메뉴 건너뛰기




Volumn 3, Issue 4, 2013, Pages

Identification of ovarian cancer driver genes by using module network integration of multi-omics data

Author keywords

Copy number; Data integration; DNA methylation; Gene expression; Ovarian cancer

Indexed keywords


EID: 84879436153     PISSN: 20428898     EISSN: 20428901     Source Type: Journal    
DOI: 10.1098/rsfs.2013.0013     Document Type: Article
Times cited : (45)

References (26)
  • 1
    • 84864347822 scopus 로고    scopus 로고
    • Molecular biology in oncology and its influence on clinical practice: Gene expression profiling
    • Sotiriou C. 2009 Molecular biology in oncology and its influence on clinical practice: gene expression profiling. Ann. Oncol. 20, 10.
    • (2009) Ann. Oncol , vol.20 , pp. 10
    • Sotiriou, C.1
  • 2
    • 69949102185 scopus 로고    scopus 로고
    • Integration of molecular profiling into the lung cancer clinic
    • (doi:10.1158/1078-0432.CCR- 09-0913)
    • Pao W et al. 2009 Integration of molecular profiling into the lung cancer clinic. Clin. Cancer Res. 15, 5317-5322. (doi:10.1158/1078-0432.CCR- 09-0913)
    • (2009) Clin. Cancer Res , vol.15 , pp. 5317-5322
    • Pao, W.1
  • 3
    • 77952966689 scopus 로고    scopus 로고
    • Prediction of cancer outcome using DNA microarray technology: Past, present and future
    • (doi:10.1517/17530050802680172)
    • Gevaert O, De Moor B. 2009 Prediction of cancer outcome using DNA microarray technology: past, present and future. Expert Opin. Med. Diagn. 3, 157-165. (doi:10.1517/17530050802680172)
    • (2009) Expert Opin. Med. Diagn , vol.3 , pp. 157-165
    • Gevaert, O.1    de Moor, B.2
  • 4
    • 84856535081 scopus 로고    scopus 로고
    • Mutual exclusivity analysis identifies oncogenic network modules
    • (doi:10.1101/gr.125567.111)
    • Ciriello G, Cerami E, Sander C, Schultz N. 2011 Mutual exclusivity analysis identifies oncogenic network modules. Genome Res. 22, 398-406. (doi:10.1101/gr.125567.111)
    • (2011) Genome Res , vol.22 , pp. 398-406
    • Ciriello, G.1    Cerami, E.2    Sander, C.3    Schultz, N.4
  • 5
    • 84856532705 scopus 로고    scopus 로고
    • De novo discovery of mutated driver pathways in cancer
    • (doi:10.1101/gr. 120477.111)
    • Vandin F, Upfal E, Raphael BJ. 2011 De novo discovery of mutated driver pathways in cancer. Genome Res. 22, 375-385. (doi:10.1101/gr. 120477.111)
    • (2011) Genome Res , vol.22 , pp. 375-385
    • Vandin, F.1    Upfal, E.2    Raphael, B.J.3
  • 6
    • 78649976005 scopus 로고    scopus 로고
    • An integrated approach to uncover drivers of cancer
    • (doi:10.1016/j.cell.2010.11.013)
    • Akavia UD et al. 2010 An integrated approach to uncover drivers of cancer. Cell 143, 1005-1017. (doi:10.1016/j.cell.2010.11.013)
    • (2010) Cell , vol.143 , pp. 1005-1017
    • Akavia, U.D.1
  • 7
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • (doi:10. 1038/nature10166)
    • Bell D et al. 2011 Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615. (doi:10. 1038/nature10166)
    • (2011) Nature , vol.474 , pp. 609-615
    • Bell, D.1
  • 10
    • 34249717863 scopus 로고    scopus 로고
    • Disease-specific genomic analysis: Identifying the signature of pathologic biology
    • (doi:10.1093/ bioinformatics/btm033)
    • Nicolau M, Tibshirani R, Borresen-Dale AL, Jeffrey SS. 2007 Disease-specific genomic analysis: identifying the signature of pathologic biology. Bioinformatics 23, 957-965. (doi:10.1093/ bioinformatics/btm033)
    • (2007) Bioinformatics , vol.23 , pp. 957-965
    • Nicolau, M.1    Tibshirani, R.2    Borresen-Dale, A.L.3    Jeffrey, S.S.4
  • 11
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • (doi:10.1186/ gb-2011-12-4-r41)
    • Mermel CH, Schumacher SE, Hill B, Meyerson ML, Beroukhim R, Getz G. 2011 GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol. 12, R41. (doi:10.1186/ gb-2011-12-4-r41)
    • (2011) Genome Biol , vol.12
    • Mermel, C.H.1    Schumacher, S.E.2    Hill, B.3    Meyerson, M.L.4    Beroukhim, R.5    Getz, G.6
  • 15
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • (doi:10.1093/biostatistics/kxj037)
    • Johnson WE, Li C, Rabinovic A. 2007 Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8, 118-127. (doi:10.1093/biostatistics/kxj037)
    • (2007) Biostatistics , vol.8 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 16
    • 48249130869 scopus 로고    scopus 로고
    • Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma
    • (doi:10.1158/1078-0432.CCR-07-4959)
    • Tone AA, Begley H, Sharma M, Murphy J, Rosen B, Brown TJ, Shaw PA. 2008 Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma. Clin. Cancer Res. 14, 4067-4078. (doi:10.1158/1078-0432.CCR-07-4959)
    • (2008) Clin. Cancer Res , vol.14 , pp. 4067-4078
    • Tone, A.A.1    Begley, H.2    Sharma, M.3    Murphy, J.4    Rosen, B.5    Brown, T.J.6    Shaw, P.A.7
  • 17
    • 84863230370 scopus 로고    scopus 로고
    • High-grade serous ovarian cancer arises from fallopian tube in a mouse model
    • (doi:10.1073/ pnas.1117135109)
    • Kim J, Coffey DM, Creighton CJ, Yu Z, Hawkins SM, Matzuk MM. 2012 High-grade serous ovarian cancer arises from fallopian tube in a mouse model. Proc. Natl Acad. Sci. USA 109, 3921-3926. (doi:10.1073/ pnas.1117135109)
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 3921-3926
    • Kim, J.1    Coffey, D.M.2    Creighton, C.J.3    Yu, Z.4    Hawkins, S.M.5    Matzuk, M.M.6
  • 18
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • (doi:10. 1073/pnas.0506580102)
    • Subramanian A et al. 2005 Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550. (doi:10. 1073/pnas.0506580102)
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 19
    • 75549084555 scopus 로고    scopus 로고
    • GeneSigDB-a curated database of gene expression signatures
    • (doi:10.1093/nar/ gkp1015)
    • Culhane AC et al. 2010 GeneSigDB-a curated database of gene expression signatures. Nucleic Acids Res. 38, D716-D725. (doi:10.1093/nar/ gkp1015)
    • (2010) Nucleic Acids Res , vol.38
    • Culhane, A.C.1
  • 20
    • 77957243164 scopus 로고    scopus 로고
    • ChEA: Transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
    • (doi:10.1093/bioinformatics/btq466)
    • Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. 2010 ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics 26, 2438-2444. (doi:10.1093/bioinformatics/btq466)
    • (2010) Bioinformatics , vol.26 , pp. 2438-2444
    • Lachmann, A.1    Xu, H.2    Krishnan, J.3    Berger, S.I.4    Mazloom, A.R.5    Ma'Ayan, A.6
  • 21
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 22
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Tibshirani R, Hastie T, Friedman J. 2010 Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw. 33, 1-22.
    • (2010) J. Stat. Softw , vol.33 , pp. 1-22
    • Tibshirani, R.1    Hastie, T.2    Friedman, J.3
  • 25
    • 33847397773 scopus 로고    scopus 로고
    • Gene expression profile of ovarian serous papillary carcinomas: Identification of metastasis-associated genes
    • (doi:10.1016/j.ajog. 2006.10.874)
    • Bignotti E et al. 2007 Gene expression profile of ovarian serous papillary carcinomas: identification of metastasis-associated genes. Am. J. Obstet. Gynecol. 196, 245.e1-245.e11. (doi:10.1016/j.ajog. 2006.10.874)
    • (2007) Am. J. Obstet. Gynecol , vol.196
    • Bignotti, E.1
  • 26
    • 84867919330 scopus 로고    scopus 로고
    • Targeting Notch, a key pathway for ovarian cancer stem cells, sensitizes tumors to platinum therapy
    • (doi:10.1073/pnas. 1206400109)
    • McAuliffe SM et al. 2012 Targeting Notch, a key pathway for ovarian cancer stem cells, sensitizes tumors to platinum therapy. Proc. Natl Acad. Sci. USA 109, E2939-E2948. (doi:10.1073/pnas. 1206400109)
    • (2012) Proc. Natl Acad. Sci. USA , vol.109
    • McAuliffe, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.