-
1
-
-
33750652614
-
Brownian dynamics with hydrodynamic interactions
-
10.1063/1.436761
-
D. L. Ermak and J. A. McCammon, " Brownian dynamics with hydrodynamic interactions.," J. Chem. Phys. 69, 1352-1360 (1978). 10.1063/1.436761
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 1352-1360
-
-
Ermak, D.L.1
McCammon, J.A.2
-
2
-
-
7444247799
-
The intrinsic viscosities and diffusion constants of flexible macromolecules in solution
-
10.1063/1.1746947
-
J. G. Kirkwood and J. Riseman, " The intrinsic viscosities and diffusion constants of flexible macromolecules in solution.," J. Chem. Phys. 16, 565-573 (1948). 10.1063/1.1746947
-
(1948)
J. Chem. Phys.
, vol.16
, pp. 565-573
-
-
Kirkwood, J.G.1
Riseman, J.2
-
3
-
-
84982384045
-
The statistical mechanical theory of irreversible processes in solutions of flexible macromolecules: Visco-elastic behavior
-
10.1002/recl.19490680708
-
J. G. Kirkwood, " The statistical mechanical theory of irreversible processes in solutions of flexible macromolecules: Visco-elastic behavior.," Recl. Trav. Chim. Pays-Bas 68, 649-660 (1949). 10.1002/recl.19490680708
-
(1949)
Recl. Trav. Chim. Pays-Bas
, vol.68
, pp. 649-660
-
-
Kirkwood, J.G.1
-
4
-
-
0002480690
-
The general theory of irreversible processes in solutions of macromolecules
-
10.1002/pol.1954.120120102
-
J. G. Kirkwood, " The general theory of irreversible processes in solutions of macromolecules.," J. Polym. Sci. 12, 1-14 (1954). 10.1002/pol.1954.120120102
-
(1954)
J. Polym. Sci.
, vol.12
, pp. 1-14
-
-
Kirkwood, J.G.1
-
5
-
-
0014057375
-
Frictional coefficients of multisubunit structures. I. Theory
-
10.1002/bi1967.360050202
-
V. A. Bloomfield, K. E. Van Holde, and W. O. Dalton, " Frictional coefficients of multisubunit structures. I. Theory.," Biopolymers 5, 135-148 (1967). 10.1002/bip.1967.360050202
-
(1967)
Biopolymers
, vol.5
, pp. 135-148
-
-
Bloomfield, V.A.1
Van Holde, K.E.2
Dalton, W.O.3
-
6
-
-
0014056428
-
Frictional coefficients of multisubunit structures. II. Application to proteins and viruses
-
10.1002/bi1967.360050203
-
V. A. Bloomfield, K. E. Van Holde, and W. O. Dalton, " Frictional coefficients of multisubunit structures. II. Application to proteins and viruses.," Biopolymers 5, 149-159 (1967). 10.1002/bip.1967.360050203
-
(1967)
Biopolymers
, vol.5
, pp. 149-159
-
-
Bloomfield, V.A.1
Van Holde, K.E.2
Dalton, W.O.3
-
7
-
-
0014093679
-
Shell model calculations of rotational diffusion coefficients
-
10.1021/bi00858a011
-
D. P. Filson and V. A. Bloomfield, " Shell model calculations of rotational diffusion coefficients.," Biochemistry 6, 1650-1658 (1967). 10.1021/bi00858a011
-
(1967)
Biochemistry
, vol.6
, pp. 1650-1658
-
-
Filson, D.P.1
Bloomfield, V.A.2
-
8
-
-
0017403408
-
Hydrodynamic properties of macromolecular complexes. I. Translation
-
10.1002/bi1977.360160811
-
J. García de la Torre and V. A. Bloomfield, " Hydrodynamic properties of macromolecular complexes. I. Translation.," Biopolymers 16, 1747-1763 (1977). 10.1002/bip.1977.360160811
-
(1977)
Biopolymers
, vol.16
, pp. 1747-1763
-
-
De La Torre, J.G.1
Bloomfield, V.A.2
-
9
-
-
0027993838
-
HYDRO: A computer program for the prediction of hydrodynamic properties of macromolecules
-
10.1016/S0006-3495(94)80512-0
-
J. García de la Torre, S. Navarro, M. C. López Martínez, F. G. Diaz, and J. J. López Cascales, " HYDRO: A computer program for the prediction of hydrodynamic properties of macromolecules.," Biophys. J. 67, 530-531 (1994). 10.1016/S0006-3495(94) 80512-0
-
(1994)
Biophys. J.
, vol.67
, pp. 530-531
-
-
García De La Torre, J.1
Navarro, S.2
López Martínez, M.C.3
Diaz, F.G.4
López Cascales, J.J.5
-
10
-
-
0033039369
-
Hydrodynamic properties of rigid particles: Comparison of different modeling and computational procedures
-
10.1016/S0006-3495(99)77457-6
-
B. Carrasco and J. García de la Torre, " Hydrodynamic properties of rigid particles: Comparison of different modeling and computational procedures.," Biophys. J. 76, 3044-3057 (1999). 10.1016/S0006-3495(99)77457-6
-
(1999)
Biophys. J.
, vol.76
, pp. 3044-3057
-
-
Carrasco, B.1
García De La Torre, J.2
-
11
-
-
0001229341
-
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
-
10.1016/S0006-3495(00)76630-6
-
J. García de la Torre, M. L. Huertas, and B. Carrasco, " Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.," Biophys. J. 78, 719-730 (2000). 10.1016/S0006-3495(00)76630-6
-
(2000)
Biophys. J.
, vol.78
, pp. 719-730
-
-
García De La Torre, J.1
Huertas, M.L.2
Carrasco, B.3
-
12
-
-
80052470762
-
Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models
-
10.1016/j.bpj.2011.06.046
-
A. Ortega, D. Amorós, and J. García de la Torre, " Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models.," Biophys. J. 101, 892-898 (2011). 10.1016/j.bpj.2011.06.046
-
(2011)
Biophys. J.
, vol.101
, pp. 892-898
-
-
Ortega, A.1
Amorós, D.2
García De La Torre, J.3
-
13
-
-
2942560499
-
A precise boundary element method for macromolecular transport properties
-
10.1002/jcc.20045
-
S. Aragon, " A precise boundary element method for macromolecular transport properties.," J. Comput. Chem. 25, 1191-1205 (2004). 10.1002/jcc.20045
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1191-1205
-
-
Aragon, S.1
-
14
-
-
0027446430
-
Gating of the active site of triose phosphate isomerase: Brownian dynamics simulations of flexible peptide loops in the enzyme
-
10.1016/S0006-3495(93)81335-3
-
R. C. Wade, M. E. Davis, B. A. Luty, J. D. Madura, and J. A. McCammon, " Gating of the active site of triose phosphate isomerase: Brownian dynamics simulations of flexible peptide loops in the enzyme.," Biophys. J. 64, 9-15 (1993). 10.1016/S0006-3495(93)81335-3
-
(1993)
Biophys. J.
, vol.64
, pp. 9-15
-
-
Wade, R.C.1
Davis, M.E.2
Luty, B.A.3
Madura, J.D.4
McCammon, J.A.5
-
15
-
-
33744940504
-
Gated binding of ligands to hiv-1 protease: Brownian dynamics simulations in a coarse-grained model
-
10.1529/biophysj.105.074575
-
C. E. Chang, T. Y. Shen, J. Trylska, V. Tozzini, and J. A. McCammon, " Gated binding of ligands to hiv-1 protease: Brownian dynamics simulations in a coarse-grained model.," Biophys. J. 90, 3880-3885 (2006). 10.1529/biophysj.105.074575
-
(2006)
Biophys. J.
, vol.90
, pp. 3880-3885
-
-
Chang, C.E.1
Shen, T.Y.2
Trylska, J.3
Tozzini, V.4
McCammon, J.A.5
-
16
-
-
36549102274
-
Brownian dynamics simulation of diffusion-influenced bimolecular reactions
-
10.1063/1.446900
-
S. H. Northrup, S. A. Allison, and J. A. McCammon, " Brownian dynamics simulation of diffusion-influenced bimolecular reactions.," J. Chem. Phys. 80, 1517-1524 (1984). 10.1063/1.446900
-
(1984)
J. Chem. Phys.
, vol.80
, pp. 1517-1524
-
-
Northrup, S.H.1
Allison, S.A.2
McCammon, J.A.3
-
17
-
-
0030891436
-
Simulation of the diffusional association of barnase and barstar
-
10.1016/S0006-3495(97)78838-6
-
R. Gabdoulline and R. Wade, " Simulation of the diffusional association of barnase and barstar.," Biophys. J. 72, 1917-1929 (1997). 10.1016/S0006-3495(97)78838-6
-
(1997)
Biophys. J.
, vol.72
, pp. 1917-1929
-
-
Gabdoulline, R.1
Wade, R.2
-
18
-
-
77956262968
-
Browndye: A software package for Brownian dynamics
-
10.1016/j.cpc.2010.07.022
-
G. A. Huber and J. A. McCammon, " Browndye: A software package for Brownian dynamics.," Comput. Phys. Commun. 181, 1896-1905 (2010). 10.1016/j.cpc.2010.07.022
-
(2010)
Comput. Phys. Commun.
, vol.181
, pp. 1896-1905
-
-
Huber, G.A.1
McCammon, J.A.2
-
19
-
-
0000695805
-
Improved hydrodynamic interaction in macromolecular bead models
-
10.1063/1.479743
-
B. Carrasco and J. García de la Torre, " Improved hydrodynamic interaction in macromolecular bead models.," J. Chem. Phys. 111, 4817-4826 (1999). 10.1063/1.479743
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 4817-4826
-
-
Carrasco, B.1
García De La Torre, J.2
-
20
-
-
0021371295
-
Calculation of the resistance and mobility functions for two unequal rigid spheres in low-Reynolds-number flow
-
10.1017/S0022112084000355
-
D. J. Jeffrey and Y. Onishi, " Calculation of the resistance and mobility functions for two unequal rigid spheres in low-Reynolds-number flow.," J. Fluid Mech. 139, 261-290 (1984). 10.1017/S0022112084000355
-
(1984)
J. Fluid Mech.
, vol.139
, pp. 261-290
-
-
Jeffrey, D.J.1
Onishi, Y.2
-
21
-
-
84933517499
-
Variational treatment of hydrodynamic interaction in polymers
-
10.1063/1.1670977
-
J. Rotne and S. Prager, " Variational treatment of hydrodynamic interaction in polymers.," J. Chem. Phys. 50, 4831-4837 (1969). 10.1063/1.1670977
-
(1969)
J. Chem. Phys.
, vol.50
, pp. 4831-4837
-
-
Rotne, J.1
Prager, S.2
-
22
-
-
36849101815
-
Transport properties of polymer chains in dilute solution: Hydrodynamic interaction
-
10.1063/1.1673799
-
H. Yamakawa, " Transport properties of polymer chains in dilute solution: Hydrodynamic interaction.," J. Chem. Phys. 53, 436-443 (1970). 10.1063/1.1673799
-
(1970)
J. Chem. Phys.
, vol.53
, pp. 436-443
-
-
Yamakawa, H.1
-
23
-
-
0003836624
-
-
(Akademische Verlag, Leipzig)
-
C. W. Oseen, Hydrodynamik (Akademische Verlag, Leipzig, 1927).
-
(1927)
Hydrodynamik
-
-
Oseen, C.W.1
-
24
-
-
0010793863
-
Hydrodynamic interaction of two spherically symmetric polymers
-
10.1016/0378-4371(78)90167-X
-
P. Reuland, B. Felderhof, and R. Jones, " Hydrodynamic interaction of two spherically symmetric polymers.," Physica A 93, 465-475 (1978). 10.1016/0378-4371(78)90167-X
-
(1978)
Physica A
, vol.93
, pp. 465-475
-
-
Reuland, P.1
Felderhof, B.2
Jones, R.3
-
25
-
-
0003061782
-
Many-sphere hydrodynamic interactions and mobilities in a suspension
-
10.1016/0378-4371(82)90127-3
-
P. Mazur and W. van Saarloos, " Many-sphere hydrodynamic interactions and mobilities in a suspension.," Physica A 115, 21-57 (1982). 10.1016/0378-4371(82)90127-3
-
(1982)
Physica A
, vol.115
, pp. 21-57
-
-
Mazur, P.1
Van Saarloos, W.2
-
26
-
-
0342520429
-
Macromolecular diffusion constants: A calculational strategy
-
10.1063/1.449283
-
R. F. Goldstein, " Macromolecular diffusion constants: A calculational strategy.," J. Chem. Phys. 83, 2390-2397 (1985). 10.1063/1.449283
-
(1985)
J. Chem. Phys.
, vol.83
, pp. 2390-2397
-
-
Goldstein, R.F.1
-
27
-
-
84985734010
-
Transport properties and hydrodynamic centers of rigid macromolecules with arbitrary shapes
-
10.1002/bi1980.360190404
-
J. M. García Bernal and J. García de la Torre, " Transport properties and hydrodynamic centers of rigid macromolecules with arbitrary shapes.," Biopolymers 19, 751-766 (1980). 10.1002/bip.1980. 360190404
-
(1980)
Biopolymers
, vol.19
, pp. 751-766
-
-
García Bernal, J.M.1
García De La Torre, J.2
-
28
-
-
36749114754
-
Effects from bead size and hydrodynamic interactions on the translational and rotational coefficients of macromolecular bead models
-
10.1063/1.446054
-
J. García de la Torre and V. Rodes, " Effects from bead size and hydrodynamic interactions on the translational and rotational coefficients of macromolecular bead models.," J. Chem. Phys. 79, 2454-2460 (1983). 10.1063/1.446054
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 2454-2460
-
-
García De La Torre, J.1
Rodes, V.2
-
29
-
-
0035951175
-
Building hydrodynamic bead-shell models for rigid bioparticles of arbitrary shape
-
10.1016/S0301-4622(01)00244-7
-
J. García de la Torre, " Building hydrodynamic bead-shell models for rigid bioparticles of arbitrary shape.," Biophys. Chem. 94, 265-274 (2001). 10.1016/S0301-4622(01)00244-7
-
(2001)
Biophys. Chem.
, vol.94
, pp. 265-274
-
-
García De La Torre, J.1
-
30
-
-
33847065474
-
Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles
-
10.1021/jp0647941
-
J. García de la Torre, G. del Rio Echenique, and A. Ortega, " Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles.," J. Phys. Chem. B 111, 955-961 (2007). 10.1021/jp0647941
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 955-961
-
-
García De La Torre, J.1
Del Rio Echenique, G.2
Ortega, A.3
-
31
-
-
0032827044
-
Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres
-
10.1007/s002490050233
-
B. Carrasco, J. García de la Torre, and P. Zipper, " Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres.," Eur. Biophys. J. 28, 510-515 (1999). 10.1007/s002490050233
-
(1999)
Eur. Biophys. J.
, vol.28
, pp. 510-515
-
-
Carrasco, B.1
García De La Torre, J.2
Zipper, P.3
-
32
-
-
80052395891
-
Comparison of Brownian dynamics algorithms with hydrodynamic interaction
-
10.1063/1.3626868
-
R. R. Schmidt, J. G. Hernández Cifre, and J. García de la Torre, " Comparison of Brownian dynamics algorithms with hydrodynamic interaction.," J. Chem. Phys. 135, 084116 (2011). 10.1063/1.3626868
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 084116
-
-
Schmidt, R.R.1
Hernández Cifre, J.G.2
García De La Torre, J.3
|