-
1
-
-
33748953868
-
Peptides mediating interaction networks: new leads at last
-
Neduva V, Russell RB. Peptides mediating interaction networks: new leads at last. Current Opinion in Biotechnol 2006, 17(5):465-71.
-
(2006)
Current Opinion in Biotechnol
, vol.17
, Issue.5
, pp. 465-471
-
-
Neduva, V.1
Russell, R.B.2
-
2
-
-
41149120313
-
SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins
-
10.1371/journal.pone.0000967, 1989135, 17912346
-
Edwards RJ, Davey NE, Shields DC. SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins. PloS one 2007, 2(10):e967. 10.1371/journal.pone.0000967, 1989135, 17912346.
-
(2007)
PloS one
, vol.2
, Issue.10
-
-
Edwards, R.J.1
Davey, N.E.2
Shields, D.C.3
-
3
-
-
29144455315
-
Systematic discovery of new recognition peptides mediating protein interaction networks
-
10.1371/journal.pbio.0030405, 1283537, 16279839
-
Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB. Systematic discovery of new recognition peptides mediating protein interaction networks. PLoS Biology 2005, 3(12):e405. 10.1371/journal.pbio.0030405, 1283537, 16279839.
-
(2005)
PLoS Biology
, vol.3
, Issue.12
-
-
Neduva, V.1
Linding, R.2
Su-Angrand, I.3
Stark, A.4
de Masi, F.5
Gibson, T.J.6
Lewis, J.7
Serrano, L.8
Russell, R.B.9
-
4
-
-
84859051901
-
ELM-the database of eukaryotic linear motifs
-
Database issue, 3245074, 22110040
-
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van R, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. ELM-the database of eukaryotic linear motifs. Nucleic Acids Res 2012, 40(Database issue):D242-D251. 3245074, 22110040.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Dinkel, H.1
Michael, S.2
Weatheritt, R.J.3
Davey, N.E.4
Van, R.5
Altenberg, B.6
Toedt, G.7
Uyar, B.8
Seiler, M.9
Budd, A.10
Jödicke, L.11
Dammert, M.A.12
Schroeter, C.13
Hammer, M.14
Schmidt, T.15
Jehl, P.16
McGuigan, C.17
Dymecka, M.18
Chica, C.19
Luck, K.20
Via, A.21
Chatr-Aryamontri, A.22
Haslam, N.23
Grebnev, G.24
Edwards, R.J.25
Steinmetz, M.O.26
Meiselbach, H.27
Diella, F.28
Gibson, T.J.29
more..
-
5
-
-
79959984707
-
SLiMSearch 2.0: biological context for short linear motifs in proteins
-
Web Server issue, 3125787, 21622654
-
Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMSearch 2.0: biological context for short linear motifs in proteins. Nucleic Acids Res 2011, 39(Web Server issue):W56-W60. 3125787, 21622654.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Davey, N.E.1
Haslam, N.J.2
Shields, D.C.3
Edwards, R.J.4
-
6
-
-
84870600202
-
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
-
10.1093/nar/gks854, 3510515, 22977176
-
Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ. SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions. Nucleic Acids Res 2012, 40(21):10628-10641. 10.1093/nar/gks854, 3510515, 22977176.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.21
, pp. 10628-10641
-
-
Davey, N.E.1
Cowan, J.L.2
Shields, D.C.3
Gibson, T.J.4
Coldwell, M.J.5
Edwards, R.J.6
-
7
-
-
84864419151
-
PepSite: prediction of peptide-binding sites from protein surfaces
-
Web Server issue, 3394340, 22600738
-
Trabuco LG, Lise S, Petsalaki E, Russell RB. PepSite: prediction of peptide-binding sites from protein surfaces. Nucleic acids research 2012, 40(Web Server issue):W423-W427. 3394340, 22600738.
-
(2012)
Nucleic acids research
, vol.40
-
-
Trabuco, L.G.1
Lise, S.2
Petsalaki, E.3
Russell, R.B.4
-
8
-
-
84888391750
-
Prediction of Short Linear Protein Binding Regions
-
Shields D C
-
Mooney C, Pollastri G, Haslam NJ, Shields D C Prediction of Short Linear Protein Binding Regions. J Mol Biol 2011, Shields D C.
-
(2011)
J Mol Biol
-
-
Mooney, C.1
Pollastri, G.2
Haslam, N.J.3
-
9
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
10.1101/gr.1239303, 403769, 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13(11):2498-2504. 10.1101/gr.1239303, 403769, 14597658.
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
10
-
-
52949117758
-
Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference
-
Morcos F, Lamanna C, Sikora M, Izaguirre J. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. Bioinformatics (Oxford, England) 2008, 24(19):2265-2266.
-
(2008)
Bioinformatics (Oxford, England)
, vol.24
, Issue.19
, pp. 2265-2266
-
-
Morcos, F.1
Lamanna, C.2
Sikora, M.3
Izaguirre, J.4
-
11
-
-
84862221167
-
SMART 7: recent updates to the protein domain annotation resource
-
Database issue, 3245027, 22053084
-
Letunic I, Doerks T, Bork P. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 2012, 40(Database issue):D302-D305. 3245027, 22053084.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
12
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
Database issue, 3245120, 22102590, The UniProt Consortium
-
The UniProt Consortium Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 2012, 40(Database issue):D71-D75. 3245120, 22102590, The UniProt Consortium.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
-
13
-
-
4143095783
-
Public services from the European Bioinformatics Institute
-
10.1093/bib/4.4.332, 14725346
-
Lopez R, Duggan K, Harte N, Kibria A. Public services from the European Bioinformatics Institute. Briefings in bioinformatics 2003, 4(4):332-340. 10.1093/bib/4.4.332, 14725346.
-
(2003)
Briefings in bioinformatics
, vol.4
, Issue.4
, pp. 332-340
-
-
Lopez, R.1
Duggan, K.2
Harte, N.3
Kibria, A.4
-
14
-
-
82655175473
-
Interactome-wide prediction of short, disordered protein interaction motifs in humans
-
Edwards RJ, Davey NE, O'Brien K, Shields DC. Interactome-wide prediction of short, disordered protein interaction motifs in humans. Mol bioSystems 2012, 8:282-295.
-
(2012)
Mol bioSystems
, vol.8
, pp. 282-295
-
-
Edwards, R.J.1
Davey, N.E.2
O'Brien, K.3
Shields, D.C.4
|