Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: Results from a manual alignment

Database

Volumn 2013, Issue , 2013, Pages

  Bertone, Matthew A ^a   Mikó, István ^a,b   Yoder, Matthew J ^a,c   Seltmann, Katja C ^a,d   Balhoff, James P ^e,f   Deans, Andrew R ^a,b  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

^c UNIVERSITY OF ILLINOIS   (United States)

^d DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

^e NATIONAL EVOLUTIONARY SYNTHESIS CENTER   (United States)

^f UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; DATA MINING; HISTOLOGY; HYMENOPTERA;

ALGORITHMS; ANIMALS; DATA MINING; HYMENOPTERA;

MLCS; MLOWN;

EID: 84879351485     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bas057     Document Type: Article

References (21)

1. Smith,B., Ashburner,M., Rosse,C. et al. (2007) The OBO foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol., 25, 1251-1255.
2. Ramírez,M.J., Coddington,J.K., Maddison,W.P. et al. (2007) Linking of digital images to phylogenetic data matrices using a morphological ontology. Syst. Biol., 56, 283-294.
3. Topalis,P., Tzavlaki,C., Vestak,K. et al. (2008) Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase. Insect Mol. Biol., 17, 87-89.
4. Drysdale,R. (2001) Phenotypic data in FlyBase. Brief. Bioinform., 2, 68-80.
5. Yoder,M.J., Mikó,I., Seltmann,K.C. et al. (2010) A gross anatomy ontology for Hymenoptera. PLoS One, 5, e15991.
6. Euzenat,J. and Shvaiko,P. (2007) Ontology Matching. Springer, Heidelberg.
7. Shvaiko,P. and Euzenat,J. (2008) Ten challenges for ontology matching. In: Proceedings of the 7th Conference on Ontologies, Databases, and Applications of Semantics (ODBASE), 11-13 November 2008. Monterey, Mexico, pp. 1164-1182.
8. Bodenreider,O., Hayamizu,T.F., Ringwald,M. et al. (2005) Of mice and men: aligning mouse and human anatomies. In: Proceedings of the American Medical Informatics Association (AIMA) Annual Symposium, Washington DC, USA, pp. 61-65.
9. Hayamizu,T.F., de Coronado,S., Fragoso,G. et al. (2012) The mouse-human anatomy ontology mapping project. Database, 2012, article ID bar066; doi:10.1093/database/bas066.
10. Haendel,M., Gkoutos,G.V., Lewis,S.E. et al. (2009) Uberon: towards a comprehensive multispecies anatomy ontology. Nat. Precedings, doi:10.1038/npre.2009.3592.1.
11. Mungall,C.J., Torniai,C., Gkoutos,G.V. et al. (2012) Uberon, an integrative multi-species anatomy ontology. Genome Biol., 13, R5.
12. Stevens,R., Goble,C.A. and Bechhofer,S. (2000) Ontology-based knowledge representation for bioinformatics. Brief. Bioinform., 1, 398-414.
13. Seltmann,K.C., Yoder,M.J., Mikó,I. et al. (2012) A hymenopterists' guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions. J. Hymenopt. Res., 27, 67-88.
14. Ubick,D.P., Paquin,P., Cushing,P.E. et al. (2005) Spiders of North America: An Identification Manual. American Arachnological Society.
15. Sonenshine,D.E. (1991) Biology of Ticks, Vol. 1. Oxford University Press, Oxford, New York.
16. Demerec,M. (1994) Biology of Drosophila. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
17. Zalokar,M. (1947) Anatomie du thorax de Drosophila melanogaster. Rev. Suisse Zool., 54, 17-53.
18. Harbach,R.E. (2011) Mosquito Taxonomic Inventory. http://mosquito- taxonomic-inventory.info/ (19 May 2011, date last accessed).
19. Ghazvinian,A., Noy,N.F. and Musen,M.A. (2009) Creating mappings for ontologies in biomedicine: simple methods work. In: AMIA. Annual Symposium (AMIA 2009), San Francisco, CA.
20. Haendel,M., Neuhaus,F., Osumi-Sutherland,D. et al. (2008) CARO-the common anatomy reference ontology. In: Burger,A., Davidson,D. and Baldock,R. (eds), Anatomy Ontologies for Bioinformatics: Principles and Practice. Springer, Heidelberg.
21. Osumi-Sutherland,D. (2011) CARO 2.0. In: Proceedings of the International Conference on Biomedical Ontology, Buffalo NY, USA.