-
1
-
-
73449088379
-
Vaccines: The fourth century
-
2-s2.0-73449088379 10.1128/CVI.00290-09
-
Plotkin S. A., Vaccines: the fourth century. Clinical and Vaccine Immunology 2009 16 12 1709 1719 2-s2.0-73449088379 10.1128/CVI.00290-09
-
(2009)
Clinical and Vaccine Immunology
, vol.16
, Issue.12
, pp. 1709-1719
-
-
Plotkin, S.A.1
-
2
-
-
37149052106
-
Epitope-based vaccine against influenza
-
DOI 10.1586/14760584.6.6.939
-
Ben-Yedidia T., Arnon R., Epitope-based vaccine against influenza. Expert Review of Vaccines 2007 6 6 939 948 2-s2.0-37149052106 10.1586/14760584.6.6.939 (Pubitemid 350260657)
-
(2007)
Expert Review of Vaccines
, vol.6
, Issue.6
, pp. 939-948
-
-
Ben-Yedidia, T.1
Arnon, R.2
-
3
-
-
79956079190
-
Immunological mechanisms of vaccination
-
2-s2.0-79956079190 10.1038/ni.2039
-
Pulendran B., Ahmed R., Immunological mechanisms of vaccination. Nature Immunology 2011 12 6 509 517 2-s2.0-79956079190 10.1038/ni.2039
-
(2011)
Nature Immunology
, vol.12
, Issue.6
, pp. 509-517
-
-
Pulendran, B.1
Ahmed, R.2
-
4
-
-
79956114010
-
Pathogen-associated molecular patterns on biomaterials: A paradigm for engineering new vaccines
-
2-s2.0-79956114010 10.1016/j.tibtech.2011.02.004
-
Demento S. L., Siefert A. L., Bandyopadhyay A., Sharp F. A., Fahmy T. M., Pathogen-associated molecular patterns on biomaterials: a paradigm for engineering new vaccines. Trends in Biotechnology 2011 29 6 294 306 2-s2.0-79956114010 10.1016/j.tibtech.2011.02.004
-
(2011)
Trends in Biotechnology
, vol.29
, Issue.6
, pp. 294-306
-
-
Demento, S.L.1
Siefert, A.L.2
Bandyopadhyay, A.3
Sharp, F.A.4
Fahmy, T.M.5
-
5
-
-
83755173089
-
A cross-protective mAb recognizes a novel epitope within the flavivirus NS1 protein
-
2-s2.0-83755173089 10.1099/vir.0.036640-0
-
Lee T. H., Song B.-H., Yun S.-I., Woo H. R., Lee Y.-M., Diamond M. S., Chung K. M., A cross-protective mAb recognizes a novel epitope within the flavivirus NS1 protein. Journal of General Virology 2012 93 1 20 26 2-s2.0-83755173089 10.1099/vir.0.036640-0
-
(2012)
Journal of General Virology
, vol.93
, Issue.1
, pp. 20-26
-
-
Lee, T.H.1
Song, B.-H.2
Yun, S.-I.3
Woo, H.R.4
Lee, Y.-M.5
Diamond, M.S.6
Chung, K.M.7
-
6
-
-
46149124765
-
Perspectives for the utilization of neutralizing human monoclonal antibodies as anti-HCV drugs
-
2-s2.0-46149124765 10.1016/j.jhep.2008.05.008
-
Burioni R., Perotti M., Mancini N., Clementi M., Perspectives for the utilization of neutralizing human monoclonal antibodies as anti-HCV drugs. Journal of Hepatology 2008 49 2 299 300 2-s2.0-46149124765 10.1016/j.jhep.2008. 05.008
-
(2008)
Journal of Hepatology
, vol.49
, Issue.2
, pp. 299-300
-
-
Burioni, R.1
Perotti, M.2
Mancini, N.3
Clementi, M.4
-
7
-
-
80052849858
-
A potential role for monoclonal antibodies in prophylactic and therapeutic treatment of influenza
-
2-s2.0-80052849858 10.1016/j.antiviral.2011.07.013
-
Mancini N., Solforosi L., Clementi N., De Marco D., Clementi M., Burioni R., A potential role for monoclonal antibodies in prophylactic and therapeutic treatment of influenza. Antiviral Research 2011 92 1 15 26 2-s2.0-80052849858 10.1016/j.antiviral.2011.07.013
-
(2011)
Antiviral Research
, vol.92
, Issue.1
, pp. 15-26
-
-
Mancini, N.1
Solforosi, L.2
Clementi, N.3
De Marco, D.4
Clementi, M.5
Burioni, R.6
-
8
-
-
84869190870
-
Broad-range neutralizing anti-influenza A human monoclonal antibodies: New perspectives in therapy and prophylaxis
-
Clementi N., Criscuolo E., Castelli M., Clementi M., Broad-range neutralizing anti-influenza A human monoclonal antibodies: new perspectives in therapy and prophylaxis. New Microbiologica 2012 35 4 399 406
-
(2012)
New Microbiologica
, vol.35
, Issue.4
, pp. 399-406
-
-
Clementi, N.1
Criscuolo, E.2
Castelli, M.3
Clementi, M.4
-
9
-
-
80051670323
-
A neutralizing antibody selected from plasma cells that binds to group 1 and group 2 influenza A hemagglutinins
-
2-s2.0-80051670323 10.1126/science.1205669
-
Corti D., Voss J., Gamblin S. J., Codoni G., Macagno A., Jarrossay D., Vachieri S. G., Pinna D., Minola A., Vanzetta F., Silacci C., Fernandez-Rodriguez B. M., Agatic G., Bianchi S., Giacchetto-Sasselli I., Calder L., Sallusto F., Collins P., Haire L. F., Temperton N., Langedijk J. P. M., Skehel J. J., Lanzavecchia A., A neutralizing antibody selected from plasma cells that binds to group 1 and group 2 influenza A hemagglutinins. Science 2011 333 6044 850 856 2-s2.0-80051670323 10.1126/science.1205669
-
(2011)
Science
, vol.333
, Issue.6044
, pp. 850-856
-
-
Corti, D.1
Voss, J.2
Gamblin, S.J.3
Codoni, G.4
Macagno, A.5
Jarrossay, D.6
Vachieri, S.G.7
Pinna, D.8
Minola, A.9
Vanzetta, F.10
Silacci, C.11
Fernandez-Rodriguez, B.M.12
Agatic, G.13
Bianchi, S.14
Giacchetto-Sasselli, I.15
Calder, L.16
Sallusto, F.17
Collins, P.18
Haire, L.F.19
Temperton, N.20
Langedijk, J.P.M.21
Skehel, J.J.22
Lanzavecchia, A.23
more..
-
10
-
-
0027471177
-
A common neutralizing epitope conserved between the hemagglutinins of influenza A virus H1 and H2 strains
-
Okuno Y., Isegawa Y., Sasao F., Ueda S., A common neutralizing epitope conserved between the hemagglutinins of influenza A virus H1 and H2 strains. Journal of Virology 1993 67 5 2552 2558 2-s2.0-0027471177 (Pubitemid 23118850)
-
(1993)
Journal of Virology
, vol.67
, Issue.5
, pp. 2552-2558
-
-
Okuno, Y.1
Isegawa, Y.2
Sasao, F.3
Ueda, S.4
-
11
-
-
84864350649
-
Phage display-based strategies for cloning and optimization of monoclonal antibodies directed against human pathogens
-
Clementi N., Mancini N., Solforosi L., Castelli M., Clementi M., Burioni R., Phage display-based strategies for cloning and optimization of monoclonal antibodies directed against human pathogens. International Journal of Molecular Sciences 2012 13 7 8273 8292
-
(2012)
International Journal of Molecular Sciences
, vol.13
, Issue.7
, pp. 8273-8292
-
-
Clementi, N.1
Mancini, N.2
Solforosi, L.3
Castelli, M.4
Clementi, M.5
Burioni, R.6
-
12
-
-
77956556232
-
Influenza hemagglutinin and neuraminidase membrane glycoproteins
-
2-s2.0-77956556232 10.1074/jbc.R110.129809
-
Gamblin S. J., Skehel J. J., Influenza hemagglutinin and neuraminidase membrane glycoproteins. Journal of Biological Chemistry 2010 285 37 28403 28409 2-s2.0-77956556232 10.1074/jbc.R110.129809
-
(2010)
Journal of Biological Chemistry
, vol.285
, Issue.37
, pp. 28403-28409
-
-
Gamblin, S.J.1
Skehel, J.J.2
-
13
-
-
0141737104
-
Crystal structure of the M1 protein-binding domain of the influenza A virus nuclear export protein (NEP/NS2)
-
DOI 10.1093/emboj/cdg449
-
Akarsu H., Burmeister W. P., Petosa C., Petit I., Müller C. W., Ruigrok R. W. H., Baudin F., Crystal structure of the M1 protein-binding domain of the influenza A virus nuclear export protein (NEP/NS2). EMBO Journal 2003 22 18 4646 4655 2-s2.0-0141737104 10.1093/emboj/cdg449 (Pubitemid 37162901)
-
(2003)
EMBO Journal
, vol.22
, Issue.18
, pp. 4646-4655
-
-
Akarsu, H.1
Burmeister, W.P.2
Petosa, C.3
Petit, I.4
Muller, C.W.5
Ruigrok, R.W.H.6
Baudin, F.7
-
14
-
-
27144541763
-
Determination of protein-derived epitopes by mass spectrometry
-
DOI 10.1586/14789450.2.5.745
-
Hager-Braun C., Tomer K. B., Determination of protein-derived epitopes by mass spectrometry. Expert Review of Proteomics 2005 2 5 745 756 2-s2.0-27144541763 10.1586/14789450.2.5.745 (Pubitemid 41492395)
-
(2005)
Expert Review of Proteomics
, vol.2
, Issue.5
, pp. 745-756
-
-
Hager-Braun, C.1
Tomer, K.B.2
-
15
-
-
84880177118
-
Epitope mapping of antibodies by mass spectroscopy: A case study
-
Obungu V. H., Gelfanova V., Huang L., Epitope mapping of antibodies by mass spectroscopy: a case study. Methods in Molecular Biology 2013 988 291 302
-
(2013)
Methods in Molecular Biology
, vol.988
, pp. 291-302
-
-
Obungu, V.H.1
Gelfanova, V.2
Huang, L.3
-
16
-
-
77956883580
-
Characterization of a discontinuous epitope of the HIV envelope protein gp120 recognized by a human monoclonal antibody using chemical modification and mass spectrometric analysis
-
2-s2.0-77956883580 10.1016/j.jasms.2010.03.031
-
Hager-Braun C., Hochleitner E. O., Gorny M. K., Zolla-Pazner S., Bienstock R. J., Tomer K. B., Characterization of a discontinuous epitope of the HIV envelope protein gp120 recognized by a human monoclonal antibody using chemical modification and mass spectrometric analysis. Journal of the American Society for Mass Spectrometry 2010 21 10 1687 1698 2-s2.0-77956883580 10.1016/j.jasms.2010.03.031
-
(2010)
Journal of the American Society for Mass Spectrometry
, vol.21
, Issue.10
, pp. 1687-1698
-
-
Hager-Braun, C.1
Hochleitner, E.O.2
Gorny, M.K.3
Zolla-Pazner, S.4
Bienstock, R.J.5
Tomer, K.B.6
-
17
-
-
84877023961
-
Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids
-
Bereszczak J. Z., Rose R. J., van Duijn E., Watts N. R., Wingfield P. T., Steven A. C., Heck A. J., Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids. Journal of the American Chemical Society 2013 135 17 6504 6512
-
(2013)
Journal of the American Chemical Society
, vol.135
, Issue.17
, pp. 6504-6512
-
-
Bereszczak, J.Z.1
Rose, R.J.2
Van Duijn, E.3
Watts, N.R.4
Wingfield, P.T.5
Steven, A.C.6
Heck, A.J.7
-
18
-
-
84875794999
-
Novel biopanning strategy to identify epitopes associated with vaccine protection
-
Bachler B. C., Humbert M., Palikuqi B., Siddappa N. B., Lakhashe S. K., Rasmussen R. A., Ruprecht R. M., Novel biopanning strategy to identify epitopes associated with vaccine protection. Journal of Virology 2013 87 8 4403 4416
-
(2013)
Journal of Virology
, vol.87
, Issue.8
, pp. 4403-4416
-
-
Bachler, B.C.1
Humbert, M.2
Palikuqi, B.3
Siddappa, N.B.4
Lakhashe, S.K.5
Rasmussen, R.A.6
Ruprecht, R.M.7
-
19
-
-
0028585843
-
Constrained peptide libraries as a tool for finding mimotopes
-
2-s2.0-0028585843 10.1016/0378-1119(94)90640-8
-
McConnell S. J., Kendall M. L., Reilly T. M., Hoess R. H., Constrained peptide libraries as a tool for finding mimotopes. Gene 1994 151 1-2 115 118 2-s2.0-0028585843 10.1016/0378-1119(94)90640-8
-
(1994)
Gene
, vol.151
, Issue.1-2
, pp. 115-118
-
-
McConnell, S.J.1
Kendall, M.L.2
Reilly, T.M.3
Hoess, R.H.4
-
20
-
-
80052876042
-
MimoPro: A more efficient Web-based tool for epitope prediction using phage display libraries
-
2-s2.0-80052876042 10.1186/1471-2105-12-199
-
Chen W. H., Sun P. P., Lu Y., Guo W. W., Huang Y. X., Ma Z. Q., MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries. BMC Bioinformatics 2011 12, article 199 2-s2.0-80052876042 10.1186/1471-2105-12-199
-
(2011)
BMC Bioinformatics
, pp. 12
-
-
Chen, W.H.1
Sun, P.P.2
Lu, Y.3
Guo, W.W.4
Huang, Y.X.5
Ma, Z.Q.6
-
21
-
-
33750341091
-
MIMOX: A web tool for phage display based epitope mapping
-
DOI 10.1186/1471-2105-7-451
-
Huang J., Gutteridge A., Honda W., Kanehisa M., MIMOX: a web tool for phage display based epitope mapping. BMC Bioinformatics 2006 7, article 451 2-s2.0-33750341091 10.1186/1471-2105-7-451 (Pubitemid 44614254)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 451
-
-
Huang, J.1
Gutteridge, A.2
Honda, W.3
Kanehisa, M.4
-
22
-
-
36549031650
-
Pepitope: Epitope mapping from affinity-selected peptides
-
DOI 10.1093/bioinformatics/btm493
-
Mayrose I., Penn O., Erez E., Rubinstein N. D., Shlomi T., Freund N. T., Bublil E. M., Ruppin E., Sharan R., Gershoni J. M., Martz E., Pupko T., Pepitope: epitope mapping from affinity-selected peptides. Bioinformatics 2007 23 23 3244 3246 2-s2.0-36549031650 10.1093/bioinformatics/btm493 (Pubitemid 350187529)
-
(2007)
Bioinformatics
, vol.23
, Issue.23
, pp. 3244-3246
-
-
Mayrose, I.1
Penn, O.2
Erez, E.3
Rubinstein, N.D.4
Shlomi, T.5
Freund, N.T.6
Bublil, E.M.7
Ruppin, E.8
Sharan, R.9
Gershoni, J.M.10
Martz, E.11
Pupko, T.12
-
23
-
-
84861468049
-
MimoDB 2. 0: A mimotope database and beyond
-
Huang J., Ru B., Zhu P., Nie F., Yang J., Wang X., Dai P., Lin H., Guo F. B., Rao N., MimoDB 2. 0: a mimotope database and beyond. Nucleic Acids Research 2012 40 271 277
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 271-277
-
-
Huang, J.1
Ru, B.2
Zhu, P.3
Nie, F.4
Yang, J.5
Wang, X.6
Dai, P.7
Lin, H.8
Guo, F.B.9
Rao, N.10
-
24
-
-
84877587654
-
Identification of rabies virus mimotopes screened from a phage display peptide library with purified dog anti-rabies virus serum IgG
-
10.1016/j.virusres.2013.02.013
-
Yang L., Cen J., Xue Q., Li J., Bi Y., Sun L., Liu W., Identification of rabies virus mimotopes screened from a phage display peptide library with purified dog anti-rabies virus serum IgG. Virus Research 2013 174 1-2 47 51 10.1016/j.virusres.2013.02.013
-
(2013)
Virus Research
, vol.174
, Issue.1-2
, pp. 47-51
-
-
Yang, L.1
Cen, J.2
Xue, Q.3
Li, J.4
Bi, Y.5
Sun, L.6
Liu, W.7
-
25
-
-
84870474074
-
Mimotopes selected by biopanning with high-titer HIV-neutralizing antibodies in plasma from Chinese slow progressors
-
Zhang X., Han X., Dai D., Bao M., Zhang Z., Zhang M., Bice T., Zhao M., Cao Y., Shang H., Mimotopes selected by biopanning with high-titer HIV-neutralizing antibodies in plasma from Chinese slow progressors. The Brazilian Journal of Infectious Diseases 2012 16 6 510 516
-
(2012)
The Brazilian Journal of Infectious Diseases
, vol.16
, Issue.6
, pp. 510-516
-
-
Zhang, X.1
Han, X.2
Dai, D.3
Bao, M.4
Zhang, Z.5
Zhang, M.6
Bice, T.7
Zhao, M.8
Cao, Y.9
Shang, H.10
-
26
-
-
34249725007
-
Epitope mapping: The first step in developing epitope-based vaccines
-
DOI 10.2165/00063030-200721030-00002
-
Gershoni J. M., Roitburd-Berman A., Siman-Tov D. D., Freund N. T., Weiss Y., Epitope mapping: the first step in developing epitope-based vaccines. BioDrugs 2007 21 3 145 156 2-s2.0-34249725007 10.2165/00063030-200721030-00002 (Pubitemid 46827848)
-
(2007)
BioDrugs
, vol.21
, Issue.3
, pp. 145-156
-
-
Gershoni, J.M.1
Roitburd-Berman, A.2
Siman-Tov, D.D.3
Freund, N.T.4
Weiss, Y.5
-
27
-
-
0022621996
-
Production and use of antibodies against synthetic peptides
-
DOI 10.1016/0022-1759(86)90001-3
-
Walter G., Production and use of antibodies against synthetic peptides. Journal of Immunological Methods 1986 88 2 149 161 2-s2.0-0022621996 (Pubitemid 16117976)
-
(1986)
Journal of Immunological Methods
, vol.88
, Issue.2
, pp. 149-161
-
-
Walter, G.1
-
28
-
-
75549084463
-
The immune epitope database 2.0
-
2-s2.0-75549084463 10.1093/nar/gkp1004
-
Vita R., Zarebski L., Greenbaum J. A., Emami H., Hoof I., Salimi N., Damle R., Sette A., Peters B., The immune epitope database 2.0. Nucleic Acids Research 2009 38 1 D854 D862 2-s2.0-75549084463 10.1093/nar/gkp1004
-
(2009)
Nucleic Acids Research
, vol.38
, Issue.1
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
Salimi, N.6
Damle, R.7
Sette, A.8
Peters, B.9
-
29
-
-
34248581488
-
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
-
DOI 10.1002/jmr.815
-
Greenbaum J. A., Andersen P. H., Blythe M., Bui H.-H., Cachau R. E., Crowe J., Davies M., Kolaskar A. S., Lund O., Morrison S., Mumey B., Ofran Y., Pellequer J.-L., Pinilla C., Ponomarenko J. V., Raghava G. P. S., Van Regenmortel M. H. V., Roggen E. L., Sette A., Schlessinger A., Sollner J., Zand M., Peters B., Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. Journal of Molecular Recognition 2007 20 2 75 82 2-s2.0-34248581488 10.1002/jmr.815 (Pubitemid 46761248)
-
(2007)
Journal of Molecular Recognition
, vol.20
, Issue.2
, pp. 75-82
-
-
Greenbaum, J.A.1
Andersen, P.H.2
Blythe, M.3
Bui, H.-H.4
Cachau, R.E.5
Crowe, J.6
Davies, M.7
Kolaskar, A.S.8
Lund, O.9
Morrison, S.10
Mumey, B.11
Ofran, Y.12
Pellequer, J.-L.13
Pinilla, C.14
Ponomarenko, J.V.15
Raghava, G.P.S.16
Van Regenmortel, M.H.V.17
Roggen, E.L.18
Sette, A.19
Schlessinger, A.20
Sollner, J.21
Zand, M.22
Peters, B.23
more..
-
30
-
-
11144246404
-
Benchmarking B cell epitope prediction: Underperformance of existing methods
-
DOI 10.1110/ps.041059505
-
Blythe M. J., Flower D. R., Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Science 2005 14 1 246 248 2-s2.0-11144246404 10.1110/ps.041059505 (Pubitemid 40054138)
-
(2005)
Protein Science
, vol.14
, Issue.1
, pp. 246-248
-
-
Blythe, M.J.1
Flower, D.R.2
-
31
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
Larsen J. E., Lund O., Nielsen M., Improved method for predicting linear B-cell epitopes. Immunome Research 2006 2, article 2
-
(2006)
Immunome Research
, vol.22
-
-
Larsen, J.E.1
Lund, O.2
Nielsen, M.3
-
32
-
-
33748254730
-
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
-
DOI 10.1002/prot.21078
-
Saha S., Raghava G. P. S., Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 2006 65 1 40 48 2-s2.0-33748254730 10.1002/prot.21078 (Pubitemid 44320614)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 40-48
-
-
Saha, S.1
Raghava, G.P.S.2
-
33
-
-
0017157584
-
A simplified representation of protein conformations for rapid stimulation of protein folding
-
2-s2.0-0017157584
-
Levitt M., A simplified representation of protein conformations for rapid stimulation of protein folding. Journal of Molecular Biology 1976 104 1 59 107 2-s2.0-0017157584
-
(1976)
Journal of Molecular Biology
, vol.104
, Issue.1
, pp. 59-107
-
-
Levitt, M.1
-
34
-
-
0023055775
-
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: Correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites
-
2-s2.0-0023055775
-
Parker J. M. R., Guo D., Hodges R. S., New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry 1986 25 19 5425 5432 2-s2.0-0023055775
-
(1986)
Biochemistry
, vol.25
, Issue.19
, pp. 5425-5432
-
-
Parker, J.M.R.1
Guo, D.2
Hodges, R.S.3
-
35
-
-
47649130438
-
Predicting linear B-cell epitopes using string kernels
-
DOI 10.1002/jmr.893
-
El-Manzalawy Y., Dobbs D., Honavar V., Predicting linear B-cell epitopes using string kernels. Journal of Molecular Recognition 2008 21 4 243 255 2-s2.0-47649130438 10.1002/jmr.893 (Pubitemid 352019054)
-
(2008)
Journal of Molecular Recognition
, vol.21
, Issue.4
, pp. 243-255
-
-
El-Manzalawy, Y.1
Dobbs, D.2
Honavar, V.3
-
36
-
-
60749128663
-
COBEpro: A novel system for predicting continuous B-cell epitopes
-
2-s2.0-60749128663 10.1093/protein/gzn075
-
Sweredoski M. J., Baldi P., COBEpro: a novel system for predicting continuous B-cell epitopes. Protein Engineering, Design and Selection 2009 22 3 113 120 2-s2.0-60749128663 10.1093/protein/gzn075
-
(2009)
Protein Engineering, Design and Selection
, vol.22
, Issue.3
, pp. 113-120
-
-
Sweredoski, M.J.1
Baldi, P.2
-
37
-
-
84884171787
-
Prediction of B-cell epitopes using evolutionary information and propensity scales
-
Supplement 2
-
Lin S. Y., Cheng C. W., Su E. C., Prediction of B-cell epitopes using evolutionary information and propensity scales. BMC Bioinformatics 2013 14, article S10 Supplement 2
-
(2013)
BMC Bioinformatics
, vol.1410
-
-
Lin, S.Y.1
Cheng, C.W.2
Su, E.C.3
-
38
-
-
39449119829
-
Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins
-
DOI 10.1186/1745-7580-4-1
-
Sollner J., Grohmann R., Rapberger R., Perco P., Lukas A., Mayer B., Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins. Immunome Research 2008 4 1, article 1 2-s2.0-39449119829 10.1186/1745-7580-4-1 (Pubitemid 351269079)
-
(2008)
Immunome Research
, vol.4
, Issue.1
, pp. 1
-
-
Sollner, J.1
Grohmann, R.2
Rapberger, R.3
Perco, P.4
Lukas, A.5
Mayer, B.6
-
39
-
-
23144457577
-
CEP: A conformational epitope prediction server
-
DOI 10.1093/nar/gki460
-
Kulkarni-Kale U., Bhosle S., Kolaskar A. S., CEP: a conformational epitope prediction server. Nucleic Acids Research 2005 33 2 W168 W171 2-s2.0-23144457577 10.1093/nar/gki460 (Pubitemid 44529902)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISSUE
-
-
Kulkarni-Kale, U.1
Bhosle, S.2
Kolaskar, A.S.3
-
40
-
-
33751099863
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
-
DOI 10.1110/ps.062405906
-
Andersen P. H., Nielsen M., Lund O., Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Science 2006 15 11 2558 2567 2-s2.0-33751099863 10.1110/ps.062405906 (Pubitemid 44771693)
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2558-2567
-
-
Andersen, P.H.1
Nielsen, M.2
Lund, O.3
-
41
-
-
84872049601
-
Reliable B cell epitope predictions: Impacts of method development and improved benchmarking
-
e1002829
-
Kringelum J. V., Lundegaard C., Lund O., Nielsen M., Reliable B cell epitope predictions: impacts of method development and improved benchmarking. PLoS Computational Biology 2012 8 12 e1002829
-
(2012)
PLoS Computational Biology
, vol.8
, Issue.12
-
-
Kringelum, J.V.1
Lundegaard, C.2
Lund, O.3
Nielsen, M.4
-
42
-
-
77954543849
-
EPSVR and EPMeta: Prediction of antigenic epitopes using support vector regression and multiple server results
-
2-s2.0-77954543849 10.1186/1471-2105-11-381
-
Liang S., Zheng D., Standley D. M., Yao B., Zacharias M., Zhang C., EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. BMC Bioinformatics 2010 11, article 381 2-s2.0-77954543849 10.1186/1471-2105-11-381
-
(2010)
BMC Bioinformatics
, pp. 11381
-
-
Liang, S.1
Zheng, D.2
Standley, D.M.3
Yao, B.4
Zacharias, M.5
Zhang, C.6
-
43
-
-
67849086859
-
SEPPA: A computational server for spatial epitope prediction of protein antigens
-
2-s2.0-67849086859 10.1093/nar/gkp417
-
Sun J., Wu D., Xu T., Wang X., Xu X., Tao L., Li Y. X., Cao Z. W., SEPPA: a computational server for spatial epitope prediction of protein antigens. Nucleic Acids Research 2009 37 2 W612 W616 2-s2.0-67849086859 10.1093/nar/gkp417
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.2
-
-
Sun, J.1
Wu, D.2
Xu, T.3
Wang, X.4
Xu, X.5
Tao, L.6
Li, Y.X.7
Cao, Z.W.8
-
44
-
-
45449086674
-
PEPITO: Improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
-
DOI 10.1093/bioinformatics/btn199
-
Sweredoski M. J., Baldi P., PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure. Bioinformatics 2008 24 12 1459 1460 2-s2.0-45449086674 10.1093/bioinformatics/ btn199 (Pubitemid 351851001)
-
(2008)
Bioinformatics
, vol.24
, Issue.12
, pp. 1459-1460
-
-
Sweredoski, M.J.1
Baldi, P.2
-
45
-
-
70449408296
-
Prediction of antigenic epitopes on protein surfaces by consensus scoring
-
2-s2.0-70449408296 10.1186/1471-2105-10-302
-
Liang S., Zheng D., Zhang C., Zacharias M., Prediction of antigenic epitopes on protein surfaces by consensus scoring. BMC Bioinformatics 2009 10, article 1471 302 2-s2.0-70449408296 10.1186/1471-2105-10-302
-
(2009)
BMC Bioinformatics
, pp. 302
-
-
Liang, S.1
Zheng, D.2
Zhang, C.3
Zacharias, M.4
-
46
-
-
58049187138
-
ElliPro: A new structure-based tool for the prediction of antibody epitopes
-
2-s2.0-58049187138 10.1186/1471-2105-9-514
-
Ponomarenko J., Bui H.-H., Li W., Fusseder N., Bourne P. E., Sette A., Peters B., ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC Bioinformatics 2008 9, article 514 2-s2.0-58049187138 10.1186/1471-2105-9-514
-
(2008)
BMC Bioinformatics
, vol.9514
-
-
Ponomarenko, J.1
Bui, H.-H.2
Li, W.3
Fusseder, N.4
Bourne, P.E.5
Sette, A.6
Peters, B.7
-
47
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
DOI 10.1006/jmbi.1993.1626
-
Sali A., Blundell T. L., Comparative protein modelling by satisfaction of spatial restraints. Journal of Molecular Biology 1993 234 3 779 815 2-s2.0-0027136282 10.1006/jmbi.1993.1626 (Pubitemid 24007801)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
48
-
-
70449441123
-
Epitopia: A web-server for predicting B-cell epitopes
-
2-s2.0-70449441123 10.1186/1471-2105-10-287
-
Rubinstein N. D., Mayrose I., Martz E., Pupko T., Epitopia: a web-server for predicting B-cell epitopes. BMC Bioinformatics 2009 10, article 1471 287 2-s2.0-70449441123 10.1186/1471-2105-10-287
-
(2009)
BMC Bioinformatics
, pp. 287
-
-
Rubinstein, N.D.1
Mayrose, I.2
Martz, E.3
Pupko, T.4
-
49
-
-
80051623308
-
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature
-
2-s2.0-80051623308 10.1186/1471-2105-12-341
-
Zhang W., Xiong Y., Zhao M., Zou H., Ye X., Liu J., Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature. BMC Bioinformatics 2011 12, article 341 2-s2.0-80051623308 10.1186/1471-2105-12-341
-
(2011)
BMC Bioinformatics
, pp. 12
-
-
Zhang, W.1
Xiong, Y.2
Zhao, M.3
Zou, H.4
Ye, X.5
Liu, J.6
-
50
-
-
77957984965
-
Identification of conformational B-cell Epitopes in an antigen from its primary sequence
-
2-s2.0-77957984965 10.1186/1745-7580-6-6
-
Ansari H. R., Raghava G. P., Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Research 2010 6 1, article 6 2-s2.0-77957984965 10.1186/1745-7580-6-6
-
(2010)
Immunome Research
, vol.6
, Issue.1
-
-
Ansari, H.R.1
Raghava, G.P.2
-
51
-
-
34548736008
-
Recent advances in antigen processing and presentation
-
DOI 10.1038/ni1516, PII NI1516
-
Jensen P. E., Recent advances in antigen processing and presentation. Nature Immunology 2007 8 10 1041 1048 2-s2.0-34548736008 10.1038/ni1516 (Pubitemid 47423752)
-
(2007)
Nature Immunology
, vol.8
, Issue.10
, pp. 1041-1048
-
-
Jensen, P.E.1
-
52
-
-
48749092592
-
The known unknowns of antigen processing and presentation
-
2-s2.0-48749092592 10.1038/nri2368
-
Vyas J. M., Van der Veen A. G., Ploegh H. L., The known unknowns of antigen processing and presentation. Nature Reviews Immunology 2008 8 8 607 618 2-s2.0-48749092592 10.1038/nri2368
-
(2008)
Nature Reviews Immunology
, vol.8
, Issue.8
, pp. 607-618
-
-
Vyas, J.M.1
Van Der Veen, A.G.2
Ploegh, H.L.3
-
53
-
-
0034648601
-
Advances in immunology: The HLA system (Second of two parts)
-
2-s2.0-0034648601 10.1056/NEJM200009143431106
-
Klein J., Sato A., Advances in immunology: the HLA system (Second of two parts). The New England Journal of Medicine 2000 343 11 782 786 2-s2.0-0034648601 10.1056/NEJM200009143431106
-
(2000)
The New England Journal of Medicine
, vol.343
, Issue.11
, pp. 782-786
-
-
Klein, J.1
Sato, A.2
-
54
-
-
0034618869
-
The HLA system: First of two parts
-
2-s2.0-0034618869 10.1056/NEJM200009073431006
-
Klein J. A. N., Sato A., The HLA system: first of two parts. The New England Journal of Medicine 2000 343 10 702 709 2-s2.0-0034618869 10.1056/NEJM200009073431006
-
(2000)
The New England Journal of Medicine
, vol.343
, Issue.10
, pp. 702-709
-
-
Klein, J.A.N.1
Sato, A.2
-
55
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee H.-G., Bachmann J., Emmerich N. P. N., Bachor O. A., Stevanović S., SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 1999 50 3-4 213 219 2-s2.0-0033388725 (Pubitemid 30099526)
-
(1999)
Immunogenetics
, vol.50
, Issue.3-4
, pp. 213-219
-
-
Rammensee, H.-G.1
Bachmann, J.2
Emmerich, N.P.N.3
Bachor, O.A.4
Stevanovic, S.5
-
56
-
-
44649153892
-
SYFPEITHI: Database for searching and T-cell epitope prediction
-
2-s2.0-44649153892
-
Schuler M. M., Nastke M.-D., Stevanovikć S., SYFPEITHI: database for searching and T-cell epitope prediction. Methods in Molecular Biology 2007 409 75 93 2-s2.0-44649153892
-
(2007)
Methods in Molecular Biology
, vol.409
, pp. 75-93
-
-
Schuler, M.M.1
Nastke, M.-D.2
Stevanovikć, S.3
-
57
-
-
84873593975
-
The IMGT/HLA database
-
2-s2.0-78651297098 10.1093/nar/gkq998
-
Robinson J., Mistry K., McWilliam H., Lopez R., Parham P., Marsh S. G. E., The IMGT/HLA database. Nucleic Acids Research 2013 41 D1222 D1227 2-s2.0-78651297098 10.1093/nar/gkq998
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Robinson, J.1
Mistry, K.2
McWilliam, H.3
Lopez, R.4
Parham, P.5
Marsh, S.G.E.6
-
59
-
-
0029018773
-
Ranking potential binding peptides to MHC molecules by a computational threading approach
-
2-s2.0-0029018773 10.1006/jmbi.1995.0293
-
Altuvia Y., Schueler O., Margalit H., Ranking potential binding peptides to MHC molecules by a computational threading approach. Journal of Molecular Biology 1995 249 2 244 250 2-s2.0-0029018773 10.1006/jmbi.1995.0293
-
(1995)
Journal of Molecular Biology
, vol.249
, Issue.2
, pp. 244-250
-
-
Altuvia, Y.1
Schueler, O.2
Margalit, H.3
-
60
-
-
0034725455
-
Modelling of the TCR-MHC-peptide complex
-
2-s2.0-0034725455 10.1006/jmbi.2000.3788
-
Michielin O., Luescher I., Karplus M., Modelling of the TCR-MHC-peptide complex. Journal of Molecular Biology 2000 300 5 1205 1235 2-s2.0-0034725455 10.1006/jmbi.2000.3788
-
(2000)
Journal of Molecular Biology
, vol.300
, Issue.5
, pp. 1205-1235
-
-
Michielin, O.1
Luescher, I.2
Karplus, M.3
-
61
-
-
0033523959
-
Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class I major histocompatibility proteins
-
DOI 10.1021/jm9910775
-
Rognan D., Lauemøller S. L., Holm A., Buus S., Tschinke V., Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins. Journal of Medicinal Chemistry 1999 42 22 4650 4658 2-s2.0-0033523959 10.1021/jm9910775 (Pubitemid 29530018)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.22
, pp. 4650-4658
-
-
Rognan, D.1
Lauemoller, S.L.2
Holm, A.3
Buus, S.4
Tschinke, V.5
-
62
-
-
33747892659
-
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations
-
DOI 10.1093/bioinformatics/btl216
-
Antes I., Siu S. W. I., Lengauer T., DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. Bioinformatics 2006 22 14 e16 e24 2-s2.0-33747892659 10.1093/bioinformatics/btl216 (Pubitemid 44288268)
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Antes, I.1
Siu, S.W.I.2
Lengauer, T.3
-
63
-
-
33646058599
-
Ab initio prediction of peptide-MHC binding geometry for diverse class i MHC allotypes
-
2-s2.0-33646058599 10.1002/prot.20831
-
Bordner A. J., Abagyan R., Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes. Proteins 2006 63 3 512 526 2-s2.0-33646058599 10.1002/prot.20831
-
(2006)
Proteins
, vol.63
, Issue.3
, pp. 512-526
-
-
Bordner, A.J.1
Abagyan, R.2
-
64
-
-
0345352755
-
Bioinformatics tools for identifying class I-restricted epitopes
-
DOI 10.1016/S1046-2023(02)00351-1
-
Martin W., Sbai H., De Groot A. S., Bioinformatics tools for identifying class I-restricted epitopes. Methods 2003 29 3 289 298 2-s2.0-0345352755 10.1016/S1046-2023(02)00351-1 (Pubitemid 36513445)
-
(2003)
Methods
, vol.29
, Issue.3
, pp. 289-298
-
-
Martin, W.1
Sbai, H.2
De Groot, A.S.3
-
65
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
2-s2.0-0028052724
-
Parker K. C., Bednarek M. A., Coligan J. E., Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. Journal of Immunology 1994 152 1 163 175 2-s2.0-0028052724
-
(1994)
Journal of Immunology
, vol.152
, Issue.1
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
66
-
-
25444476693
-
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
-
DOI 10.1186/1471-2105-6-132
-
Peters B., Sette A., Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinformatics 2005 6, article 132 2-s2.0-25444476693 10.1186/1471-2105-6- 132 (Pubitemid 41358015)
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 132
-
-
Peters, B.1
Sette, A.2
-
67
-
-
81255156922
-
Applications for T-cell epitope queries and tools in the immune epitope database and analysis resource
-
2-s2.0-81255156922 10.1016/j.jim.2010.10.010
-
Kim Y., Sette A., Peters B., Applications for T-cell epitope queries and tools in the immune epitope database and analysis resource. Journal of Immunological Methods 2011 374 1-2 62 69 2-s2.0-81255156922 10.1016/j.jim.2010. 10.010
-
(2011)
Journal of Immunological Methods
, vol.374
, Issue.1-2
, pp. 62-69
-
-
Kim, Y.1
Sette, A.2
Peters, B.3
-
68
-
-
42549105195
-
Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
-
DOI 10.1186/1471-2172-9-8
-
Lin H. H., Ray S., Tongchusak S., Reinherz E. L., Brusic V., Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunology 2008 9, article 8 2-s2.0-42549105195 10.1186/1471-2172-9-8 (Pubitemid 351583869)
-
(2008)
BMC Immunology
, vol.9
, pp. 8
-
-
Lin, H.H.1
Ray, S.2
Tongchusak, S.3
Reinherz, E.L.4
Brusic, V.5
-
69
-
-
48449106045
-
NetMHC-3.0: Accurate web accessible predictions of human, mouse and monkey MHC class i affinities for peptides of length 8-11
-
2-s2.0-48449106045 10.1093/nar/gkn202
-
Lundegaard C., Lamberth K., Harndahl M., Buus S., Lund O., Nielsen M., NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Research 2008 36 W509 512 2-s2.0-48449106045 10.1093/nar/gkn202
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Lundegaard, C.1
Lamberth, K.2
Harndahl, M.3
Buus, S.4
Lund, O.5
Nielsen, M.6
-
70
-
-
41949089739
-
Tandem duplication, circular permutation, molecular adaptation: How Solanaceae resist pests via inhibitors
-
DOI 10.1186/1471-2105-9-S1-S22
-
Lin H. H., Zhang G. L., Tongchusak S., Reinherz E. L., Brusic V., Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinformatics 2008 9 12 S22 2-s2.0-57649174707 10.1186/1471-2105-9-S1-S22 (Pubitemid 351911904)
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 1
-
-
Kong, L.1
Ranganathan, S.2
-
71
-
-
10744222046
-
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
-
DOI 10.1034/j.1399-0039.2003.00112.x
-
Buus S., Lauemøller S. L., Worning P., Kesmir C., Frimurer T., Corbet S., Fomsgaard A., Hilden J., Holm A., Brunak S., Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. Tissue Antigens 2003 62 5 378 384 2-s2.0-10744222046 10.1034/j.1399-0039.2003.00112.x (Pubitemid 37345160)
-
(2003)
Tissue Antigens
, vol.62
, Issue.5
, pp. 378-384
-
-
Buus, S.1
Lauemoller, S.L.2
Worning, P.3
Kesmir, C.4
Frimurer, T.5
Corbet, S.6
Fomsgaard, A.7
Hilden, J.8
Holm, A.9
Brunak, S.10
-
72
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
DOI 10.1110/ps.0239403
-
Nielsen M., Lundegaard C., Worning P., Lauemøller S. L., Lamberth K., Buus S., Brunak S., Lund O., Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Science 2003 12 5 1007 1017 2-s2.0-0037407113 10.1110/ps.0239403 (Pubitemid 36505435)
-
(2003)
Protein Science
, vol.12
, Issue.5
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemoller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
73
-
-
78149354807
-
NetMHCIIpan-2.0: Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
-
2-s2.0-78149354807 10.1186/1745-7580-6-9
-
Nielsen M., Justesen S., Lund O., Lundegaard C., Buus S., NetMHCIIpan-2.0: improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure. Immunome Research 2010 6 1, article 9 2-s2.0-78149354807 10.1186/1745-7580-6-9
-
(2010)
Immunome Research
, vol.6
, Issue.1
-
-
Nielsen, M.1
Justesen, S.2
Lund, O.3
Lundegaard, C.4
Buus, S.5
-
74
-
-
0036137241
-
ProPred: Prediction of HLA-DR binding sites
-
Singh H., Raghava G. P. S., ProPred: prediction of HLA-DR binding sites. Bioinformatics 2002 17 12 1236 1237 2-s2.0-0036137241 (Pubitemid 34041160)
-
(2002)
Bioinformatics
, vol.17
, Issue.12
, pp. 1236-1237
-
-
Singh, H.1
Raghava, G.P.S.2
-
75
-
-
4544336851
-
The ABCs of immunology: Structure and function of TAP, the transporter associated with antigen processing
-
Abele R., Tampé R., The ABCs of immunology: structure and function of TAP, the transporter associated with antigen processing. Physiology 2004 19 4 216 224 2-s2.0-4544336851 (Pubitemid 39481937)
-
(2004)
Physiology
, Issue.4
, pp. 216-224
-
-
Abele, R.1
Tampe, R.2
-
76
-
-
33751506565
-
Antigen Presentation and the Ubiquitin-Proteasome System in Host-Pathogen Interactions
-
DOI 10.1016/S0065-2776(06)92006-9, PII S0065277606920069
-
Loureiro J., Ploegh H. L., Antigen Presentation and the Ubiquitin-Proteasome System in Host-Pathogen Interactions. Advances in Immunology 2006 92 225 305 2-s2.0-33751506565 10.1016/S0065-2776(06)92006-9 (Pubitemid 44834531)
-
(2006)
Advances in Immunology
, vol.92
, pp. 225-305
-
-
Loureiro, J.1
Ploegh, H.L.2
-
77
-
-
38049169092
-
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
-
2-s2.0-38049169092 10.1186/1471-2105-8-424
-
Larsen M. V., Lundegaard C., Lamberth K., Buus S., Lund O., Nielsen M., Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics 2007 8, article 424 2-s2.0-38049169092 10.1186/1471-2105-8- 424
-
(2007)
BMC Bioinformatics
, vol.8424
-
-
Larsen, M.V.1
Lundegaard, C.2
Lamberth, K.3
Buus, S.4
Lund, O.5
Nielsen, M.6
-
78
-
-
17844385106
-
The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage
-
DOI 10.1007/s00251-005-0781-7
-
Nielsen M., Lundegaard C., Lund O., Keşmir C., The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage. Immunogenetics 2005 57 1-2 33 41 2-s2.0-17844385106 10.1007/s00251-005-0781-7 (Pubitemid 40591245)
-
(2005)
Immunogenetics
, vol.57
, Issue.1-2
, pp. 33-41
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
Kesmir, C.4
-
79
-
-
0345291184
-
A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome
-
DOI 10.1006/jmbi.1998.2530
-
Holzhütter H.-G., Frömmel C., Kloetzel P.-M., A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome. Journal of Molecular Biology 1999 286 4 1251 1265 2-s2.0-0345291184 10.1006/jmbi.1998.2530 (Pubitemid 29116689)
-
(1999)
Journal of Molecular Biology
, vol.286
, Issue.4
, pp. 1251-1265
-
-
Holzhutter, H.-G.1
Frommel, C.2
Kloetzel, P.-M.3
-
80
-
-
0033849945
-
A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates
-
2-s2.0-0033849945
-
Holzhütter H.-G., Kloetzel P.-M., A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates. Biophysical Journal 2000 79 3 1196 1205 2-s2.0-0033849945
-
(2000)
Biophysical Journal
, vol.79
, Issue.3
, pp. 1196-1205
-
-
Holzhütter, H.-G.1
Kloetzel, P.-M.2
-
81
-
-
2642555664
-
MAPPP: MHC class i antigenic peptide processing prediction
-
2-s2.0-2642555664
-
Hakenberg J., Nussbaum A. K., Schild H., Rammensee H.-G., Kuttler C., Holzhütter H.-G., Kloetzel P.-M., Kaufmann S. H. E., Mollenkopf H.-J., MAPPP: MHC class I antigenic peptide processing prediction. Applied Bioinformatics 2003 2 3 155 158 2-s2.0-2642555664
-
(2003)
Applied Bioinformatics
, vol.2
, Issue.3
, pp. 155-158
-
-
Hakenberg, J.1
Nussbaum, A.K.2
Schild, H.3
Rammensee, H.-G.4
Kuttler, C.5
Holzhütter, H.-G.6
Kloetzel, P.-M.7
Kaufmann, S.H.E.8
Mollenkopf, H.-J.9
-
82
-
-
77954559755
-
High throughput T epitope mapping and vaccine development
-
2-s2.0-77954559755 10.1155/2010/325720 325720
-
Li Pira G., Ivaldi F., Moretti P., Manca F., High throughput T epitope mapping and vaccine development. Journal of Biomedicine and Biotechnology 2010 2010 12 2-s2.0-77954559755 10.1155/2010/325720 325720
-
(2010)
Journal of Biomedicine and Biotechnology
, vol.2010
, pp. 12
-
-
Li Pira, G.1
Ivaldi, F.2
Moretti, P.3
Manca, F.4
-
83
-
-
0021020342
-
A solid-phase enzyme-linked immunospot (ELISPOT) assay for enumeration of specific antibody-secreting cells
-
Czerkinsky C. C., Nilsson L. A., Nygren H., A solid-phase enzyme-linked immunospot (ELISPOT) assay for enumeration of specific antibody-secreting cells. Journal of Immunological Methods 1983 65 1-2 109 121 2-s2.0-0021020342 (Pubitemid 14203438)
-
(1983)
Journal of Immunological Methods
, vol.65
, Issue.1-2
, pp. 109-121
-
-
Czerkinsky, C.C.1
Nilsson, L.A.2
Nygren, H.3
-
84
-
-
0030891988
-
Determination of antigen-specific memory/effector CD4+ T cell frequencies by flow cytometry. Evidence for a novel, antigen-specific homeostatic mechanism in HIV-associated immunodeficiency
-
Waldrop S. L., Pitcher C. J., Peterson D. M., Maino V. C., Picker L. J., Determination of antigen-specific memory/effector CD4+ T cell frequencies by flow cytometry. Evidence for a novel, antigen-specific homeostatic mechanism in HIV-associated immunodeficiency. Journal of Clinical Investigation 1997 99 7 1739 1750 2-s2.0-0030891988 (Pubitemid 27163826)
-
(1997)
Journal of Clinical Investigation
, vol.99
, Issue.7
, pp. 1739-1750
-
-
Waldrop, S.L.1
Pitcher, C.J.2
Peterson, D.M.3
Maino, V.C.4
Picker, L.J.5
-
85
-
-
55949113634
-
Tracking antigen-driven responses by flow cytometry: Monitoring proliferation by dye dilution
-
2-s2.0-55949113634 10.1002/cyto.a.20619
-
Wallace P. K., Tario J. D. Jr., Fisher J. L., Wallace S. S., Ernstoff M. S., Muirhead K. A., Tracking antigen-driven responses by flow cytometry: monitoring proliferation by dye dilution. Cytometry Part A 2008 73 11 1019 1034 2-s2.0-55949113634 10.1002/cyto.a.20619
-
(2008)
Cytometry Part A
, vol.73
, Issue.11
, pp. 1019-1034
-
-
Wallace, P.K.1
Tario Jr., J.D.2
Fisher, J.L.3
Wallace, S.S.4
Ernstoff, M.S.5
Muirhead, K.A.6
-
86
-
-
78149357976
-
A reductionist cell-free major histocompatibility complex class II antigen processing system identifies immunodominant epitopes
-
2-s2.0-78149357976 10.1038/nm.2248
-
Hartman I. Z., Kim A., Cotter R. J., Walter K., Dalai S. K., Boronina T., Griffith W., Lanar D. E., Schwenk R., Krzych U., Cole R. N., Sadegh-Nasseri S., A reductionist cell-free major histocompatibility complex class II antigen processing system identifies immunodominant epitopes. Nature Medicine 2010 16 11 1333 1340 2-s2.0-78149357976 10.1038/nm.2248
-
(2010)
Nature Medicine
, vol.16
, Issue.11
, pp. 1333-1340
-
-
Hartman, I.Z.1
Kim, A.2
Cotter, R.J.3
Walter, K.4
Dalai, S.K.5
Boronina, T.6
Griffith, W.7
Lanar, D.E.8
Schwenk, R.9
Krzych, U.10
Cole, R.N.11
Sadegh-Nasseri, S.12
-
87
-
-
84867046534
-
A comparison of two methods for T cell epitope mapping: "cell free" in vitro versus immunoinformatics
-
Messitt T. J., Terry F., Moise L., Martin W., De Groot A. S., A comparison of two methods for T cell epitope mapping: "cell free" in vitro versus immunoinformatics. Immunome Research 2011 7 2, article 6
-
(2011)
Immunome Research
, vol.7
, Issue.2
-
-
Messitt, T.J.1
Terry, F.2
Moise, L.3
Martin, W.4
De Groot, A.S.5
-
88
-
-
84876926521
-
Characterization of epitopes recognized by monoclonal antibodies: Experimental approaches supported by freely accessible bioinformatic tools
-
Clementi N., Mancini N., Castelli M., Clementi M., Burioni R., Characterization of epitopes recognized by monoclonal antibodies: experimental approaches supported by freely accessible bioinformatic tools. Drug Discovery Today 2013 18 9-10 464 471
-
(2013)
Drug Discovery Today
, vol.18
, Issue.9-10
, pp. 464-471
-
-
Clementi, N.1
Mancini, N.2
Castelli, M.3
Clementi, M.4
Burioni, R.5
-
89
-
-
84872116415
-
Rapid conformational epitope mapping of anti-gp120 antibodies with a designed mutant panel displayed on yeast
-
Mata-Fink J., Kriegsman B., Yu H. X., Zhu H., Hanson M. C., Irvine D. J., Wittrup K. D., Rapid conformational epitope mapping of anti-gp120 antibodies with a designed mutant panel displayed on yeast. Journal of Molecular Biology 2013 425 2 444 456
-
(2013)
Journal of Molecular Biology
, vol.425
, Issue.2
, pp. 444-456
-
-
Mata-Fink, J.1
Kriegsman, B.2
Yu, H.X.3
Zhu, H.4
Hanson, M.C.5
Irvine, D.J.6
Wittrup, K.D.7
-
90
-
-
84872802923
-
Fine level epitope mapping and conservation analysis of two novel linear B-cell epitopes of the avian infectious bronchitis coronavirus nucleocapsid protein
-
Han Z., Zhao F., Shao Y., Liu X., Kong X., Song Y., Liu S., Fine level epitope mapping and conservation analysis of two novel linear B-cell epitopes of the avian infectious bronchitis coronavirus nucleocapsid protein. Virus Research 2013 171 1 54 64
-
(2013)
Virus Research
, vol.171
, Issue.1
, pp. 54-64
-
-
Han, Z.1
Zhao, F.2
Shao, Y.3
Liu, X.4
Kong, X.5
Song, Y.6
Liu, S.7
-
91
-
-
84874551743
-
Multiplex epitope mapping using bacterial surface display reveals both linear and conformational epitopes
-
Hudson E. P., Uhlen M., Rockberg J., Multiplex epitope mapping using bacterial surface display reveals both linear and conformational epitopes. Science Reports 2012 2, article 706
-
(2012)
Science Reports
, vol.2706
-
-
Hudson, E.P.1
Uhlen, M.2
Rockberg, J.3
-
92
-
-
84866497183
-
Epitope mapping by random peptide phage display reveals essential residues for vaccinia extracellular enveloped virion spread
-
He Y., Wang Y., Struble E. B., Zhang P., Chowdhury S., Reed J. L., Kennedy M., Scott D. E., Fisher R. W., Epitope mapping by random peptide phage display reveals essential residues for vaccinia extracellular enveloped virion spread. Virology Journal 2012 9, article 217
-
(2012)
Virology Journal
, vol.9217
-
-
He, Y.1
Wang, Y.2
Struble, E.B.3
Zhang, P.4
Chowdhury, S.5
Reed, J.L.6
Kennedy, M.7
Scott, D.E.8
Fisher, R.W.9
-
93
-
-
84870588311
-
Influenza B-cells protective epitope characterization: A passkey for the rational design of new broad-range anti-influenza vaccines
-
Clementi N., Criscuolo E., Castelli M., Mancini N., Clementi M., Burioni R., Influenza B-cells protective epitope characterization: a passkey for the rational design of new broad-range anti-influenza vaccines. Viruses 2012 4 11 3090 3108
-
(2012)
Viruses
, vol.4
, Issue.11
, pp. 3090-3108
-
-
Clementi, N.1
Criscuolo, E.2
Castelli, M.3
Mancini, N.4
Clementi, M.5
Burioni, R.6
-
94
-
-
82955194795
-
A human monoclonal antibody with neutralizing activity against highly divergent influenza subtypes
-
2-s2.0-82955194795 10.1371/journal.pone.0028001 e28001
-
Clementi N., de Marco D., Mancini N., Solforosi L., Moreno G. J., Gubareva L. V., Mishin V., Di Pietro A., Vicenzi E., Siccardi A. G., Clementi M., Burioni R., A human monoclonal antibody with neutralizing activity against highly divergent influenza subtypes. PLoS ONE 2011 6 12 2-s2.0-82955194795 10.1371/journal.pone.0028001 e28001
-
(2011)
PLoS ONE
, vol.6
, Issue.12
-
-
Clementi, N.1
De Marco, D.2
Mancini, N.3
Solforosi, L.4
Moreno, G.J.5
Gubareva, L.V.6
Mishin, V.7
Di Pietro, A.8
Vicenzi, E.9
Siccardi, A.G.10
Clementi, M.11
Burioni, R.12
-
95
-
-
74249110309
-
Molecular cloning of the first human monoclona antibodies neutralizing with high potency Swine-origin Influenza A pandemic virus (S-OIV)
-
2-s2.0-74249110309
-
Burioni R., Canducci F., Mancini N., Clementi N., Sassi M., De Marco D., Saita D., Diotti R. A., Sautto G., Sampaolo M., Clementi M., Molecular cloning of the first human monoclona antibodies neutralizing with high potency Swine-origin Influenza A pandemic virus (S-OIV). New Microbiologica 2009 32 4 319 324 2-s2.0-74249110309
-
(2009)
New Microbiologica
, vol.32
, Issue.4
, pp. 319-324
-
-
Burioni, R.1
Canducci, F.2
Mancini, N.3
Clementi, N.4
Sassi, M.5
De Marco, D.6
Saita, D.7
Diotti, R.A.8
Sautto, G.9
Sampaolo, M.10
Clementi, M.11
-
96
-
-
77049088439
-
Monoclonal antibodies isolated from human B cells neutralize a broad range of H1 subtype influenza A viruses including swine-origin Influenza virus (S-OIV)
-
2-s2.0-77049088439 10.1016/j.virol.2009.12.014
-
Burioni R., Canducci F., Mancini N., Clementi N., Sassi M., De Marco D., Diotti R. A., Saita D., Sampaolo M., Sautto G., Pianezze M., Clementi M., Monoclonal antibodies isolated from human B cells neutralize a broad range of H1 subtype influenza A viruses including swine-origin Influenza virus (S-OIV). Virology 2010 399 1 144 152 2-s2.0-77049088439 10.1016/j.virol.2009.12.014
-
(2010)
Virology
, vol.399
, Issue.1
, pp. 144-152
-
-
Burioni, R.1
Canducci, F.2
Mancini, N.3
Clementi, N.4
Sassi, M.5
De Marco, D.6
Diotti, R.A.7
Saita, D.8
Sampaolo, M.9
Sautto, G.10
Pianezze, M.11
Clementi, M.12
-
97
-
-
33947265265
-
CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening
-
DOI 10.1016/j.vaccine.2006.12.038, PII S0264410X06013533
-
Wang M., Lamberth K., Harndahl M., Røder G., Stryhn A., Larsen M. V., Nielsen M., Lundegaard C., Tang S. T., Dziegiel M. H., Rosenkvist J., Pedersen A. E., Buus S., Claesson M. H., Lund O., CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening. Vaccine 2007 25 15 2823 2831 2-s2.0-33947265265 10.1016/j.vaccine.2006.12.038 (Pubitemid 46420615)
-
(2007)
Vaccine
, vol.25
, Issue.15
, pp. 2823-2831
-
-
Wang, M.1
Lamberth, K.2
Harndahl, M.3
Roder, G.4
Stryhn, A.5
Larsen, M.V.6
Nielsen, M.7
Lundegaard, C.8
Tang, S.T.9
Dziegiel, M.H.10
Rosenkvist, J.11
Pedersen, A.E.12
Buus, S.13
Claesson, M.H.14
Lund, O.15
-
98
-
-
77956396636
-
HLA class i binding 9mer peptides from influenza A virus induce CD4 T cell responses
-
e10533 2-s2.0-77956282809 10.1371/journal.pone.0010533
-
Wang M., Larsen M. V., Nielsen M., Harndahl M., Justesen S., Dziegiel M. H., Buus S., Tang S. T., Lund O., Claesson M. H., HLA class I binding 9mer peptides from influenza A virus induce CD4 T cell responses. PloS one 2010 5 5 e10533 2-s2.0-77956282809 10.1371/journal.pone.0010533
-
(2010)
PloS One
, vol.5
, Issue.5
-
-
Wang, M.1
Larsen, M.V.2
Nielsen, M.3
Harndahl, M.4
Justesen, S.5
Dziegiel, M.H.6
Buus, S.7
Tang, S.T.8
Lund, O.9
Claesson, M.H.10
-
99
-
-
77949524792
-
Identification and structural definition of H5-specific CTL epitopes restricted by HLA-A0201 derived from the H5N1 subtype of influenza A viruses
-
2-s2.0-77949524792 10.1099/vir.0.016766-0
-
Sun Y., Liu J., Yang M., Gao F., Zhou J., Kitamura Y., Gao B., Tien P., Shu Y., Iwamoto A., Chen Z., Gao G. F., Identification and structural definition of H5-specific CTL epitopes restricted by HLA-A0201 derived from the H5N1 subtype of influenza A viruses. Journal of General Virology 2010 91 4 919 930 2-s2.0-77949524792 10.1099/vir.0.016766-0
-
(2010)
Journal of General Virology
, vol.91
, Issue.4
, pp. 919-930
-
-
Sun, Y.1
Liu, J.2
Yang, M.3
Gao, F.4
Zhou, J.5
Kitamura, Y.6
Gao, B.7
Tien, P.8
Shu, Y.9
Iwamoto, A.10
Chen, Z.11
Gao, G.F.12
-
100
-
-
77954484969
-
Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity
-
2-s2.0-77954484969 10.4049/jimmunol.0903516
-
Hoof I., Pérez C. L., Buggert M., Gustafsson R. K. L., Nielsen M., Lund O., Karlsson A. C., Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity. Journal of Immunology 2010 184 9 5383 5391 2-s2.0-77954484969 10.4049/jimmunol.0903516
-
(2010)
Journal of Immunology
, vol.184
, Issue.9
, pp. 5383-5391
-
-
Hoof, I.1
Pérez, C.L.2
Buggert, M.3
Gustafsson, R.K.L.4
Nielsen, M.5
Lund, O.6
Karlsson, A.C.7
-
101
-
-
84860439471
-
Clusters versus affinity-based approaches in F. tularensis whole genome search of CTL epitopes
-
2-s2.0-84860439471 10.1371/journal.pone.0036440 e36440
-
Zvi A., Rotem S., Cohen O., Shafferman A., Clusters versus affinity-based approaches in F. tularensis whole genome search of CTL epitopes. PLoS ONE 2012 7 5 2-s2.0-84860439471 10.1371/journal.pone.0036440 e36440
-
(2012)
PLoS ONE
, vol.7
, Issue.5
-
-
Zvi, A.1
Rotem, S.2
Cohen, O.3
Shafferman, A.4
-
102
-
-
80051788145
-
Identification of novel T cell epitopes from efflux pumps of Mycobacterium tuberculosis
-
2-s2.0-80051788145 10.1016/j.imlet.2011.06.009
-
Zhu Y.-H., Gao Y.-F., Chen F., Liu W., Zhai M.-X., Zhai W.-J., Qi Y.-M., Ye Y., Identification of novel T cell epitopes from efflux pumps of Mycobacterium tuberculosis. Immunology Letters 2011 140 1-2 68 73 2-s2.0-80051788145 10.1016/j.imlet.2011.06.009
-
(2011)
Immunology Letters
, vol.140
, Issue.1-2
, pp. 68-73
-
-
Zhu, Y.-H.1
Gao, Y.-F.2
Chen, F.3
Liu, W.4
Zhai, M.-X.5
Zhai, W.-J.6
Qi, Y.-M.7
Ye, Y.8
-
103
-
-
80053454940
-
In silico analysis of six known leishmania major antigens and in vitro evaluation of specific epitopes eliciting HLA-A2 restricted CD8 T cell response
-
2-s2.0-80053454940 10.1371/journal.pntd.0001295 e1295
-
Seyed N., Zahedifard F., Safaiyan S., Gholami E., Doustdari F., Azadmanesh K., Mirzaei M., Eslami N., Sadegh A. K., Eslami far A., Sharifi I., Rafati S., In silico analysis of six known leishmania major antigens and in vitro evaluation of specific epitopes eliciting HLA-A2 restricted CD8 T cell response. PLoS Neglected Tropical Diseases 2011 5 9 2-s2.0-80053454940 10.1371/journal.pntd.0001295 e1295
-
(2011)
PLoS Neglected Tropical Diseases
, vol.5
, Issue.9
-
-
Seyed, N.1
Zahedifard, F.2
Safaiyan, S.3
Gholami, E.4
Doustdari, F.5
Azadmanesh, K.6
Mirzaei, M.7
Eslami, N.8
Sadegh, A.K.9
Eslami Far, A.10
Sharifi, I.11
Rafati, S.12
-
104
-
-
79960616674
-
Identification of a human immunodominant T-cell epitope of mycobacterium tuberculosis antigen PPE44
-
2-s2.0-79960616674 10.1186/1471-2180-11-167
-
Cuccu B., Freer G., Genovesi A., Garzelli C., Rindi L., Identification of a human immunodominant T-cell epitope of mycobacterium tuberculosis antigen PPE44. BMC Microbiology 2011 11, article 167 2-s2.0-79960616674 10.1186/1471-2180-11-167
-
(2011)
BMC Microbiology
, pp. 11167
-
-
Cuccu, B.1
Freer, G.2
Genovesi, A.3
Garzelli, C.4
Rindi, L.5
|