-
1
-
-
0035408587
-
Genome annotation: From sequence to biology
-
Stein, L. Genome annotation: From sequence to biology Nat. Rev. Genet. 2001, 2, 493-503
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 493-503
-
-
Stein, L.1
-
2
-
-
79960179572
-
The human proteome project: Current state and future direction
-
Legrain, P.; Aebersold, R.; Archakov, A.; Bairoch, A.; Bala, K. The human proteome project: Current state and future direction Mol. Cell. Proteomics 2011, 10, M111.009993
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. 111009993
-
-
Legrain, P.1
Aebersold, R.2
Archakov, A.3
Bairoch, A.4
Bala, K.5
-
3
-
-
79951534020
-
Proteomics, human proteome project, and chromosomes
-
Hancock, W.; Omenn, G.; Legrain, P.; Paik, Y. K. Proteomics, human proteome project, and chromosomes J. Proteome Res. 2011, 10, 210
-
(2011)
J. Proteome Res.
, vol.10
, pp. 210
-
-
Hancock, W.1
Omenn, G.2
Legrain, P.3
Paik, Y.K.4
-
4
-
-
84863229647
-
The Chromosome-centric human proteome project for cataloging proteins encoded in the genome
-
Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Hanash, S. The Chromosome-centric human proteome project for cataloging proteins encoded in the genome Nat. Biotechnol. 2012, 30, 221-223
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 221-223
-
-
Paik, Y.K.1
Jeong, S.K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
-
5
-
-
84859622404
-
Standard guidelines for the chromosome-centric human proteome project
-
Paik, Y. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Marko-Varga, G. Standard guidelines for the chromosome-centric human proteome project J. Proteome Res. 2012, 11, 2005-2013
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2005-2013
-
-
Paik, Y.K.1
Omenn, G.S.2
Uhlen, M.3
Hanash, S.4
Marko-Varga, G.5
-
6
-
-
72449129559
-
Building the 'practical' human proteome project - The next big thing in basic and clinical proteomics
-
Baker, M. S. Building the 'practical' human proteome project-the next big thing in basic and clinical proteomics Curr. Opin. Mol. Ther. 2009, 11, 600-602
-
(2009)
Curr. Opin. Mol. Ther.
, vol.11
, pp. 600-602
-
-
Baker, M.S.1
-
7
-
-
0038495746
-
The DNA sequence of human chromosome 7
-
Hillier, L. W.; Fulton, R. S.; Fulton, L. A.; Graves, T. A.; Pepin, K. H. The DNA sequence of human chromosome 7 Nature 2003, 424, 157-164
-
(2003)
Nature
, vol.424
, pp. 157-164
-
-
Hillier, L.W.1
Fulton, R.S.2
Fulton, L.A.3
Graves, T.A.4
Pepin, K.H.5
-
8
-
-
5444224123
-
Human chromosome 7 circa 2004: A model for structural and functional studies of the human genome
-
Scherer, S. W.; Green, E. D. Human chromosome 7 circa 2004: a model for structural and functional studies of the human genome Hum. Mol. Genet. 2004, 13 (special no. 2) R303-R313
-
(2004)
Hum. Mol. Genet.
, vol.13
, Issue.2
-
-
Scherer, S.W.1
Green, E.D.2
-
9
-
-
35448979197
-
Gene amplifications at chromosome 7 of the human gastric cancer genome
-
Yang, S. Gene amplifications at chromosome 7 of the human gastric cancer genome Int. J. Mol. Med. 2007, 20, 225-231
-
(2007)
Int. J. Mol. Med.
, vol.20
, pp. 225-231
-
-
Yang, S.1
-
10
-
-
84862187489
-
NeXtProt: A knowledge platform for human proteins
-
Epub 2011 Dec 11.
-
Lane, L.; Argoud-Puy, G.; Britan, A.; Cusin, I.; Duek, P. D.;. neXtProt: a knowledge platform for human proteins. Nucleic Acids Res. 2012, 40 (Database issue): D76-83. Epub 2011 Dec 11.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
, pp. 76-83
-
-
Lane, L.1
Argoud-Puy, G.2
Britan, A.3
Cusin, I.4
Duek, P.D.5
-
11
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F.; Gish, W.; Miller, W.; Myers, E. W.; Lipman, D. J. Basic local alignment search tool J. Mol. Biol. 1990, 215, 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
12
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
UniProt Consortium, ()
-
UniProt Consortium Reorganizing the protein space at the Universal Protein Resource (UniProt) Nucleic Acids Res. 2012, 40 (Database issue) D71-75
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
, pp. 71-75
-
-
-
13
-
-
0030801002
-
(1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F.; Madden, T. L.; Schäffer, A. A.; Zhang, J.; Zhang, Z. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 1997, 25, 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
14
-
-
33846474760
-
A hitchhiker's guide to expressed sequence tag (EST) analysis
-
Nagaraj, S. H.; Gasser, R. B.; Ranganathan, S. A hitchhiker's guide to expressed sequence tag (EST) analysis Brief Bioinform. 2007, 8, 6-21
-
(2007)
Brief Bioinform.
, vol.8
, pp. 6-21
-
-
Nagaraj, S.H.1
Gasser, R.B.2
Ranganathan, S.3
-
15
-
-
67349256185
-
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes
-
Ranganathan, S.; Menon, R.; Gasser, R. B. Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance-fundamental insights toward biotechnological outcomes Biotechnol. Adv. 2009, 27, 439-448
-
(2009)
Biotechnol. Adv.
, vol.27
, pp. 439-448
-
-
Ranganathan, S.1
Menon, R.2
Gasser, R.B.3
-
16
-
-
84857872165
-
In silico secretome analysis approach using next generation sequencing transcriptomic data
-
Garg, G.; Ranganathan, S. In silico secretome analysis approach using next generation sequencing transcriptomic data BMC Genomics 2011, 12 (Suppl 3) S14
-
(2011)
BMC Genomics
, vol.12
, Issue.SUPPL. 3
, pp. 14
-
-
Garg, G.1
Ranganathan, S.2
-
17
-
-
84877929214
-
TranSeqAnnotator: Large-scale analysis of transcriptomic data
-
Menon, R.; Garg, G.; Gasser, R. B.; Ranganathan, S. TranSeqAnnotator: large-scale analysis of transcriptomic data BMC Bioinform. 2012, 13 (Suppl 17) S24
-
(2012)
BMC Bioinform.
, vol.13
, Issue.SUPPL. 17
, pp. 24
-
-
Menon, R.1
Garg, G.2
Gasser, R.B.3
Ranganathan, S.4
-
18
-
-
84879403744
-
High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets
-
In; Gupta, V. K. Tuohy, M. G. Ayyachamy, M. Turner, K. M. O'Donovan, A. Springer: New York
-
Garg, G.; Ranganathan, S. High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets. In Laboratory Protocols in Fungal Biology: Current Methods in Fungal Biology; Gupta, V. K.; Tuohy, M. G.; Ayyachamy, M.; Turner, K. M.; O'Donovan, A., Eds.; Springer: New York, 2013, pp. 569-574.
-
(2013)
Laboratory Protocols in Fungal Biology: Current Methods in Fungal Biology
, pp. 569-574
-
-
Garg, G.1
Ranganathan, S.2
-
19
-
-
23144458473
-
InterProScan: Protein domains identifier
-
Quevillon, E.; Silventoinen, V.; Pillai, S.; Harte, N.; Mulder, N. InterProScan: protein domains identifier Nucleic Acids Res. 2005, 33, W116-W120
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
-
20
-
-
24644503098
-
BLAST2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa, A.; Gotz, S.; Garcia-Gomez, J. M.; Terol, J.; Talon, M. BLAST2GO: a universal tool for annotation, visualization and analysis in functional genomics research Bioinformatics 2005, 21, 3674-3676
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
-
21
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa, M.; Goto, S.; Hattori, M.; Aoki-Kinoshita, K. F.; Itoh, M. From genomics to chemical genomics: new developments in KEGG Nucleic Acids Res. 2006, 34, D354-D357
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
-
22
-
-
79959986975
-
KOBAS 2.0: A web server for annotation and identification of enriched pathways and diseases
-
Xie, C.; Mao, X.; Huang, J.; Ding, Y.; Wu, J. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases Nucleic Acids Res. 2011, 39, W316-W322
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Xie, C.1
Mao, X.2
Huang, J.3
Ding, Y.4
Wu, J.5
-
23
-
-
84862777661
-
Whole-genome sequence of Schistosoma haematobium
-
Young, N. D.; Jex, A. R.; Li, B.; Liu, S.; Yang, L. Whole-genome sequence of Schistosoma haematobium Nat. Genet. 2012, 44, 221-225
-
(2012)
Nat. Genet.
, vol.44
, pp. 221-225
-
-
Young, N.D.1
Jex, A.R.2
Li, B.3
Liu, S.4
Yang, L.5
-
24
-
-
81855167105
-
Ascaris suum draft genome
-
Jex, A. R.; Liu, S.; Li, B.; Young, N. D.; Hall, R. S. Ascaris suum draft genome Nature 2011, 479 (7374) 529-33
-
(2011)
Nature
, vol.479
, Issue.7374
, pp. 529-533
-
-
Jex, A.R.1
Liu, S.2
Li, B.3
Young, N.D.4
Hall, R.S.5
-
25
-
-
84879343582
-
-
Protein Digestion Simulator
-
Protein Digestion Simulator: http://omics.pnl.gov/.
-
-
-
-
26
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp, T. P.; Woods, K. R. Prediction of protein antigenic determinants from amino acid sequences Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 3824-8
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
27
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander, C.; Schneider, R. Database of homology-derived protein structures and the structural meaning of sequence alignment Proteins 1991, 9, 56-68
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
28
-
-
79551489616
-
Humanins, the neuroprotective and cytoprotective peptides with antiapoptotic and anti-inflammatory properties
-
Zapała, B.; Kaczyński, Ł.; Kieć-Wilk, B.; Staszel, T.; Knapp, A. Humanins, the neuroprotective and cytoprotective peptides with antiapoptotic and anti-inflammatory properties Pharmacol. Rep. 2010, 62, 767-777
-
(2010)
Pharmacol. Rep.
, vol.62
, pp. 767-777
-
-
Zapała, B.1
Kaczyński, Ł.2
Kieć-Wilk, B.3
Staszel, T.4
Knapp, A.5
|