured Chinese herbs The American Journal of Chinese Medicine 36 2008 771 781
22. W. Long, P. Liu, J. Xiang, X. Pi, J. Zhang, and Z. Zou A combination system for prediction of Chinese Materia Medica properties Computer Methods and Programs in Biomedicine 101 2011 253 264
23. C. Lu, Q. Zha, A. Chang, Y. He, and A. Lu Pattern differentiation in Traditional Chinese Medicine can help define specific indications for biomedical therapy in the treatment of rheumatoid arthritis Journal of Alternative and Complementary Medicine 15 2009 1021 1025
24. T. Morikawa, H. Matsuda, I. Yamaguchi, Y. Pongpiriyadacha, and M. Yoshikawa New amides and gastroprotective constituents from the fruit of Piper chaba Planta Medica 70 2004 152 159
25. Z. Ovesna, A. Vachalkova, and K. Horvathova Taraxasterol and beta-sitosterol: new naturally compounds with chemoprotective/chemopreventive effects Neoplasma 51 2004 407 414
26. D.G. Remick Interleukin-8 Critical Care Medicine 33 2005 S466 467
27. V. Romanov, T. Whyard, R. Bonala, F. Johnson, and A. Grollman Glutamate dehydrogenase requirement for apoptosis induced by aristolochic acid in renal tubular epithelial cells Apoptosis: An International Journal on Programmed Cell Death 16 2011 1217 1228
28. D. Scott, M. Ehebauer, T. Pukala, M. Marsh, T. Blundell, A. Venkitaraman, C. Abell, and M. Hyvonen Using a fragment-based approach to target protein-protein interactions Chembiochem 14 2013 332 342
29. A. Shafiee, K. Morteza-Semnani, and M. Amini (+)-Bulbocapnine-beta-N- oxide from Glaucium fimbrilligerum Journal of Natural Products 61 1998 1564 1565
30. L. Sheng The relationship between herb's 4 natures and 5 flavors Chinese Journal of Integrated Traditional and Western Medicine 11 2004 2804 2806
31. F. Sui, N. Yang, C. Zhang, X. Du, L. Li, X. Weng, S. Guo, H. Huo, and T. Jiang Effects of ingredients from Chinese herbs with nature of cold or hot on expression of TRPV1 and TRPM8 Zhongguo Zhong yao za zhi=Zhongguo zhongyao zazhi=China Journal of Chinese Materia Medica 35 2010 1594 1598
32. K. Taguchi, H. Motohashi, and M. Yamamoto Molecular mechanisms of the Keap1-Nrf2 pathway in stress response and cancer evolution Genes to Cells: Devoted to Molecular & Cellular Mechanisms 16 2011 123 140
33. H. van Wietmarschen, K. Yuan, C. Lu, P. Gao, J. Wang, C. Xiao, X. Yan, M. Wang, J. Schroen, A. Lu, G. Xu, and J. van der Greef Systems biology guided by Chinese medicine reveals new markers for sub-typing rheumatoid arthritis patients Journal of Clinical Rheumatology: Practical Reports on Rheumatic & Musculoskeletal Diseases 15 2009 330 337
34. C.H. Wang, X.M. Cheng, Y.Q. He, K.N. White, S.W. Bligh, C.J. Branford-White, and Z.T. Wang Pharmacokinetic behavior of gentiopicroside from decoction of Radix Gentianae, Gentiana macrophylla after oral administration in rats: a pharmacokinetic comaprison with gentiopicroside after oral and intravenous administration alone Archives of Pharmacal Research 30 2007 1149 1154
35. H. Wang, Y. Dou, J. Tian, F. Li, S. Wang, and Z. Wang Research on medical speciality of traditional Chinese medicines using dot-immunoblotting method based on polyclonal antibody prepared from traditional Chinese medicines with hot/cold nature Zhongguo Zhong yao za zhi=Zhongguo zhongyao zazhi=China Journal of Chinese Materia Medica 34 2009 438 442
36. Y. Wang, E. Bolton, S. Dracheva, K. Karapetyan, B.A. Shoemaker, T.O. Suzek, J. Wang, J. Xiao, J. Zhang, and S.H. Bryant An overview of the PubChem BioAssay resource Nucleic acids Research 38 2010 D255 266
37. T. Wu, M. Hsu, P. Kuo, B. Sreenivasulu, A. Damu, C. Su, C. Li, and H.C. Chang Constituents from the leaves of Phellodendron amurense var. wilsonii and their bioactivity Journal of Natural Products 66 2003 1207 1211
38. X.H. Xiao Speculating about scientific investigation on nature of Chinese Materia Medica Chinese Traditional and Herbal Drugs 39 2008 481 484
39. H.B. Yang, Y.L. Zhao, B.C. Li, J.B. Wang, R.S. Li, L. Jia, D.H. Cheng, and X.H. Xiao COLD or HOT natural attribute of Zuojinwan and Fanzuojinwan based on temperature tropism of mice Yao xue xue bao=Acta Pharmaceutica Sinica 45 2010 791 796
40. T. Yoshizawa, D. Hammaker, D.L. Boyle, M. Corr, R. Flavell, R. Davis, G. Schett, and G.S. Firestein Role of MAPK kinase 6 in arthritis: distinct mechanism of action in inflammation and cytokine expression Journal of Immunology 183 2009 1360 1367
41. Z.Y. Yu, B. Wang, and Y. Lu Initial quest for the function transformation of organ and tissues caused by four properties of Chinese material medica Shanghai Journal of Traditional Chinese Medicine 4 2006 1 3
42. D. Yudin, and M. Fainzilber Ran on tracks - cytoplasmic roles for a nuclear regulator Journal of Cell Science 122 2009 587 593
43. Y.L. Zhao, J.B. Wang, X.H. Xiao, H.P. Zhao, C.P. Zhou, X.R. Zhang, Y.S. Ren, and L. Jia Study on the cold and hot properties of medicinal herbs by thermotropism in mice behavior Journal of Ethnopharmacology 133 2011 980 985
44. S.H. Zhou, X.H. Xiao, Y.L. Zhao, C.M. Dai, J.C. Zhu, and Y. Liu Biothermokinetic studies on four properties of traditional Chinese medicine: comparison of properties of Zuojinwan and Fanzuojin by microcalorimetry China Journal of Chinese Materia Medica 29 2004 1183 1185