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Volumn 3, Issue , 2013, Pages

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; CONNECTOME; ORGANIZATION; PREDICTION; STORAGE; ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; CYTOLOGY; HUMAN; METABOLISM; METHODOLOGY; NERVE CELL NETWORK; PROTEIN ANALYSIS; STRUCTURE ACTIVITY RELATION;

EID: 84879948383     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep01613     Document Type: Article
Times cited : (386)

References (42)
  • 1
    • 0001847481 scopus 로고
    • Publications of the Mathematical Institute of the Hungarian Academy of Sciences
    • Erdos, P. & Rényi, A. On the evolution of random graphs. Publications of the Mathematical Institute of the Hungarian Academy of Sciences 5, 17-61 (1960).
    • (1960) On the Evolution of Random Graphs , vol.5 , pp. 17-61
    • Erdos, P.1    Rényi, A.2
  • 2
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts, D. J. & Strogatz, S. H. Collective dynamics of 'small-world' networks. Nature 393, 440-442 (1998).
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 3
    • 0034310033 scopus 로고    scopus 로고
    • Models of the small world
    • Newman, M. E. J. Models of the small world. J Stat Phys 101, 819-841 (2000).
    • (2000) J Stat Phys , vol.101 , pp. 819-841
    • Newman, M.E.J.1
  • 4
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A. L. & Albert, R. Emergence of scaling in random networks. Science 286, 509-512 (1999).
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 5
    • 0016996037 scopus 로고
    • A general theory of bibliometric and other cumulative advantage processes
    • Price, D. D. S. A General Theory of Bibliometric and Other Cumulative Advantage Processes. J Am Soc Inf Sci Tec 27, 292-306 (1976).
    • (1976) J Am Soc Inf Sci Tec , vol.27 , pp. 292-306
    • Price, D.D.S.1
  • 7
    • 34249751638 scopus 로고    scopus 로고
    • The link-prediction problem for social networks
    • Liben-Nowell, D. & Kleinberg, J. The link-prediction problem for social networks. J Am Soc Inf Sci Tec 58, 1019-1031 (2007).
    • (2007) J Am Soc Inf Sci Tec , vol.58 , pp. 1019-1031
    • Liben-Nowell, D.1    Kleinberg, J.2
  • 8
    • 84860540554 scopus 로고    scopus 로고
    • Evaluating network models: A likelihood analysis
    • Wang, W. Q., Zhang, Q. M. & Zhou, T. Evaluating network models: A likelihood analysis. Epl-Europhys Lett 98 (2012).
    • (2012) Epl-Europhys Lett , vol.98
    • Wang, W.Q.1    Zhang, Q.M.2    Zhou, T.3
  • 9
    • 78751613300 scopus 로고    scopus 로고
    • Link prediction in complex networks: A survey
    • Lu, L. Y. & Zhou, T. Link prediction in complex networks: A survey. Physica A 390, 1150-1170 (2011).
    • (2011) Physica A , vol.390 , pp. 1150-1170
    • Lu, L.Y.1    Zhou, T.2
  • 11
    • 0035420724 scopus 로고    scopus 로고
    • Clustering and preferential attachment in growing networks
    • Newman, M. E. J. Clustering and preferential attachment in growing networks. Phys Rev E 64 (2001).
    • (2001) Phys Rev E , vol.64
    • Newman, M.E.J.1
  • 12
    • 0001368374 scopus 로고
    • Distribution de la flore alpine dans le bassin des Dranses et dans quelques régions voisines
    • Jaccard, P. Distribution de la flore alpine dans le bassin des Dranses et dans quelques régions voisines. Bulletin de la Société Vaudoise des Sciences Naturelles 37, 241-272 (1901).
    • (1901) Bulletin de la Société Vaudoise des Sciences Naturelles , vol.37 , pp. 241-272
    • Jaccard, P.1
  • 13
    • 10944272139 scopus 로고    scopus 로고
    • Friends and neighbors on the Web
    • Adamic, L. A. & Adar, E. Friends and neighbors on the Web. Social Networks 25, 211-230 (2003).
    • (2003) Social Networks , vol.25 , pp. 211-230
    • Adamic, L.A.1    Adar, E.2
  • 14
    • 84870843485 scopus 로고    scopus 로고
    • Predicting missing links via local information
    • Zhou, T., Lu, L. Y. & Zhang, Y. C. Predicting missing links via local information. Eur Phys J B 71, 623-630 (2009).
    • (2009) Eur Phys J B , vol.71 , pp. 623-630
    • Zhou, T.1    Lu, L.Y.2    Zhang, Y.C.3
  • 15
    • 77955518815 scopus 로고    scopus 로고
    • Link communities reveal multiscale complexity in networks
    • 761-U711
    • Ahn, Y. Y., Bagrow, J. P. & Lehmann, S. Link communities reveal multiscale complexity in networks. Nature 466, 761-U711 (2010).
    • (2010) Nature , vol.466
    • Ahn, Y.Y.1    Bagrow, J.P.2    Lehmann, S.3
  • 16
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: A structural description of the human brain
    • Sporns, O., Tononi, G. & Kotter, R. The human connectome: A structural description of the human brain. Plos Comput Biol 1, 245-251 (2005).
    • (2005) Plos Comput Biol , vol.1 , pp. 245-251
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 17
    • 42449089355 scopus 로고    scopus 로고
    • Protein fingerprints of cultured CA3-CA1 hippocampal neurons: Comparative analysis of the distribution of synaptosomal and cytosolic proteins
    • Corti, V. et al. Protein fingerprints of cultured CA3-CA1 hippocampal neurons: comparative analysis of the distribution of synaptosomal and cytosolic proteins. BMC Neurosci 9, 36 (2008).
    • (2008) BMC Neurosci , vol.9 , pp. 36
    • Corti, V.1
  • 18
    • 72449186535 scopus 로고    scopus 로고
    • NEUROSCIENCE new tricks and old spines
    • Ziv, N. E. & Ahissar, E. NEUROSCIENCE New tricks and old spines. Nature 462, 859-861 (2009).
    • (2009) Nature , vol.462 , pp. 859-861
    • Ziv, N.E.1    Ahissar, E.2
  • 19
    • 79952376773 scopus 로고    scopus 로고
    • Network anatomy and in vivo physiology of visual cortical neurons
    • 177-U159
    • Bock, D. D. et al. Network anatomy and in vivo physiology of visual cortical neurons. Nature 471, 177-U159 (2011).
    • (2011) Nature , vol.471
    • Bock, D.D.1
  • 20
    • 84863059751 scopus 로고    scopus 로고
    • Link prediction in complex networks: A clustering perspective
    • Feng, X., Zhao, J. C. & Xu, K. Link prediction in complex networks: a clustering perspective. Eur Phys J B 85 (2012).
    • (2012) Eur Phys J B , vol.85
    • Feng, X.1    Zhao, J.C.2    Xu, K.3
  • 21
    • 33746636451 scopus 로고    scopus 로고
    • Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems
    • Kaiser, M. & Hilgetag, C. C. Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems. Plos Comput Biol 2, 805-815 (2006).
    • (2006) Plos Comput Biol , vol.2 , pp. 805-815
    • Kaiser, M.1    Hilgetag, C.C.2
  • 23
    • 67149107463 scopus 로고    scopus 로고
    • The intense world syndrome - An alternative hypothesis for autism
    • Markram, H., Rinaldi, T. & Markram, K. The intense world syndrome - an alternative hypothesis for autism. Front Neurosci 1, 77-96 (2007).
    • (2007) Front Neurosci , vol.1 , pp. 77-96
    • Markram, H.1    Rinaldi, T.2    Markram, K.3
  • 26
    • 0035161824 scopus 로고    scopus 로고
    • Parasitoids of grass-feeding chalcid wasps: A comparison of German and British communities
    • Tscharntke, T., Vidal, S. & Hawkins, B. A. Parasitoids of grass-feeding chalcid wasps: a comparison of German and British communities. Oecologia 129, 445-451 (2001).
    • (2001) Oecologia , vol.129 , pp. 445-451
    • Tscharntke, T.1    Vidal, S.2    Hawkins, B.A.3
  • 27
    • 43049151837 scopus 로고    scopus 로고
    • Hierarchical structure and the prediction of missing links in networks
    • Clauset, A., Moore, C. & Newman, M. E. J. Hierarchical structure and the prediction of missing links in networks. Nature 453, 98-101 (2008).
    • (2008) Nature , vol.453 , pp. 98-101
    • Clauset, A.1    Moore, C.2    Newman, M.E.J.3
  • 28
    • 76049100050 scopus 로고    scopus 로고
    • Missing and spurious interactions and the reconstruction of complex networks
    • Guimera, R. & Sales-Pardo, M. Missing and spurious interactions and the reconstruction of complex networks. P Natl Acad Sci USA 106, 22073-22078 (2009).
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 22073-22078
    • Guimera, R.1    Sales-Pardo, M.2
  • 29
    • 77958498250 scopus 로고    scopus 로고
    • Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data
    • You, Z.-H., Lei, Y.-K., Gui, J., Huang, D.-S. & Zhou, X. Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data. Bioinformatics (Oxford, England) 26, 2744-2751 (2010).
    • (2010) Bioinformatics (Oxford, England) , vol.26 , pp. 2744-2751
    • You, Z.-H.1    Lei, Y.-K.2    Gui, J.3    Huang, D.-S.4    Zhou, X.5
  • 30
    • 0036493195 scopus 로고    scopus 로고
    • Interaction generality, a measurement to assess the reliability of a protein-protein interaction
    • Saito, R., Suzuki, H. & Hayashizaki, Y. Interaction generality, a measurement to assess the reliability of a protein-protein interaction. Nucleic acids research 30, 1163-1168 (2002).
    • (2002) Nucleic Acids Research , vol.30 , pp. 1163-1168
    • Saito, R.1    Suzuki, H.2    Hayashizaki, Y.3
  • 31
    • 1442329655 scopus 로고    scopus 로고
    • Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network
    • Brun, C. et al. Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome biology 5, R6-R6 (2003).
    • (2003) Genome Biology , vol.5 , pp. R6-R6
    • Brun, C.1
  • 32
    • 67650735594 scopus 로고    scopus 로고
    • Complex discovery from weighted PPI networks
    • Liu, G., Wong, L. & Chua, H. N. Complex discovery from weighted PPI networks. Bioinformatics 25, 1891-1897 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1891-1897
    • Liu, G.1    Wong, L.2    Chua, H.N.3
  • 33
    • 33745619564 scopus 로고    scopus 로고
    • Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
    • Chua, H. N., Sung, W.-K. & Wong, L. Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics (Oxford, England) 22, 1623-1630 (2006).
    • (2006) Bioinformatics (Oxford, England) , vol.22 , pp. 1623-1630
    • Chua, H.N.1    Sung, W.-K.2    Wong, L.3
  • 35
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk, D. et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic acids research 39, D561-568 (2011).
    • (2011) Nucleic Acids Research , vol.39 , pp. D561-568
    • Szklarczyk, D.1
  • 38
    • 79955879494 scopus 로고    scopus 로고
    • Controllability of complex networks
    • Liu, Y. Y., Slotine, J. J. & Barabasi, A. L. Controllability of complex networks. Nature 473, 167-173 (2011).
    • (2011) Nature , vol.473 , pp. 167-173
    • Liu, Y.Y.1    Slotine, J.J.2    Barabasi, A.L.3
  • 39
    • 20344377406 scopus 로고    scopus 로고
    • The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles
    • Guimera, R., Mossa, S., Turtschi, A. & Amaral, L. A. N. The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles. P Natl Acad Sci USA 102, 7794-7799 (2005).
    • (2005) P Natl Acad Sci USA , vol.102 , pp. 7794-7799
    • Guimera, R.1    Mossa, S.2    Turtschi, A.3    Amaral, L.A.N.4
  • 40
    • 79960149420 scopus 로고    scopus 로고
    • RING: Networking interacting residues, evolutionary information and energetics in protein structures
    • Martin, A. J. M. et al. RING: networking interacting residues, evolutionary information and energetics in protein structures. Bioinformatics 27, 2003-2005 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2003-2005
    • Martin, A.J.M.1
  • 41
    • 0034704229 scopus 로고    scopus 로고
    • A global geometric framework for nonlinear dimensionality reduction
    • Tenenbaum, J. B., de Silva, V. & Langford, J. C. A global geometric framework for nonlinear dimensionality reduction. Science (New York, N. Y.) 290, 2319-2323 (2000).
    • (2000) Science (New York, N. Y.) , vol.290 , pp. 2319-2323
    • Tenenbaum, J.B.1    De Silva, V.2    Langford, J.C.3


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