Determination of accurate protein monoisotopic mass with the most abundant mass measurable using high-resolution mass spectrometry

Analytical Biochemistry

Volumn 440, Issue 1, 2013, Pages 108-113

  Chen, Ya Fen ^a   Chang, C Allen ^a   Lin, Yu Hsuan ^a   Tsay, Yeou Guang ^a  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

Author keywords

High resolution mass spectrometry; Monoisotopic mass; Most abundant mass

Indexed keywords

ESCHERICHIA COLI; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY;

DIRECT EVALUATIONS; HIGH RESOLUTION MASS SPECTROMETRY; LINEAR CORRELATION; LIQUID CHROMATOGRAPHY - MASS SPECTROMETRIES; MONOISOTOPIC MASS; MOST ABUNDANT MASS; PARTS PER MILLIONS; PRIMARY STRUCTURES;

PROTEINS;

INSULIN; RIBONUCLEASE A;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; MASS SPECTROMETRY; MOLECULAR WEIGHT; NORMAL DISTRIBUTION; PREDICTION; PRIORITY JOURNAL; PROBABILITY; PROTEIN ANALYSIS;

ESCHERICHIA COLI;

EID: 84879830831     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2013.05.018     Document Type: Article

References (16)

1. Z. Zhang, H. Pan, X. Chen, Mass spectrometry for structural characterization of therapeutic antibodies, Mass Spectrom. Rev. 28 (2009) 147-176.
2. A. Staub, D. Guillarme, J. Schappler, J.L. Veuthey, S. Rudaz, Intact protein analysis in the biopharmaceutical field, J. Pharm. Biomed. Anal. 55 (2011) 810-822.
3. R.A. Zubarev, P.A. Demirev, Isotope depletion of large biomolecules: implications for molecular mass measurements, J. Am. Soc. Mass Spectrom. 9 (1998) 149-156.
4. R.A. Zubarev, P.V. Bondarenko, An a priori relationship between the average and monoisotopic masses of peptides and oligonucleotides, Rapid Commun. Mass Spectrom. 5 (1991) 177-276.
5. R.A. Zubarev, P.A. Demirev, P. Håkansson, B. Sundqvist, Approaches and limits for accurate mass characterization of large biomolecules, Anal. Chem. 67 (1995) 3793-3798.
6. R.A. Zubarev, P. Håkansson, B. Sundqvist, Accuracy requirements for peptide characterization by monoisotopic molecular mass measurements, Anal. Chem. 68 (1996) 4060-4063.
7. M.W. Senko, S.C. Beu, F.W. McLafferty, Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions, J. Am. Soc. Mass Spectrom. 6 (1995) 229-233.
8. M.W. Senko, S.C. Beu, F.W. McLafferty, Automated assignment of charge states from resolved isotopic peaks for multiply charged ions, J. Am. Soc. Mass Spectrom. 6 (1995) 52-56.
9. J.A. Yergey, A general approach to calculating isotopic distributions for mass spectrometry, Int. J. Mass Spectrom. Ion Phys. 52 (1983) 337-349.
10. D.M. Horn, R.A. Zubarev, F.W. McLafferty, Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules, J. Am. Soc. Mass Spectrom. 11 (2000) 320-332. (Pubitemid 34516332)
11. A.M. Mayampurath, N. Jaitly, S.O. Purvine, M.E. Monroe, K.J. Auberry, J.N. Adkins, R.D. Smith, DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra, Bioinformatics 24 (2008) 1021-1023. (Pubitemid 351448041)
12. X. Liu, Y. Inbar, P.C. Dorrestein, C. Wynne, N. Edwards, P. Souda, J.P. Whitelegge, V. Bafna, P.A. Pevzner, Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach, Mol. Cell. Proteomics 9 (2010) 2772-2782.
13. A.J. Goraczko, Molecular mass and location of the most abundant peak of the molecular ion isotopomeric cluster, J. Mol. Model. 11 (2005) 271-277. (Pubitemid 41644659)
14. B. Macek, L.F. Waanders, J.V. Olsen, M. Mann, Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-Orbitrap mass spectrometer, Mol. Cell. Proteomics 5 (2006) 949-958. (Pubitemid 43792803)
15. B. Bogdanov, R.D. Smith, Proteomics by FTICR mass spectrometry: top down and bottom up, Mass Spectrom. Rev. 24 (2005) 168-200. (Pubitemid 40328973)
16. T.B. Coplen, J.K. Böhlke, P. De Bièvre, T. Ding, N.E. Holden, J.A. Hopple, H.R. Krouse, A. Lanberty, H.S. Peiser, K. Révész, S.E. Rieder, K.J.R. Rosman, E. Roth, P.D.P. Taylor, J.R.D. Vocke, Y.K. Xiao, Isotope-abundance variations of selected elements, Pure Appl. Chem. 74 (2002) 1987-2017.