MEME-LaB: Motif analysis in clusters

Bioinformatics

Volumn 29, Issue 13, 2013, Pages 1696-1697

  Brown, Paul ^a   Baxter, Laura ^a   Hickman, Richard ^a   Beynon, Jim ^b   Moore, Jonathan D ^a   Ott, Sascha ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

^b UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ALGORITHM; BINDING SITE; CLUSTER ANALYSIS; COMPUTER PROGRAM; DNA SEQUENCE; INTERNET; METABOLISM; NUCLEOTIDE MOTIF; PROMOTER REGION; ARTICLE;

ALGORITHMS; BINDING SITES; CLUSTER ANALYSIS; INTERNET; NUCLEOTIDE MOTIFS; PROMOTER REGIONS, GENETIC; SEQUENCE ANALYSIS, DNA; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 84879967750     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt248     Document Type: Conference Paper

References (6)

1. Bailey, T.L. et al. (2006) MEME: Discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res., 34, W369-W373.
2. Bryne, J.C. et al. (2008) JASPAR, the open access database of transcription factorbinding profiles: New content and tools in the 2008 update. Nucleic Acids Res., 36, D102-D106.
3. Higo, K. et al. (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res., 27, 297-300.
4. Machanick, P. and Bailey, T.L. (2012) MEME-ChIP: Notif analysis of large DNA datasets. Bioinformatics, 27, 1696-1697.
5. O'Connor, T.R. et al. (2005) Athena: A resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences. Bioinformatics, 21, 4411-4413.
6. Windram, O. et al. (2012) Arabidopsis defense against Botrytis cinerea: Chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. Plant Cell, 24, 3530-3557.