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Volumn 8, Issue 1, 2013, Pages

Analyzing huge pathology images with open source software

Author keywords

Digital pathology; Image processing; ImageJ; NDPI; Systems biology; Virtual slides

Indexed keywords

ARTICLE; COMPARATIVE STUDY; COMPUTER ASSISTED DIAGNOSIS; COMPUTER INTERFACE; COMPUTER PROGRAM; HUMAN; METHODOLOGY; MICROSCOPY; PATHOLOGY; PREDICTIVE VALUE;

EID: 84880023523     PISSN: None     EISSN: 17461596     Source Type: Journal    
DOI: 10.1186/1746-1596-8-92     Document Type: Article
Times cited : (81)

References (34)
  • 3
    • 79953131091 scopus 로고    scopus 로고
    • COST action " EuroTelepath" : digital pathology integration in electronic health record, including primary care centres
    • 10.1186/1746-1596-6-S1-S6, 3073224, 21489201
    • García Rojo M, Castro AM, Gonçalves L. COST action " EuroTelepath" : digital pathology integration in electronic health record, including primary care centres. Diagn Pathol 2011, 6(Suppl 1):S6. 10.1186/1746-1596-6-S1-S6, 3073224, 21489201.
    • (2011) Diagn Pathol , vol.6 , Issue.SUPPL. 1
    • García Rojo, M.1    Castro, A.M.2    Gonçalves, L.3
  • 4
    • 84880046583 scopus 로고    scopus 로고
    • Intégration des lames virtuelles dans le dossier patient électronique
    • Univ Paris Diderot-Paris 7
    • Ameisen D. Intégration des lames virtuelles dans le dossier patient électronique. PhD thesis 2013, Univ Paris Diderot-Paris 7.
    • (2013) PhD thesis
    • Ameisen, D.1
  • 10
    • 24744456340 scopus 로고    scopus 로고
    • The cell graphs of cancer
    • 10.1093/bioinformatics/bth933, 15262793
    • Gunduz C, Yener B, Gultekin SH. The cell graphs of cancer. Bioinformatics 2004, 20(Suppl 1):i145-i151. 10.1093/bioinformatics/bth933, 15262793.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 1145-1151
    • Gunduz, C.1    Yener, B.2    Gultekin, S.H.3
  • 11
    • 27544469752 scopus 로고    scopus 로고
    • Augmented cell-graphs for automated cancer diagnosis
    • 10.1093/bioinformatics/bti1100, 16204128
    • Gunduz C, Gultekin SH, Yener B. Augmented cell-graphs for automated cancer diagnosis. Bioinformatics 2005, 21(Suppl 2):ii7-ii12. 10.1093/bioinformatics/bti1100, 16204128.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2 , pp. 117-1112
    • Gunduz, C.1    Gultekin, S.H.2    Yener, B.3
  • 12
    • 77952243411 scopus 로고    scopus 로고
    • The proportion of tumour cells is an independent predictor for survival in colorectal cancer patients
    • 10.1038/sj.bjc.6605674, 2869173, 20407439
    • West NP, Dattani M, McShane P, Hutchins G, Grabsch J, Mueller W, Treanor D, Quirke P, Grabsch H. The proportion of tumour cells is an independent predictor for survival in colorectal cancer patients. Br J Cancer 2010, 102:1519-1523. 10.1038/sj.bjc.6605674, 2869173, 20407439.
    • (2010) Br J Cancer , vol.102 , pp. 1519-1523
    • West, N.P.1    Dattani, M.2    McShane, P.3    Hutchins, G.4    Grabsch, J.5    Mueller, W.6    Treanor, D.7    Quirke, P.8    Grabsch, H.9
  • 13
    • 84875989569 scopus 로고    scopus 로고
    • Invariant delineation of nuclear architecture in Glioblastoma multiforme for clinical and molecular association
    • Chang H, Han J, Borowsky A, Loss L, Gray JW, Spellman PT, Parvin B. Invariant delineation of nuclear architecture in Glioblastoma multiforme for clinical and molecular association. IEEE Trans Med Imag 2013, 32(4):670-682.
    • (2013) IEEE Trans Med Imag , vol.32 , Issue.4 , pp. 670-682
    • Chang, H.1    Han, J.2    Borowsky, A.3    Loss, L.4    Gray, J.W.5    Spellman, P.T.6    Parvin, B.7
  • 14
    • 33947733143 scopus 로고    scopus 로고
    • Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the internet
    • 10.1186/1746-1596-1-10, 1524814, 16764733
    • Kayser K, Radziszowski D, Bzdyl P, Sommer R, Kayser G. Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the internet. Diagn Pathol 2006, 1:10. 10.1186/1746-1596-1-10, 1524814, 16764733.
    • (2006) Diagn Pathol , vol.1 , pp. 10
    • Kayser, K.1    Radziszowski, D.2    Bzdyl, P.3    Sommer, R.4    Kayser, G.5
  • 15
    • 84880039723 scopus 로고    scopus 로고
    • Meta analysis low grade glioma database project
    • PLGA Foundation
    • PLGA Foundation Meta analysis low grade glioma database project. 2012, [http://www.fightplga.org/research/PLGA-Sponsored_Projects/MetaAnalysis], PLGA Foundation.
    • (2012)
  • 16
    • 77149135744 scopus 로고    scopus 로고
    • Review of imaging solutions for integrated quantitative immunohistochemistry in the Pathology daily practice
    • García Rojo M, Bueno G, Slodkowska J. Review of imaging solutions for integrated quantitative immunohistochemistry in the Pathology daily practice. Folia Histochem Cytobiol 2009, 47(3):349-354.
    • (2009) Folia Histochem Cytobiol , vol.47 , Issue.3 , pp. 349-354
    • García Rojo, M.1    Bueno, G.2    Slodkowska, J.3
  • 17
    • 84855271946 scopus 로고    scopus 로고
    • ImageJ
    • Rasband WS. ImageJ. 1997-2012. [http://imagej.nih.gov/ij/].
    • Rasband, W.S.1
  • 19
    • 84880040068 scopus 로고    scopus 로고
    • GraphicsMagick
    • GraphicsMagick Group
    • GraphicsMagick Group GraphicsMagick. 2013, [http://www.graphicsmagick.org/], GraphicsMagick Group.
    • (2013)
  • 21
    • 79953153879 scopus 로고    scopus 로고
    • Grid computing in image analysis
    • 10.1186/1746-1596-6-S1-S12, 3073205, 21516880
    • Kayser K, Görtler J, Borkenfeld S, Kayser G. Grid computing in image analysis. Diagn Pathol 2011, 6(Suppl 1):S12. 10.1186/1746-1596-6-S1-S12, 3073205, 21516880.
    • (2011) Diagn Pathol , vol.6 , Issue.SUPPL. 1
    • Kayser, K.1    Görtler, J.2    Borkenfeld, S.3    Kayser, G.4
  • 23
    • 84866151673 scopus 로고    scopus 로고
    • Introduction of virtual microscopy in routine surgical pathology - a hypothesis and personal view from Europe
    • 10.1186/1746-1596-7-48, 3441330, 22546238
    • Kayser K. Introduction of virtual microscopy in routine surgical pathology - a hypothesis and personal view from Europe. Diagn Pathol 2012, 7:48. 10.1186/1746-1596-7-48, 3441330, 22546238.
    • (2012) Diagn Pathol , vol.7 , pp. 48
    • Kayser, K.1
  • 24
    • 79952446953 scopus 로고    scopus 로고
    • A vendor-neutral library and viewer for whole-slide images
    • Tech. Rep. Technical Report CMU-CS-08-136, Computer Science Department, Carnegie Mellon University
    • Goode A, Satyanarayanan M. A vendor-neutral library and viewer for whole-slide images. 2008, Tech. Rep. Technical Report CMU-CS-08-136, Computer Science Department, Carnegie Mellon University [http://reports-archive.adm.cs.cmu.edu/anon/2008/CMU-CS-08-136.pdf].
    • (2008)
    • Goode, A.1    Satyanarayanan, M.2
  • 26
    • 84873994336 scopus 로고    scopus 로고
    • Open source tools for management and archiving of digital microscopy data to allow integration with patient pathology and treatment information
    • 10.1186/1746-1596-8-22, 3575263, 23402499
    • Khushi M, Edwards G, de Marcos DA, Carpenter JE, Graham JD, Clarke CL. Open source tools for management and archiving of digital microscopy data to allow integration with patient pathology and treatment information. Diagn Pathol 2013, 8:22. 10.1186/1746-1596-8-22, 3575263, 23402499.
    • (2013) Diagn Pathol , vol.8 , pp. 22
    • Khushi, M.1    Edwards, G.2    de Marcos, D.A.3    Carpenter, J.E.4    Graham, J.D.5    Clarke, C.L.6
  • 27
    • 84880037210 scopus 로고    scopus 로고
    • LibTIFF - TIFF Library and Utilities
    • the authors of L.
    • Sam Leffler S, the authors of L. LibTIFF - TIFF Library and Utilities. 2012, [http://www.remotesensing.org/libtiff/].
    • (2012)
    • Sam Leffler, S.1
  • 28
    • 84880046096 scopus 로고    scopus 로고
    • The Independent JPEG Group's JPEG software
    • Lane TG, Vollbeding G. The Independent JPEG Group's JPEG software. 2013, [http://www.ijg.org/].
    • (2013)
    • Lane, T.G.1    Vollbeding, G.2
  • 29
    • 84874019164 scopus 로고    scopus 로고
    • Libjpeg-turbo
    • the authors of the libjpeg-turbo software
    • Lane TG, Vollbeding G, the authors of the libjpeg-turbo software libjpeg-turbo. 2012, [http://libjpeg-turbo.virtualgl.org/], the authors of the libjpeg-turbo software.
    • (2012)
    • Lane, T.G.1    Vollbeding, G.2
  • 30
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ 25 years of image analysis
    • 10.1038/nmeth.2089, 22930834
    • Schneider CA, Rasband WS, Eliceiri KW. NIH Image to ImageJ 25 years of image analysis. Nat Methods 2012, 9:671-675. 10.1038/nmeth.2089, 22930834.
    • (2012) Nat Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 31
    • 84880037807 scopus 로고    scopus 로고
    • Image IO Plugin Bundle
    • Sacha J. Image IO Plugin Bundle. 2004, [http://ij-plugins.sourceforge.net/plugins/imageio/].
    • (2004)
    • Sacha, J.1
  • 32
    • 84880040273 scopus 로고    scopus 로고
    • Java Advanced Library 1.1.3
    • Sun Microsystems I. Java Advanced Library 1.1.3. 2006, [http://www.oracle.com/technetwork/java/current-142188.html].
    • (2006)
    • Sun Microsystems, I.1
  • 33
    • 84880047308 scopus 로고    scopus 로고
    • BigTIFF Design
    • BigTIFF Design. 2012, [http://www.remotesensing.org/libtiff/bigtiffdesign.html].
    • (2012)
  • 34
    • 84880035243 scopus 로고    scopus 로고
    • The BigTIFF File Format Proposal
    • The BigTIFF File Format Proposal. 2008, [http://www.awaresystems.be/imaging/tiff/bigtiff.html].
    • (2008)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.