-
1
-
-
34948892908
-
Bioinformatics processing of protein and transcript profiles of normal and transformed cell lines indicates functional impairment of transcriptional regulators in buccal carcinoma
-
DOI 10.1021/pr070308q
-
Staab CA, Ceder R, Jägerbrink T, Nilsson JA, Roberg K, Jörnvall H, Höög JO, Grafström RC: Bioinformatics processing of protein and transcript profiles of normal and transformed cell lines indicates functional impairment of transcriptional regulators in Buccal Carcinoma. J Proteome Res 2007, 6(9):3705-3717. (Pubitemid 47522759)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.9
, pp. 3705-3717
-
-
Staab, C.A.1
Ceder, R.2
Jagerbrink, T.3
Nilsson, J.-A.4
Roberg, K.5
Jornvall, H.6
Hoog, J.-O.7
Grafstrom, R.C.8
-
2
-
-
48249158190
-
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
-
Belleau F, Nolin MA, Tourigny N, Rigault P, Morissette J: Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Inform 2008, 41(5):706-716.
-
(2008)
J Biomed Inform
, vol.41
, Issue.5
, pp. 706-716
-
-
Belleau, F.1
Nolin, M.A.2
Tourigny, N.3
Rigault, P.4
Morissette, J.5
-
3
-
-
80053448367
-
Linked open drug data for pharmaceutical research and development
-
Samwald M, Jentzsch A, Bouton C, Kallesoe C, Willighagen E, Hajagos J, Marshall S, Prud'hommeaux E, Hassanzadeh O, Pichler E, Stephens S: Linked open drug data for pharmaceutical research and development. J Cheminformatics 2011, 3:19.
-
(2011)
J Cheminformatics
, vol.3
, pp. 19
-
-
Samwald, M.1
Jentzsch, A.2
Bouton, C.3
Kallesoe, C.4
Willighagen, E.5
Hajagos, J.6
Marshall, S.7
Prud'hommeaux, E.8
Hassanzadeh, O.9
Pichler, E.10
Stephens, S.11
-
4
-
-
84868138829
-
Open PHACTS: Semantic interoperability for drug discovery
-
21-22
-
Williams AJ, Harland L, Groth P, Pettifer S, Chichester C, Willighagen EL, Evelo CT, Blomberg N, Ecker G, Goble C, Mons B: Open PHACTS: semantic interoperability for drug discovery. Drug Discov Today 2012, 17 (21-22).
-
(2012)
Drug Discov Today
, pp. 17
-
-
Williams, A.J.1
Harland, L.2
Groth, P.3
Pettifer, S.4
Chichester, C.5
Willighagen, E.L.6
Evelo, C.T.7
Blomberg, N.8
Ecker, G.9
Goble, C.10
Mons, B.11
-
5
-
-
84862192766
-
ChEMBL: A large-scale bioactivity database for drug discovery
-
Gaulton A, Bellis L, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington J: ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res 2012, 40(D1):D1100-D1107.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.D1
-
-
Gaulton, A.1
Bellis, L.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.11
-
6
-
-
61749093196
-
ChEMBL. An interview with John Overington, team leader, chemogenomics at the European Bioinformatics institute outstation of the European molecular biology laboratory (EMBL-EBI). Interview by Wendy A. Warr
-
Warr WA: ChEMBL. An interview with John Overington, team leader, chemogenomics at the European Bioinformatics institute outstation of the European molecular biology laboratory (EMBL-EBI). Interview by Wendy A. Warr. J Comput Aided Mol Des 2009, 23(4):195-198.
-
(2009)
J Comput Aided Mol Des
, vol.23
, Issue.4
, pp. 195-198
-
-
Warr, W.A.1
-
7
-
-
77953907294
-
Chem2Bio2RDF: A semantic framework for linking and data mining chemogenomic and systems chemical biology data
-
Chen B, Dong X, Jiao D, Wang H, Zhu Q, Ding Y, Wild D: Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. BMC Bioinformatics 2010, 11:255.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 255
-
-
Chen, B.1
Dong, X.2
Jiao, D.3
Wang, H.4
Zhu, Q.5
Ding, Y.6
Wild, D.7
-
8
-
-
84879984716
-
Linking the resource description framework to cheminformatics and proteochemometrics
-
Willighagen E, Alvarsson J, Andersson A, Eklund M, Lampa S, Lapins M, Spjuth O, Wikberg J: Linking the resource description framework to cheminformatics and proteochemometrics. J Biomed Semantics 2011, 2(Suppl 1):S6.
-
(2011)
J Biomed Semantics
, vol.2
, Issue.SUPPL. 1
-
-
Willighagen, E.1
Alvarsson, J.2
Andersson, A.3
Eklund, M.4
Lampa, S.5
Lapins, M.6
Spjuth, O.7
Wikberg, J.8
-
12
-
-
84862009031
-
Emerging practices for mapping and linking life sciences data using RDF - A case series
-
Marshall MS, Boyce R, Deus HF, Zhao J, Willighagen EL, Samwald M, Pichler E, Hajagos J, Prud'hommeaux E, Stephens S: Emerging practices for mapping and linking life sciences data using RDF - A case series. Web Semantics: Sci, Serv Agents World Wide Web 2012, 14:2-13.
-
(2012)
Web Semantics: Sci, Serv Agents World Wide Web
, vol.14
, pp. 2-13
-
-
Marshall, M.S.1
Boyce, R.2
Deus, H.F.3
Zhao, J.4
Willighagen, E.L.5
Samwald, M.6
Pichler, E.7
Hajagos, J.8
Prud'hommeaux, E.9
Stephens, S.10
-
14
-
-
79958285452
-
CiTO, the citation typing ontology
-
Shotton D: CiTO, the Citation Typing Ontology. J Biomed Semantics 2010, 1(Suppl 1):S6.
-
(2010)
J Biomed Semantics
, vol.1
, Issue.SUPPL. 1
-
-
Shotton, D.1
-
15
-
-
78651286167
-
The Protein Ontology: A structured representation of protein forms and complexes
-
Natale DA, Arighi CN, Barker WC, Blake JA, Bult CJ, Caudy M, Drabkin HJ, D'Eustachio P, Evsikov AV, Huang H, Nchoutmboube J, Roberts NV, Smith B, Zhang J, Wu CH: The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Res 2011, 39(suppl 1):D539-D545.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.SUPPL. 1
-
-
Natale, D.A.1
Arighi, C.N.2
Barker, W.C.3
Blake, J.A.4
Bult, C.J.5
Caudy, M.6
Drabkin, H.J.7
D'Eustachio, P.8
Evsikov, A.V.9
Huang, H.10
Nchoutmboube, J.11
Roberts, N.V.12
Smith, B.13
Zhang, J.14
Wu, C.H.15
-
16
-
-
80053450964
-
The chemical information ontology: Provenance and disambiguation for chemical data on the biological semantic web
-
Hastings J, Chepelev L, Willighagen E, Adams N, Steinbeck C, Dumontier M: The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. PLoSONE 2011, 6(10):e25513.
-
(2011)
PLoSONE
, vol.6
, Issue.10
-
-
Hastings, J.1
Chepelev, L.2
Willighagen, E.3
Adams, N.4
Steinbeck, C.5
Dumontier, M.6
-
17
-
-
84876560358
-
The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013
-
Hastings J, De Matos P, Dekker A, Ennis M, Harsha B, Kale N, Muthukrishnan V, Owen G, Turner S, Williams M, Steinbeck C: The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res 2013, 41(D1):D456-D463.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
-
-
Hastings, J.1
De Matos, P.2
Dekker, A.3
Ennis, M.4
Harsha, B.5
Kale, N.6
Muthukrishnan, V.7
Owen, G.8
Turner, S.9
Williams, M.10
Steinbeck, C.11
-
18
-
-
33646235033
-
The cornucopia of formal-ontological relations
-
Smith B, Grenon P: The cornucopia of formal-ontological relations. Dialectica 2004, 58(3):279-296.
-
(2004)
Dialectica
, vol.58
, Issue.3
, pp. 279-296
-
-
Smith, B.1
Grenon, P.2
-
19
-
-
84880081630
-
-
OpenLink Software: Virtuoso Open-Source Edition. 2012. [http://virtuoso.openlinksw.com/dataspace/dav/wiki/Main/]
-
(2012)
Virtuoso Open-source Edition.
-
-
-
20
-
-
84880050118
-
-
Talis: Kasabi. 2012. [http://www.kasabi.com/]
-
(2012)
Kasabi.
-
-
-
22
-
-
79959471969
-
BioAssay Ontology (BAO): A semantic description of bioassays and high-throughput screening results
-
Visser U, Abeyruwan S, Vempati U, Smith R, Lemmon V, Schurer S: BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results. BMC Bioinformatics 2011, 12:257.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 257
-
-
Visser, U.1
Abeyruwan, S.2
Vempati, U.3
Smith, R.4
Lemmon, V.5
Schurer, S.6
-
23
-
-
84880074742
-
ChEMBL database version 13 release notes
-
ChEMBL database version 13 release notes. Tech. rep. [http://ftp.ebi.ac. uk/pub/databases/chembl/ChEMBLdb/releases/chembl-13/chembl-13-release-notes.txt]
-
Tech. Rep.
-
-
-
24
-
-
78449296488
-
ChemSpider: An online chemical information Resource
-
Pence H, Williams A: ChemSpider: An online chemical information Resource. JChemEduc 2010, 87(11):1123-1124.
-
(2010)
JChemEduc
, vol.87
, Issue.11
, pp. 1123-1124
-
-
Pence, H.1
Williams, A.2
-
25
-
-
84862651574
-
-
Sebastopol, US: O'Reilly Media, Inc;, chap. 16
-
Bradley JC, Guha R, Lang A, Lindenbaum P, Neylon C, Williams A, Willighagen EL: Beautifying Data in the Real World. Sebastopol, US: O'Reilly Media, Inc; 2009 chap. 16 [http://precedings.nature.com/documents/4918/version/ 1]
-
(2009)
Beautifying Data in the Real World
-
-
Bradley, J.C.1
Guha, R.2
Lang, A.3
Lindenbaum, P.4
Neylon, C.5
Williams, A.6
Willighagen, E.L.7
-
26
-
-
75849153303
-
The Universal Protein resource (UniProt) in 2010
-
UniProt Consortium
-
The UniProt Consortium: The Universal Protein resource (UniProt) in 2010. Nucleic Acids Res 2010, 38(suppl 1):D142-D148.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL. 1
-
-
-
28
-
-
78649271688
-
Model and prototype for querying multiple linked scientific datasets
-
Ansell P: Model and prototype for querying multiple linked scientific datasets. Future Generation ComputSyst 2011, 27(3):329-333.
-
(2011)
Future Generation ComputSyst
, vol.27
, Issue.3
, pp. 329-333
-
-
Ansell, P.1
-
29
-
-
80052841737
-
A quality alert and call for improved curation of public chemistry databases
-
Williams A, Ekins S: A quality alert and call for improved curation of public chemistry databases. Drug DiscovToday 2011, 16(17-18):747-750.
-
(2011)
Drug DiscovToday
, vol.16
, Issue.17-18
, pp. 747-750
-
-
Williams, A.1
Ekins, S.2
-
30
-
-
84880075170
-
-
ChEMBL WebApp. [Https://github.com/ansell/chembl-webapp]
-
ChEMBL WebApp.
-
-
-
31
-
-
84862637212
-
Improving integrative searching of systems chemical biology data using semantic annotation
-
Chen B, Ding Y, Wild D: Improving integrative searching of systems chemical biology data using semantic annotation. J Cheminformatics 2012, 4:6.
-
(2012)
J Cheminformatics
, vol.4
, pp. 6
-
-
Chen, B.1
Ding, Y.2
Wild, D.3
-
32
-
-
84864614370
-
Assessing drug target association using semantic linked data
-
Chen B, Ding Y, Wild D, J: Assessing drug target association using semantic linked data. PLoS Comput Biol 2012, 8(7):e1002574.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.7
-
-
Chen, B.1
Ding, Y.2
Wild, D.J.3
-
33
-
-
33644865034
-
Serotonin transporter mechanisms and cardiac disease
-
DOI 10.1161/CIRCULATIONAHA.105.593459, PII 0000301720060103000002
-
Levy RJ: Serotonin transporter mechanisms and cardiac disease. Circulation 2006, 113:2-4. (Pubitemid 43958480)
-
(2006)
Circulation
, vol.113
, Issue.1
, pp. 2-4
-
-
Levy, R.J.1
-
34
-
-
84880071866
-
Measuring impact in online resources with the CI number (the Cited in Number for Online Impact)
-
Waagmeester A, Evelo C: Measuring impact in online resources with the CInumber (the Cited In number for online impact). 2011. Available from Nature Precedings [http://dx.doi.org/10.1038/npre.2011.6037.1]
-
(2011)
Nature Precedings
-
-
Waagmeester, A.1
Evelo, C.2
-
35
-
-
84880073355
-
-
CitedIn Resources. [http://citedin.org/included-resources.php]
-
CitedIn Resources.
-
-
-
36
-
-
77952704258
-
Thousands of chemical starting points for antimalarial lead identification
-
Gamo FJ, Sanz LM, Vidal J, De Cozar C, Alvarez E, Lavandera JL, Vanderwall DE, Green D V S, Kumar V, Hasan S, Brown JR, Peishoff CE, Cardon LR, Garcia-Bustos JF: Thousands of chemical starting points for antimalarial lead identification. Nature 2010, 465(7296):305-310.
-
(2010)
Nature
, vol.465
, Issue.7296
, pp. 305-310
-
-
Gamo, F.J.1
Sanz, L.M.2
Vidal, J.3
De Cozar, C.4
Alvarez, E.5
Lavandera, J.L.6
Vanderwall, D.E.7
Green, D.V.S.8
Kumar, V.9
Hasan, S.10
Brown, J.R.11
Peishoff, C.E.12
Cardon, L.R.13
Garcia-Bustos, J.F.14
-
37
-
-
80755142997
-
Computational toxicology using the OpenTox application programming interface and Bioclipse
-
Willighagen EL, Jeliazkova N, Hardy B, Grafström RC, Spjuth O: Computational toxicology using the OpenTox application programming interface and Bioclipse. BMC Res Notes 2011, 4:487.
-
(2011)
BMC Res Notes
, vol.4
, pp. 487
-
-
Willighagen, E.L.1
Jeliazkova, N.2
Hardy, B.3
Grafström, R.C.4
Spjuth, O.5
-
38
-
-
80051962255
-
Integrated decision support for assessing chemical liabilities
-
Spjuth O, Eklund M, Ahlberg Helgee E, Boyer S, Carlsson L: Integrated decision support for assessing chemical liabilities. J Chem Inf Model 2011, 51(8):1840-7.
-
(2011)
J Chem Inf Model
, vol.51
, Issue.8
, pp. 1840-1847
-
-
Spjuth, O.1
Eklund, M.2
Ahlberg Helgee, E.3
Boyer, S.4
Carlsson, L.5
-
39
-
-
77349123063
-
The BridgeDb framework: Standardized access to gene, protein and metabolite identifier mapping services
-
Van Lersel, M, Pico A, KelderT, Gao J, Ho I, Hanspers K, Conklin B, Evelo C: The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinformatics 2010, 11:5.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 5
-
-
Van Lersel, M.1
Pico, A.2
Kelder, T.3
Gao, J.4
Ho, I.5
Hanspers, K.6
Conklin, B.7
Evelo, C.8
|