Arsenic dissolution from Japanese paddy soil by a dissimilatory arsenate-reducing bacterium geobacter sp. OR-1

Environmental Science and Technology

Volumn 47, Issue 12, 2013, Pages 6263-6271

  Ohtsuka, Toshihiko ^a   Yamaguchi, Noriko ^b   Makino, Tomoyuki ^b   Sakurai, Kazuhiro ^a   Kimura, Kenta ^a   Kudo, Keitaro ^a   Homma, Eri ^a   Dong, Dian Tao ^a   Amachi, Seigo ^a  

^a CHIBA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARSENATE REDUCTASE; ARSENATE REDUCTIONS; ARSENIC DISSOLUTION; ARSENIC RELEASE; ELECTRON ACCEPTOR; FERRIHYDRITES; PURE CULTURE; X-RAY ABSORPTION NEAR-EDGE STRUCTURE;

ANOXIC SEDIMENTS; BACTERIA; DISSOLUTION; SOILS;

ARSENIC;

ARSENIC; ARSENIC ACID;

ADSORPTION; ANOXIC SEDIMENT; ARSENIC; CATALYSIS; DISSOLUTION; INOCULATION; MICROBIAL ACTIVITY; PADDY FIELD; SOLUBILITY;

ABSORPTION; ARTICLE; BACTERIAL STRAIN; DISSOLUTION; GEOBACTER METALLIREDUCENS; HYPOTHESIS; INOCULATION; JAPANESE; NONHUMAN; SEDIMENT; SOIL; STRUCTURE ANALYSIS;

ARSENIC; FERRIC COMPOUNDS; GEOBACTER; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); GEOBACTER; GEOBACTER METALLIREDUCENS GS-15; GEOBACTER PELOPHILUS; GEOBACTER SP.;

EID: 84879234934     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es400231x     Document Type: Article

References (55)

1. Smedley, P. L.; Kinniburgh, D. G. A review of the source, behaviour and distribution of arsenic in natural waters Appl. Geochem. 2002, 17, 517-568
2. Ng, J. C.; Wang, J.; Shraim, A. A global health problem caused by arsenic from natural sources Chemosphere 2003, 52, 1353-1359
3. Goldberg, S. Competitive adsorption of arsenate and arsenite on oxides and clay minerals Soil Sci. Soc. Am. J. 2002, 66, 413-421
4. Manning, B. A.; Fendorf, S. E.; Bostick, B.; Suarez, D. L. Arsenic(III) oxidation and arsenic(V) adsorption reactions on synthetic birnessite Environ. Sci. Technol. 2002, 36, 976-981
5. Dixit, S.; Hering, J. G. Comparison of arsenic(V) and arsenic(III) sorption onto iron oxide minerals: Implications for arsenic mobility Environ. Sci. Technol. 2003, 37, 4182-4189
6. Meharg, A. A.; Jardine, L. Arsenite transport into paddy rice (Oryza sativa) roots New Phytol. 2003, 157, 39-44
7. Meharg, A. A. Arsenic in rice-understanding a new disaster for South-East Asia Trends Plant Sci. 2004, 9, 415-417
8. Williams, P. N.; Islam, M. R.; Adomako, E. E.; Raab, A.; Hossain, S. A.; Zhu, Y. G.; Feldmann, J.; Meharg, A. A. Increase in rice grain arsenic for regions of Bangladesh irrigating paddies with elevated arsenic in groundwaters Environ. Sci. Technol. 2006, 40, 4903-4908
9. Takahashi, Y.; Minamikawa, R.; Hattori, K. H.; Kurishima, K.; Kihou, N.; Yuita, K. Arsenic behavior in paddy fields during the cycle of flooded and non-flooded periods Environ. Sci. Technol. 2004, 38, 1038-1044
10. Arao, T.; Kawasaki, A.; Baba, K.; Mori, S.; Matsumoto, S. Effects of water management on cadmium and arsenic accumulation and dimethylarsinic acid concentrations in Japanese rice Environ. Sci. Technol. 2009, 43, 9361-9367
11. Mondal, D.; Polya, D. A. Rice is a major exposure route for arsenic in Chakdaha block, Nadia district, West Bengal, India: A probabilistic risk assessment Appl. Geochem. 2008, 23, 2987-2998
12. Yamane, T.; Yamaji, T.; Takami, Y. Mechanism of rice plant injury in arsenic contaminated paddy soils and its preventive measures. I. Influence of arsenite and arsenate in growth media on the nutrient uptake, growth and yield of rice plant Bull. Shimane Agr. Exp. 1976, 14, 1-17 (in Japanese)
13. Oremland, R. S.; Stolz, J. F. Arsenic, microbes and contaminated aquifers Trends Microbiol. 2005, 13, 45-49
14. Cummings, D. E.; Caccavo, F., Jr.; Fendorf, S.; Rosenzweig, R. F. Arsenic mobilization by the dissimilatory Fe(III)-reducing bacterium Shewanella alga BrY Environ. Sci. Technol. 1999, 33, 723-729
15. Islam, F. S.; Gault, A. G.; Boothman, C.; Polya, D. A.; Charnock, J. M.; Chatterjee, D.; Lloyd, J. R. Role of metal-reducing bacteria in arsenic release from Bengal delta sediments Nature 2004, 430, 68-71
16. Ahmann, D.; Krumholz, L. R.; Hemond, H. F.; Lovley, D. R.; Morel, F. M. M. Microbial mobilization of arsenic from sediments of the Aberjona Watershed Environ. Sci. Technol. 1997, 31, 2923-2930
17. Zobrist, J.; Dowdle, P. R.; Davis, J. A.; Oremland, R. S. Mobilization of arsenite by dissimilatory reduction of adsorbed arsenate Environ. Sci. Technol. 2000, 34, 4747-4753
18. Stolz, J. F.; Basu, P.; Santini, J. M.; Oremland, R. S. Arsenic and selenium in microbial metabolism Annu. Rev. Microbiol. 2006, 60, 107-130
19. Krafft, T.; Macy, J. M. Purification and characterization of the respiratory arsenate reductase of Chrysiogenes arsenatis Eur. J. Biochem. 1998, 255, 647-653
20. Saltikov, C. W.; Newman, D. K. Genetic identification of a respiratory arsenate reductase Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 10983-10988
21. Héry, M.; van Dongen, B. E.; Gill, F.; Mondal, D.; Vaughan, D. J.; Pancost, R. R.; Polya, D. A.; Lloyd, J. R. Arsenic release and attenuation in low organic carbon aquifer sediments from West Bengal Geobiology 2010, 8, 155-168
22. Lear, G.; Song, B.; Gault, A. G.; Polya, D. A.; Lloyd, J. R. Molecular analysis of arsenate-reducing bacteria within Cambodian sediments following amendment with acetate Appl. Environ. Microbiol. 2007, 73, 1041-1048
23. Islam, F. S.; Pederick, R. L.; Gault, A. G.; Adams, L. K.; Polya, D. A.; Charnock, J. M.; Lloyd, J. R. Interactions between the Fe(III)-reducing bacterium Geobacter sulfurreducens and arsenate, and capture of the metalloid by biogenic Fe(II) Appl. Environ. Microbiol. 2005, 71, 8642-8648
24. Giloteaux, L.; Holmes, D. E.; Williams, K. H.; Wrighton, K. C.; Wilkins, M. L.; Montgomery, A. P.; Smith, J. A.; Orellana, R.; Thompson, C. A.; Roper, T. J.; Long, P. E.; Lovley, D. R. Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation IJME J. 2013, 7, 370-383
25. Yamaguchi, N.; Nakamura, T.; Dong, D.; Takahashi, Y.; Amachi, S.; Makino, T. Arsenic release from flooded paddy soils is influenced by speciation, Eh, pH, and iron dissolution Chemosphere 2011, 83, 925-932
26. Miller, T. L.; Wolin, M. J. A serum bottle modification of the Hungate technique for cultivating obligate anaerobes Appl. Microbiol. 1974, 27, 985-987
27. Schwertmann, U.; Cornell, R. M. Ferrihydrite. In Iron Oxides in the Laboratory Preparation and Characterization; Wiley-VCH: Weinheim, Germany, 2000.
28. Lovley, D. R.; Phillips, E. J. Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal Potomac River Appl. Environ. Microbiol. 1986, 52, 751-757
29. Hiraishi, A. Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification Lett. Appl. Microbiol. 1992, 15, 210-213
30. Weisburg, W. G.; Barns, S. M.; Pelletier, D. A.; Lane, D. J. 16S ribosomal DNA amplification for phylogenetic study J. Bacteriol. 1991, 173, 697-703
31. Saito, N.; Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees Mol. Biol. Evol. 1987, 4, 406-425
32. Muyzer, G.; de Waal, E. C.; Uitterlinden, A. G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl. Environ. Microbiol. 1993, 59, 695-700
33. Suda, W.; Oto, M.; Amachi, S.; Shinoyama, H.; Shishido, M. A direct method to isolate DNA from phyllosphere microbial communities without disrupting leaf tissues Microbes Environ. 2008, 23, 248-252
34. Song, B.; Chyun, E.; Jaffé, P. R.; Ward, B. B. Molecular methods to detect and monitor dissimilatory arsenate-respiring bacteria (DARB) in sediments FEMS Microbiol. Ecol. 2009, 68, 108-117
35. Malasarn, D.; Saltikov, C. W.; Campbell, K. M.; Santini, J. M.; Hering, J. G.; Newman, D. K. arrA is a reliable marker for As(V) respiration Science 2004, 306, 455
36. Fisher, E.; Dawson, A. M.; Polshyna, G.; Lisak, J.; Crable, B.; Perera, E.; Ranganathan, M.; Thangavelu, M.; Basu, P.; Stolz, J. F. Transformation of inorganic and organic arsenic by Alkaliphilus oremlandii sp. nov. strain OhILAs Ann. N. Y. Acad. Sci. 2008, 1125, 230-241
37. Rowland, H. A. L.; Pederick, R. L.; Polya, D. A.; Pancost, R. D.; van Dongen, B. E.; Gault, A. G.; Vaughan, D. J.; Bryant, C.; Anderson, B.; Lloyd, J. R. The control of organic matter on microbially mediated iron reduction and arsenic release in shallow alluvial aquifers, Cambodia Geobiology 2007, 5, 281-292
38. Barringer, J. L.; Mumford, A.; Young, L. Y.; Reilly, P. A.; Bonin, J. L.; Rosman, R. Pathways for arsenic from sediments to groundwater to streams: Biogeochemical processes in the Inner Coastal Plain, New Jersey, USA Water Res. 2010, 44, 5532-5544
39. Lovley, D. R.; Ueki, T.; Zhang, T.; Malvankar, N. S.; Shrestha, P. M.; Flanagan, K. A.; Aklujkar, M.; Butler, J. E.; Giloteaux, L.; Rotaru, A.-E.; Holmes, D. E.; Franks, A. E.; Orellana, R.; Risso, C.; Nevin, K. P. Geobacter: The microbe electric's physiology, ecology, and practical applications Adv. Microb. Physiol. 2011, 59, 1-100
40. Islam, F. S.; Microbial controls on the geochemical behavior of arsenic in groundwater system. In Arsenic Contamination of Groundwater: Mechanism, Analysis, and Remediation; Ahuja, S., Ed.; John Wiley and Sons: New Jersey, 2008; p 51.
41. Reyes, C.; Geomicrobiology of iron and arsenic in anoxic sediments. In Arsenic Contamination of Groundwater: Mechanism, Analysis, and Remediation; Ahuja, S., Ed.; John Wiley and Sons: New Jersey, 2008; p 123.
42. Straub, K. L.; Buchholz-Cleven, B. E. E. Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria Int. J. Syst. Bacteriol. 2001, 51, 1805-1808
43. Campbell, K. M.; Malasarn, D.; Saltikov, C. W.; Newman, D. K.; Hering, J. G. Simultaneous microbial reduction of iron(III) and arsenic(V) in suspensions of hydrous ferric oxide Environ. Sci. Technol. 2006, 40, 5950-5955
44. Yamamura, S.; Watanabe, M.; Kanzaki, M.; Soda, S.; Ike, M. Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone Environ. Sci. Technol. 2008, 42, 6154-6159
45. Malasarn, D.; Keeffe, J. R.; Newman, D. K. Characterization of the arsenate respiratory reductase from Shewanella sp. strain ANA-3 J. Bacteriol. 2008, 190, 135-142
46. Hoeft, S. E.; Blum, J. S.; Stolz, J. F.; Tabita, F. R.; Witte, B.; King, G. M.; Santini, J. M.; Oremland, R. S. Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor Int. J. Syst. Bacteriol. 2007, 57, 504-512
47. Kulp, T. R.; Hoeft, S. E.; Asao, M.; Madigan, M. T.; Hollibaugh, J. T.; Fisher, J. C.; Stolz, J. F.; Culbertson, C. W.; Miller, L. G.; Oremland, R. S. Arsenic(III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California Science 2008, 321, 967-970
48. Zargar, K.; Hoeft, S.; Oremland, R.; Saltikov, C. W. Identification of a novel arsenite oxidase gene, arxA, in the haloalkaliphilic, arsenite-oxidizing bacterium Alkalilimnicola ehrlichii strain MLHE-1 J. Bacteriol. 2010, 192, 3755-3762
49. Zargar, K.; Conrad, A.; Bernick, D. L.; Lowe, T. M.; Stolc, V.; Hoeft, S.; Oremland, R. S.; Stolz, J.; Saltikov, C. W. ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases Environ. Microbiol. 2012, 14, 1635-1645
50. Saltikov, C. W.; Wildman, R. A., Jr.; Newman, D. K. Expression dynamics of arsenic respiration and detoxification in Shewanella sp. strain ANA-3 J. Bacteriol. 2005, 187, 7390-7396
51. Reyes, C.; Murphy, J. N.; Saltikov, C. W. Mutational and gene expression analysis of mtrDEF, omcA and mtrCAB during arsenate and iron reduction in Shewanella sp. ANA-3 Environ. Microbiol. 2010, 12, 1878-1888
52. Saltikov, C. W.; Cifuentes, A.; Venkateswaran, K.; Newman, D. K. The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3 Appl. Environ. Microbiol. 2003, 69, 2800-2809
53. Lovley, D. R.; Holmes, D. E.; Nevin, K. P. Dissimilatory Fe(III) and Mn(IV) reduction Adv. Microb. Physiol. 2004, 49, 219-286
54. Lovley, D. R.; Giovannoni, S. J.; White, D. C.; Champine, J. E.; Phillips, E. J. P.; Gorby, Y. A.; Goodwin, S. Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals Arch. Microbiol. 1993, 159, 336-344
55. Aklujkar, M.; Krushkal, J.; DiBartolo, G.; Lapidus, A.; Land, M. L.; Lovley, D. R. The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurredunces BMC Microbiol. 2009, 9, 109