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Volumn 60, Issue 4, 2013, Pages 421-428

Termite hindguts and the ecology of microbial communities in the sequencing age

Author keywords

Diversity; high throughput; oxymonad; parabasalia; protist; single cell; symbiosis

Indexed keywords

BACTERIUM; BIOGEOGRAPHY; COCKROACH; COMMUNITY ECOLOGY; GENOMICS; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; PROTIST; SPECIES DIVERSITY; SYMBIOSIS; TERMITE;

EID: 84879793997     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/jeu.12048     Document Type: Article
Times cited : (4)

References (53)
  • 1
    • 84872127373 scopus 로고    scopus 로고
    • Do microbes have macroecology? Large-scale patterns in the diversity and distribution of marine benthic ciliates
    • Azovsky, A., &, Mazei, Y., 2012. Do microbes have macroecology? Large-scale patterns in the diversity and distribution of marine benthic ciliates. Glob. Ecol. Biogeogr., 22: 163-172.
    • (2012) Glob. Ecol. Biogeogr. , vol.22 , pp. 163-172
    • Azovsky, A.1    Mazei, Y.2
  • 3
    • 84900292271 scopus 로고    scopus 로고
    • Role of the termite gut microbiota in symbiotic digestion
    • Bignell, D. Roisin, Y. & Lo, N. (ed.), Springer, New York. p.
    • Brune, A., &, Ohkuma, M., 2011. Role of the termite gut microbiota in symbiotic digestion. In:, Bignell, D., Roisin, Y., &, Lo, N., (ed.), Biology of Termites: A Modern Synthesis. Springer, New York. p. 439-475.
    • (2011) Biology of Termites: A Modern Synthesis , pp. 439-475
    • Brune, A.1    Ohkuma, M.2
  • 6
    • 80053180572 scopus 로고    scopus 로고
    • Symbiosis, morphology, and phylogeny of Hoplonymphidae (Parabasalia) of the wood-feeding roach Cryptocercus punctulatus
    • Carpenter, K. J., Horak, A., Chow, L., &, Keeling, P. J., 2011. Symbiosis, morphology, and phylogeny of Hoplonymphidae (Parabasalia) of the wood-feeding roach Cryptocercus punctulatus. J. Eukaryot. Microbiol., 58: 426-436.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 426-436
    • Carpenter, K.J.1    Horak, A.2    Chow, L.3    Keeling, P.J.4
  • 7
    • 77954864300 scopus 로고    scopus 로고
    • Critical taxonomic revision of parabasalids with description of one new genus and three new species
    • Cepicka, I., Hampl, V., &, Kulda, J., 2010. Critical taxonomic revision of parabasalids with description of one new genus and three new species. Protist, 161: 400-433.
    • (2010) Protist , vol.161 , pp. 400-433
    • Cepicka, I.1    Hampl, V.2    Kulda, J.3
  • 8
    • 77954834182 scopus 로고    scopus 로고
    • Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing
    • Cheung, M. K., Au, C. H., Chu, K. H., Kwan, H. S., &, Wong, C. K., 2010. Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing. ISME J., 4: 1053-1059.
    • (2010) ISME J. , vol.4 , pp. 1053-1059
    • Cheung, M.K.1    Au, C.H.2    Chu, K.H.3    Kwan, H.S.4    Wong, C.K.5
  • 9
    • 0032128233 scopus 로고    scopus 로고
    • Phylogenetic placement of Trichonympha
    • Dacks, J. B., &, Redfield, R. J., 1998. Phylogenetic placement of Trichonympha. J. Eukaryot. Microbiol., 45: 445-447.
    • (1998) J. Eukaryot. Microbiol. , vol.45 , pp. 445-447
    • Dacks, J.B.1    Redfield, R.J.2
  • 11
    • 4043087606 scopus 로고    scopus 로고
    • The ubiquity of small species: Patterns of local and global diversity
    • Fenchel, T., &, Finlay, B., 2004. The ubiquity of small species: patterns of local and global diversity. Bioscience, 54: 777-784.
    • (2004) Bioscience , vol.54 , pp. 777-784
    • Fenchel, T.1    Finlay, B.2
  • 12
    • 38649107084 scopus 로고    scopus 로고
    • Protist diversity and distribution: Some basic considerations
    • Foissner, W., 2007. Protist diversity and distribution: some basic considerations. Biodivers. Conserv., 17: 235-242.
    • (2007) Biodivers. Conserv. , vol.17 , pp. 235-242
    • Foissner, W.1
  • 13
    • 78449271446 scopus 로고    scopus 로고
    • Evidence for cryptic speciation in Carchesium polypinum Linnaeus, 1758 (Ciliophora: Peritrichia) inferred from mitochondrial, nuclear, and, morphological markers
    • Gentekaki, E., &, Lynn, D. H., 2010. Evidence for cryptic speciation in Carchesium polypinum Linnaeus, 1758 (Ciliophora: Peritrichia) inferred from mitochondrial, nuclear, and, morphological markers. J. Eukaryot. Microbiol., 57: 508-519.
    • (2010) J. Eukaryot. Microbiol. , vol.57 , pp. 508-519
    • Gentekaki, E.1    Lynn, D.H.2
  • 14
    • 80053644612 scopus 로고    scopus 로고
    • Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov
    • Gile, G. H., James, E. R., Scheffrahn, R. H., Carpenter, K. J., Harper, J. T., &, Keeling, P. J., 2011. Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov. Int. J. Syst. Evol. Micr., 61: 2547-2558.
    • (2011) Int. J. Syst. Evol. Micr. , vol.61 , pp. 2547-2558
    • Gile, G.H.1    James, E.R.2    Scheffrahn, R.H.3    Carpenter, K.J.4    Harper, J.T.5    Keeling, P.J.6
  • 15
    • 85027937727 scopus 로고    scopus 로고
    • On the nature of species: Insights from Paramecium and other ciliates
    • Hall, M. S., &, Katz, L. A., 2011. On the nature of species: insights from Paramecium and other ciliates. Genetica, 139: 677-684.
    • (2011) Genetica , vol.139 , pp. 677-684
    • Hall, M.S.1    Katz, L.A.2
  • 16
    • 68949126781 scopus 로고    scopus 로고
    • The inadequacy of morphology for species and genus delineation in microbial eukaryotes: An example from the parabasalian termite symbiont Coronympha
    • Harper, J. T., Gile, G. H., James, E. R., Carpenter, K. J., &, Keeling, P. J., 2009. The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont Coronympha. PLoS ONE, 4: e6577.
    • (2009) PLoS ONE , vol.4
    • Harper, J.T.1    Gile, G.H.2    James, E.R.3    Carpenter, K.J.4    Keeling, P.J.5
  • 17
    • 33747360985 scopus 로고    scopus 로고
    • The phylogenetic position of the oxymonad Saccinobaculus based on SSU rRNA
    • Heiss, A. A., &, Keeling, P. J., 2006. The phylogenetic position of the oxymonad Saccinobaculus based on SSU rRNA. Protist, 157: 335-344.
    • (2006) Protist , vol.157 , pp. 335-344
    • Heiss, A.A.1    Keeling, P.J.2
  • 21
    • 84875064454 scopus 로고    scopus 로고
    • Cthulhu macrofasciculumque n. g., n. sp. and Cthylla microfasciculumque n. g., n. sp., a newly identified lineage of parabasalian termite symbionts
    • James, E. R., Okamoto, N., Burki, F., Scheffrahn, R. H., &, Keeling, P. J., 2013. Cthulhu macrofasciculumque n. g., n. sp. and Cthylla microfasciculumque n. g., n. sp., a newly identified lineage of parabasalian termite symbionts. PLoS ONE, 8: e58509.
    • (2013) PLoS ONE , vol.8
    • James, E.R.1    Okamoto, N.2    Burki, F.3    Scheffrahn, R.H.4    Keeling, P.J.5
  • 22
    • 84862773769 scopus 로고    scopus 로고
    • Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata
    • Katz, L. A., DeBerardinis, J., Hall, M. S., Kovner, A. M., Dunthorn, M., &, Muse, S. V., 2012. Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata. J. Mol. Evol., 73: 266-272.
    • (2012) J. Mol. Evol. , vol.73 , pp. 266-272
    • Katz, L.A.1    Deberardinis, J.2    Hall, M.S.3    Kovner, A.M.4    Dunthorn, M.5    Muse, S.V.6
  • 23
    • 38849090298 scopus 로고    scopus 로고
    • Comparison of symbiotic flagellate faunae between termites and a wood-feeding cockroach of the genus Cryptocercus
    • Kitade, O., 2004. Comparison of symbiotic flagellate faunae between termites and a wood-feeding cockroach of the genus Cryptocercus. Microbes Environ., 19: 215-220.
    • (2004) Microbes Environ. , vol.19 , pp. 215-220
    • Kitade, O.1
  • 24
    • 84858700238 scopus 로고    scopus 로고
    • COI barcoding of nebelid testate amoebae (Amoebozoa: Arcellinida): Extensive cryptic diversity and redefinition of the Hyalospheniidae Schultze
    • Kosakyan, A., Heger, T. J., Leander, B. S., Todorov, M., Mitchell, E. A. D., &, Lara, E., 2012. COI barcoding of nebelid testate amoebae (Amoebozoa: Arcellinida): extensive cryptic diversity and redefinition of the Hyalospheniidae Schultze. Protist, 163: 415-434.
    • (2012) Protist , vol.163 , pp. 415-434
    • Kosakyan, A.1    Heger, T.J.2    Leander, B.S.3    Todorov, M.4    Mitchell, E.A.D.5    Lara, E.6
  • 25
    • 2542424759 scopus 로고    scopus 로고
    • Symbiotic innovation in the oxymonad Streblomastix strix
    • Leander, B. S., &, Keeling, P. J., 2004. Symbiotic innovation in the oxymonad Streblomastix strix. J. Eukaryot. Microbiol., 51: 291-300.
    • (2004) J. Eukaryot. Microbiol. , vol.51 , pp. 291-300
    • Leander, B.S.1    Keeling, P.J.2
  • 26
    • 0003168404 scopus 로고
    • Parasites of the termites
    • Second Series.
    • Leidy, J., 1881. Parasites of the termites. J. Acad. Nat. Sci. Phila., 8, Second Series: 425-447.
    • (1881) J. Acad. Nat. Sci. Phila. , vol.8 , pp. 425-447
    • Leidy, J.1
  • 27
    • 84867740787 scopus 로고    scopus 로고
    • Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
    • Logares, R., Audic, S., Santini, S., Pernice, M. C., de Vargas, C., &, Massana, R., 2012. Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. ISME J., 6: 1823-1833.
    • (2012) ISME J. , vol.6 , pp. 1823-1833
    • Logares, R.1    Audic, S.2    Santini, S.3    Pernice, M.C.4    De Vargas, C.5    Massana, R.6
  • 28
    • 77249122950 scopus 로고    scopus 로고
    • Patterns of genetic diversity in the marine heterotrophic flagellate Oxyrrhis marina (Alveolata Dinophyceae)
    • Lowe, C. D., Montagnes, D. J. S., Martin, L. E., &, Watts, P. C., 2010. Patterns of genetic diversity in the marine heterotrophic flagellate Oxyrrhis marina (Alveolata Dinophyceae). Protist, 161: 212-221.
    • (2010) Protist , vol.161 , pp. 212-221
    • Lowe, C.D.1    Montagnes, D.J.S.2    Martin, L.E.3    Watts, P.C.4
  • 29
    • 79551547052 scopus 로고    scopus 로고
    • Discovering diatom species: Is a long history of disagreements about species-level taxonomy now at an end?
    • Mann, D. G., 2010. Discovering diatom species: is a long history of disagreements about species-level taxonomy now at an end? Pl. Ecol. Evol., 143: 251-264.
    • (2010) Pl. Ecol. Evol. , vol.143 , pp. 251-264
    • Mann, D.G.1
  • 31
    • 77951868309 scopus 로고    scopus 로고
    • Matters of scale
    • McGill, B. J., 2010. Matters of scale. Science, 328: 575-576.
    • (2010) Science , vol.328 , pp. 575-576
    • McGill, B.J.1
  • 33
    • 0034823663 scopus 로고    scopus 로고
    • Detritivory, coprophagy, and the evolution of digestive mutualisms in Dictyoptera
    • Nalepa, C., Bignell, D., &, Bandi, C., 2001. Detritivory, coprophagy, and the evolution of digestive mutualisms in Dictyoptera. Insect. Soc., 48: 194-201.
    • (2001) Insect. Soc. , vol.48 , pp. 194-201
    • Nalepa, C.1    Bignell, D.2    Bandi, C.3
  • 35
    • 67349119879 scopus 로고    scopus 로고
    • Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution
    • Noda, S., Mantini, C., Bordereau, C., Kitade, O., Dolan, M. F., Viscogliosi, E., &, Ohkuma, M., 2009. Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution. Mol. Phylogenet. Evol., 52: 217-224.
    • (2009) Mol. Phylogenet. Evol. , vol.52 , pp. 217-224
    • Noda, S.1    Mantini, C.2    Bordereau, C.3    Kitade, O.4    Dolan, M.F.5    Viscogliosi, E.6    Ohkuma, M.7
  • 36
    • 18144396908 scopus 로고    scopus 로고
    • Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Hypermastigea
    • Ohkuma, M., Iida, T., Ohtoko, K., Yuzawa, H., Noda, S., Viscogliosi, E., &, Kudo, T., 2005. Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Hypermastigea. Mol. Phylogenet. Evol., 35: 646-655.
    • (2005) Mol. Phylogenet. Evol. , vol.35 , pp. 646-655
    • Ohkuma, M.1    Iida, T.2    Ohtoko, K.3    Yuzawa, H.4    Noda, S.5    Viscogliosi, E.6    Kudo, T.7
  • 37
    • 58149229431 scopus 로고    scopus 로고
    • Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and the cockroach Cryptocercus
    • Ohkuma, M., Noda, S., Hongoh, Y., Nalepa, C. A., &, Inoue, T., 2008. Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and the cockroach Cryptocercus. P. Roy. Soc. B Bio., 276: 239-245.
    • (2008) P. Roy. Soc. B Bio. , vol.276 , pp. 239-245
    • Ohkuma, M.1    Noda, S.2    Hongoh, Y.3    Nalepa, C.A.4    Inoue, T.5
  • 38
    • 84863986885 scopus 로고    scopus 로고
    • Effect of oxygen minimum zone formation on communities of marine protists
    • Orsi, W., Song, Y. C., Hallam, S., &, Edgcomb, V., 2012. Effect of oxygen minimum zone formation on communities of marine protists. ISME J., 6: 1586-1601.
    • (2012) ISME J. , vol.6 , pp. 1586-1601
    • Orsi, W.1    Song, Y.C.2    Hallam, S.3    Edgcomb, V.4
  • 40
    • 61649103533 scopus 로고    scopus 로고
    • SSU rRNA gene variation resolves population heterogeneity and ecophysiological differentiation within a morphospecies (Stramenopiles, Chrysophyceae)
    • Pfandl, K., Chatzinotas, A., Dyal, P., &, Boenigk, J., 2009. SSU rRNA gene variation resolves population heterogeneity and ecophysiological differentiation within a morphospecies (Stramenopiles, Chrysophyceae). Limnol. Oceanogr., 54: 171.
    • (2009) Limnol. Oceanogr. , vol.54 , pp. 171
    • Pfandl, K.1    Chatzinotas, A.2    Dyal, P.3    Boenigk, J.4
  • 41
    • 81355151286 scopus 로고    scopus 로고
    • Morphology and molecular phylogeny of Pseudotrichonympha hertwigi and Pseudotrichonympha paulistana (Trichonymphea, Parabasalia) from neotropical rhinotermitids
    • Saldarriaga, J. F., Gile, G. H., James, E. R., Horak, A., Scheffrahn, R. H., &, Keeling, P. J., 2011. Morphology and molecular phylogeny of Pseudotrichonympha hertwigi and Pseudotrichonympha paulistana (Trichonymphea, Parabasalia) from neotropical rhinotermitids. J. Eukaryot. Microbiol., 58: 487-496.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 487-496
    • Saldarriaga, J.F.1    Gile, G.H.2    James, E.R.3    Horak, A.4    Scheffrahn, R.H.5    Keeling, P.J.6
  • 42
    • 79959783353 scopus 로고    scopus 로고
    • Multiple levels of synergistic collaboration in termite lignocellulose digestion
    • Scharf, M. E., Karl, Z. J., Sethi, A., &, Boucias, D. G., 2011. Multiple levels of synergistic collaboration in termite lignocellulose digestion. PLoS ONE, 6: e21709.
    • (2011) PLoS ONE , vol.6
    • Scharf, M.E.1    Karl, Z.J.2    Sethi, A.3    Boucias, D.G.4
  • 44
    • 0038614939 scopus 로고    scopus 로고
    • Phylogenetic diversity and whole-cell hybridization of oxymonad flagellates from the hindgut of the wood-feeding lower termite Reticulitermes flavipes
    • Stingl, U., &, Brune, A., 2003. Phylogenetic diversity and whole-cell hybridization of oxymonad flagellates from the hindgut of the wood-feeding lower termite Reticulitermes flavipes. Protist, 154: 147-155.
    • (2003) Protist , vol.154 , pp. 147-155
    • Stingl, U.1    Brune, A.2
  • 45
    • 77951908579 scopus 로고    scopus 로고
    • Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
    • Stoeck, T., Bass, D., Nebel, M., Christen, R., Jones, M. D. M., Breiner, H.-W., &, Richards, T. A., 2010. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol. Ecol., 19: 21-31.
    • (2010) Mol. Ecol. , vol.19 , pp. 21-31
    • Stoeck, T.1    Bass, D.2    Nebel, M.3    Christen, R.4    Jones, M.D.M.5    Breiner, H.-W.6    Richards, T.A.7
  • 47
    • 70349902544 scopus 로고    scopus 로고
    • The true diversity of devescovinid flagellates in the termite Incisitermes marginipennis
    • Strassert, J. F. H., Desai, M. S., Brune, A., &, Radek, R., 2009. The true diversity of devescovinid flagellates in the termite Incisitermes marginipennis. Protist, 160: 522-535.
    • (2009) Protist , vol.160 , pp. 522-535
    • Strassert, J.F.H.1    Desai, M.S.2    Brune, A.3    Radek, R.4
  • 48
    • 84874839159 scopus 로고    scopus 로고
    • Single-cell DNA barcoding using sequences from the small subunit rRNA and internal transcribed spacer region identifies new species of Trichonympha and Trichomitopsis from the hindgut of the termite Zootermopsis angusticollis
    • Tai, V., James, E. R., Perlman, S. J., &, Keeling, P. J., 2013. Single-cell DNA barcoding using sequences from the small subunit rRNA and internal transcribed spacer region identifies new species of Trichonympha and Trichomitopsis from the hindgut of the termite Zootermopsis angusticollis. PLoS ONE, 8: e58728.
    • (2013) PLoS ONE , vol.8
    • Tai, V.1    James, E.R.2    Perlman, S.J.3    Keeling, P.J.4
  • 49
    • 70449408785 scopus 로고    scopus 로고
    • Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes
    • Tartar, A., Wheeler, M. M., Zhou, X., Coy, M. R., Boucias, D. G., &, Scharf, M. E., 2009. Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes. Biotechnol. Biofuels, 2: 25.
    • (2009) Biotechnol. Biofuels , vol.2 , pp. 25
    • Tartar, A.1    Wheeler, M.M.2    Zhou, X.3    Coy, M.R.4    Boucias, D.G.5    Scharf, M.E.6
  • 51
    • 77649083100 scopus 로고    scopus 로고
    • Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach
    • Todaka, N., Inoue, T., Saita, K., Ohkuma, M., Nalepa, C. A., Lenz, M., Kudo, T., &, Moriya, S., 2010. Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach. PLoS ONE, 5: e8636.
    • (2010) PLoS ONE , vol.5
    • Todaka, N.1    Inoue, T.2    Saita, K.3    Ohkuma, M.4    Nalepa, C.A.5    Lenz, M.6    Kudo, T.7    Moriya, S.8
  • 53
    • 84862823608 scopus 로고    scopus 로고
    • Carbohydrate-active enzymes revealed in Coptotermes formosanus (Isoptera: Rhinotermitidae) transcriptome
    • Zhang, D., Lax, A. R., Henrissat, B., Coutinho, P., Katiya, N., Nierman, W. C., &, Fedorova, N., 2012. Carbohydrate-active enzymes revealed in Coptotermes formosanus (Isoptera: Rhinotermitidae) transcriptome. Insect Mol. Biol., 21: 235-245.
    • (2012) Insect Mol. Biol. , vol.21 , pp. 235-245
    • Zhang, D.1    Lax, A.R.2    Henrissat, B.3    Coutinho, P.4    Katiya, N.5    Nierman, W.C.6    Fedorova, N.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.