Molecular and morphological characterization of Indian farmers rice varieties (Oryza sativa L.)

Australian Journal of Crop Science

Volumn 7, Issue 7, 2013, Pages 923-932

  Pachauri, Vinita ^a   Taneja, Nilay ^b   Vikram, Prashant ^c   Singh, Nagendra Kumar ^a   Singh, Sanjay ^d  

^a NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

^b DR D Y PATIL BIOTECHNOLOGY AND BIOINFORMATICS INSTITUTE   (India)

^c INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^d INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

Cluster analysis; Genetic diversity; Grain and Cooking qualities; Microsatellite markers; Rice

Indexed keywords

EID: 84879490663     PISSN: 18352693     EISSN: 18352707     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite framework map providing genome wide coverage in rice (Oryza sativa L.). Theor Appl Genet 95: 553-567.
2. Deshmukh R, Singh A, Jain N, Anand S, Gacche R, Singh AK, Gaikwad KS, Sharma TR, Mohapatra T, Singh NK (2010) Identification of candidate genes for grain number in rice (Oryza sativa L.). Funct Integr Genomics 10: 339-347.
3. Duwick DN (1984) Genetic diversity in major farm crops on the farm and reserve. Econ Bot 32: 161-178.
4. Fan C, Yu S, Wang C, Xing Y (2008) A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional Marker. Theor Appl Genet 118(3): 465-472
5. FAO (2002) A report on: Crops and drops- making the best use of water for agriculture Food and Agriculture Organization of the United Nations. Rome.
6. Government of India Office memorandum No. 1514, New Delhi, October 29, 2008
7. Hore DK (2005) Rice diversity collection, conservation and management in northeastern India. Genetic Resources and Crop Evolution 52: 1129-1140.
8. Jennings PR, Coffman WR, Kauffman HE (1979) Grain Quality. In: Rice improvement. Los Banos (Philippines) Intl Rice Res Inst 101-120
9. Joshi SP, Gupta VS, Aggarwal RK, Ranjekar PK, Brar DS (2000) Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor Appl Genet 100; 1311-1320.
10. Khush GS, Paule CM, Cruz NMDL (1979). Rice grain quality evaluation and improvement at IRRI. Proceedings workshop on chemical aspects of rice grain quality. IRRI, Los Banos, Laguna, Philippines, 21-31.
11. Kibria K, Nur F, Begum SN, Islam MM, Paul SK, Rahman KS, Azam SMM (2009) Molecular marker based genetic diversity analysis in aromatic rice genotypes using SSR and RAPD markers. Int J Sustain Crop Prod 4(1): 23-34.
12. Lanceras JC, Huang ZL, Naivikul O, Vanavichit A, Ruanjaichon V Tragoonrung S (2000) Mapping of genes for cooking and eating qualities in Thai Jasmine rice (KDML105). DNA Res. 7: 93-101.
13. Little RR, Hilder GB, Dawson EH (1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chem 35: 111-126.
14. Maclean JL, Dawe DC, Hardy B, and Hettel GP (ed.) (2002). Rice Almanac, Los Baños (Philippines): International Rice Research Institute, Bouaké (Côte d'Ivoire): West Africa Rice Development Association, Cali (Colombia): International Center for Tropical Agriculture, Rome (Italy): Food and Agriculture Organization.
15. McCouch SR, Chen X, Panaud O, Temnykh S, Xu Y, Chao YG, Huang N, Ishii T, Blair M (1997) Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Mol Biol 35(1-2): 89-99.
16. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res 8: 4321-4325.
17. Nagaraju J, Kathirvel M, Kumar R, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc Natl Acad Sci. 99(9): 5836-5841.
18. Nei J, Pewter M, Mackill BJ (2002) Evaluation of genetic diversity in rice sub species using microsatellite markers. Crop Sci. 42: 601-607.
19. Pachauri V, Singh MK, Singh AK, Singh S, Shakeel NA, Singh VP, Singh NK (2010) Origin and genetic diversity of aromatic rice varieties, molecular breeding and chemical and genetic basis of rice aroma. J Plant Biochem Biotechnol. 19(2): 127-143.
20. Prathepha P (2009) The fragrance (fgr) gene in natural populations of wild rice (Oryza rufipogon Griff.) Genet Resour Crop Evol 56: 13-18.
21. Ravi M, Geethanjali S, Sameeyafarheen F, Maheswaran M (2003) Molecular marler based genetic diversity analysis in rice (Oryza sativa L.) using RAPD and SSR markers. Euphytica 133: 243-252.
22. Singh RK, Singh US (2003) A Treatise on Scented Rices of India, Kalyani Publishers, New Delhi.
23. Sivaranjani AKP, Pandey MK, Sudharshan I, Kumar GR, Madhav MS, Sundaram RM, Varaprasad GS, Rani NS (2010) Assessment of genetic diversity among Basmati and non-Basmati aromatic rices of India using SSR markers. Current Sci. 99(2): 221-226.
24. Sood BC, Siddiq EA (1978) A rapid technique for scent determination in rice. Ind J Genet Plant Breed 38: 268-271.
25. Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho YG, Ishii T, McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor Appl Genet 100: 697-712.
26. Tragoonrung S, Sheng JQ, Vanavichit A (1996) Tagging an aromatic gene in lowland rice using bulk segregant analysis. International Rice Research Institute, Rice genetics III.
27. Vikram P, Swamy BPM, Dixit S, Sta Cruz, Ahmed HU, Singh AK, Kumar A (2011) qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds. BMC Genet. 12, 89.
28. Vikram P, Swamy BPM, Dixit S, Ahmed HU, Sta Cruz, Singh AK, Kumar A (2012). Bulk Segregant Analysis: "An effective approach for mapping consistent-effect drought grain yield QTLs in rice" Field Crops Res. 134:185-192.