-
1
-
-
0037256419
-
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling
-
Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell, 15, 63-78.
-
(2003)
Plant Cell
, vol.15
, pp. 63-78
-
-
Abe, H.1
Urao, T.2
Ito, T.3
Seki, M.4
Shinozaki, K.5
Yamaguchi-Shinozaki, K.6
-
2
-
-
21044441648
-
Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis
-
Allemeersch, J., Durinck, S., Vanderhaeghen, R., et al. (2005) Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol. 137, 588-601.
-
(2005)
Plant Physiol.
, vol.137
, pp. 588-601
-
-
Allemeersch, J.1
Durinck, S.2
Vanderhaeghen, R.3
-
3
-
-
77951982754
-
A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence
-
Balazadeh, S., Siddiqui, H., Allu, A.D., Matallana-Ramirez, L.P., Caldana, C., Mehrnia, M., Zanor, M.I., Kohler, B., and, Mueller-Roeber, B., (2010) A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant J. 62, 250-264.
-
(2010)
Plant J.
, vol.62
, pp. 250-264
-
-
Balazadeh, S.1
Siddiqui, H.2
Allu, A.D.3
Matallana-Ramirez, L.P.4
Caldana, C.5
Mehrnia, M.6
Zanor, M.I.7
Kohler, B.8
Mueller-Roeber, B.9
-
4
-
-
3843067588
-
TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana
-
Baudry, A., Heim, M.A., Dubreucq, B., Caboche, M., Weisshaar, B., and, Lepiniec, L., (2004) TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 39, 366-380.
-
(2004)
Plant J.
, vol.39
, pp. 366-380
-
-
Baudry, A.1
Heim, M.A.2
Dubreucq, B.3
Caboche, M.4
Weisshaar, B.5
Lepiniec, L.6
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and, Hochberg, Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. 57, 289-300.
-
(1995)
J. Roy. Stat. Soc.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
0034489893
-
Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis
-
Borevitz, J.O., Xia, Y., Blount, J., Dixon, R.A., and, Lamb, C., (2000) Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell, 12, 2383-2394.
-
(2000)
Plant Cell
, vol.12
, pp. 2383-2394
-
-
Borevitz, J.O.1
Xia, Y.2
Blount, J.3
Dixon, R.A.4
Lamb, C.5
-
7
-
-
78751513159
-
A stele-enriched gene regulatory network in the Arabidopsis root
-
Brady, S.M., Zhang, L., Megraw, M., et al. (2011) A stele-enriched gene regulatory network in the Arabidopsis root. Mol. Syst. Biol. 7, 459.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 459
-
-
Brady, S.M.1
Zhang, L.2
Megraw, M.3
-
8
-
-
79955626693
-
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation
-
Breeze, E., Harrison, E., McHattie, S., et al. (2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, 23, 873-894.
-
(2011)
Plant Cell
, vol.23
, pp. 873-894
-
-
Breeze, E.1
Harrison, E.2
McHattie, S.3
-
9
-
-
46749097571
-
Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses
-
Bu, Q., Jiang, H., Li, C.-B., Zhai, Q., Zhang, J., Wu, X., Sun, J., Xie, Q., and, Li, C., (2008) Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses. Cell Res. 18, 756-767.
-
(2008)
Cell Res.
, vol.18
, pp. 756-767
-
-
Bu, Q.1
Jiang, H.2
Li, C.-B.3
Zhai, Q.4
Zhang, J.5
Wu, X.6
Sun, J.7
Xie, Q.8
Li, C.9
-
10
-
-
79959595405
-
Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors
-
Castrillo, G., Turck, F., Leveugle, M., Lecharny, A., Carbonero, P., Coupland, G., Paz-Ares, J., and, Onãte-Sànchez, L., (2011) Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PLoS ONE, 6, e21524.
-
(2011)
PLoS ONE
, vol.6
-
-
Castrillo, G.1
Turck, F.2
Leveugle, M.3
Lecharny, A.4
Carbonero, P.5
Coupland, G.6
Paz-Ares, J.7
Onãte-Sànchez, L.8
-
11
-
-
84866044239
-
MEDIATOR25 Acts as an integrative hub for the regulation of Jasmonate-responsive gene expression in Arabidopsis
-
Çevik, V., Kidd, B.N., Zhang, P., et al. (2012) MEDIATOR25 Acts as an integrative hub for the regulation of Jasmonate-responsive gene expression in Arabidopsis. Plant Physiol. 160, 541-535.
-
(2012)
Plant Physiol.
, vol.160
, pp. 541-535
-
-
Çevik, V.1
Kidd, B.N.2
Zhang, P.3
-
12
-
-
2342477828
-
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana
-
Denby, K.J., Kumar, P., and, Kliebenstein, D.J., (2004) Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana. Plant J. 38, 473-486.
-
(2004)
Plant J.
, vol.38
, pp. 473-486
-
-
Denby, K.J.1
Kumar, P.2
Kliebenstein, D.J.3
-
13
-
-
34547147926
-
Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae
-
Dobi, K.C., and, Winston, F., (2007) Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae. Mol. Cell. Biol. 27, 5575-5586.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 5575-5586
-
-
Dobi, K.C.1
Winston, F.2
-
14
-
-
0036081355
-
Gene expression omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M., and, Lash, A.E., (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
15
-
-
0035983849
-
In vivo interaction between NPR1 and transcription factor TGA2 leads to salicylic acid-mediated gene activation in Arabidopsis
-
Fan, W., and, Dong, X., (2002) In vivo interaction between NPR1 and transcription factor TGA2 leads to salicylic acid-mediated gene activation in Arabidopsis. Plant Cell, 14, 1377-1389.
-
(2002)
Plant Cell
, vol.14
, pp. 1377-1389
-
-
Fan, W.1
Dong, X.2
-
16
-
-
0035477801
-
Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4
-
Feys, B.J., Moisan, L.J., Newman, M.A., and, Parker, J.E., (2001) Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4. EMBO J. 20, 5400-5411.
-
(2001)
EMBO J.
, vol.20
, pp. 5400-5411
-
-
Feys, B.J.1
Moisan, L.J.2
Newman, M.A.3
Parker, J.E.4
-
17
-
-
4944243432
-
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway
-
Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., Tran, L.-S.P., Yamaguchi-Shinozaki, K., and, Shinozaki, K., (2004) A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39, 863-876.
-
(2004)
Plant J.
, vol.39
, pp. 863-876
-
-
Fujita, M.1
Fujita, Y.2
Maruyama, K.3
Seki, M.4
Hiratsu, K.5
Ohme-Takagi, M.6
Tran, L.-S.P.7
Yamaguchi-Shinozaki, K.8
Shinozaki, K.9
-
18
-
-
0032213180
-
Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression
-
Gilmour, S.J., Zarka, D.G., Stockinger, E.J., Salazar, M.P., Houghton, J.M., and, Thomoashow, M.F., (1998) Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16, 433-442.
-
(1998)
Plant J.
, vol.16
, pp. 433-442
-
-
Gilmour, S.J.1
Zarka, D.G.2
Stockinger, E.J.3
Salazar, M.P.4
Houghton, J.M.5
Thomoashow, M.F.6
-
19
-
-
33646231520
-
AtNAP, a NAC family transcription factor, has an important role in leaf senescence
-
Guo, Y., and, Gan, S., (2006) AtNAP, a NAC family transcription factor, has an important role in leaf senescence. Plant J. 46, 601-612.
-
(2006)
Plant J.
, vol.46
, pp. 601-612
-
-
Guo, Y.1
Gan, S.2
-
20
-
-
0036800907
-
Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis
-
Haake, V., Cook, D., Riechmann, J.L., Pineda, O., Thomashow, M.F., and, Zhang, J.Z., (2002) Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol. 130, 639-648.
-
(2002)
Plant Physiol.
, vol.130
, pp. 639-648
-
-
Haake, V.1
Cook, D.2
Riechmann, J.L.3
Pineda, O.4
Thomashow, M.F.5
Zhang, J.Z.6
-
21
-
-
0037006987
-
Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs
-
Hao, D., Yamasaki, K., Sarai, A., and, Ohme-Takagi, M., (2002) Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs. Biochemistry, 41, 4202-4208.
-
(2002)
Biochemistry
, vol.41
, pp. 4202-4208
-
-
Hao, D.1
Yamasaki, K.2
Sarai, A.3
Ohme-Takagi, M.4
-
22
-
-
0033120343
-
A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis
-
He, Z.H., Cheeseman, I., He, D., and, Kohorn, B.D., (1999) A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis. Plant Mol. Biol. 39, 1189-1196.
-
(1999)
Plant Mol. Biol.
, vol.39
, pp. 1189-1196
-
-
He, Z.H.1
Cheeseman, I.2
He, D.3
Kohorn, B.D.4
-
23
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
-
Higo, K., Ugawa, Y., Iwamoto, M., and, Korenaga, T., (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27, 297-300.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
Korenaga, T.4
-
24
-
-
33748364557
-
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
-
Hu, H., Dai, M., Yao, J., Xiao, B., Li, X., Zhang, Q., and, Xiong, L., (2006) Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc. Natl Acad. Sci. USA, 103, 12987-12992.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12987-12992
-
-
Hu, H.1
Dai, M.2
Yao, J.3
Xiao, B.4
Li, X.5
Zhang, Q.6
Xiong, L.7
-
25
-
-
76549106572
-
The Arabidopsis thaliana NAC transcription factor family: Structure-function relationships and determinants of ANAC019 stress signalling
-
Jensen, M.K., Kjaersgaard, T., Nielsen, M.M., Galberg, P., Petersen, K., O'Shea, C., and, Skriver, K., (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling. Biochem. J. 426, 183-196.
-
(2010)
Biochem. J.
, vol.426
, pp. 183-196
-
-
Jensen, M.K.1
Kjaersgaard, T.2
Nielsen, M.M.3
Galberg, P.4
Petersen, K.5
O'Shea, C.6
Skriver, K.7
-
26
-
-
0041853625
-
MATCHTM: A tool for searching transcription factor binding sites in DNA sequences
-
Kel, A., Gossling, E., and, Reuter, I., (2003) MATCHTM: a tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res. 31, 3576-3579.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3576-3579
-
-
Kel, A.1
Gossling, E.2
Reuter, I.3
-
27
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr, M.K., and, Churchill, G.A., (2001) Experimental design for gene expression microarrays. Biostatistics, 2, 183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
28
-
-
34247200577
-
The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
-
Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., D'Angelo, C., Bornberg-Bauer, E., Kudla, J., and, Harter, K., (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50, 347-363.
-
(2007)
Plant J.
, vol.50
, pp. 347-363
-
-
Kilian, J.1
Whitehead, D.2
Horak, J.3
Wanke, D.4
Weinl, S.5
Batistic, O.6
D'Angelo, C.7
Bornberg-Bauer, E.8
Kudla, J.9
Harter, K.10
-
30
-
-
34547107336
-
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor
-
Libault, M., Wan, J.R., Czechowski, T., Udvardi, M., and, Stacey, G., (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 20, 900-911.
-
(2007)
Mol. Plant Microbe Interact.
, vol.20
, pp. 900-911
-
-
Libault, M.1
Wan, J.R.2
Czechowski, T.3
Udvardi, M.4
Stacey, G.5
-
31
-
-
0032144961
-
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis
-
Liu, Q., Kasuga, M., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and, Shinozaki, K., (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell, 10, 1391-1406.
-
(1998)
Plant Cell
, vol.10
, pp. 1391-1406
-
-
Liu, Q.1
Kasuga, M.2
Abe, H.3
Miura, S.4
Yamaguchi-Shinozaki, K.5
Shinozaki, K.6
-
32
-
-
24044440971
-
BiNGO: A cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere, S., Heymans, K., and, Kuiper, M., (2005) BiNGO: a cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
33
-
-
60249087048
-
MYB108 acts together with MYB24 to regulate jasmonate-mediated stamen maturation in Arabidopsis
-
Mandaokar, A., and, Browse, J., (2009) MYB108 acts together with MYB24 to regulate jasmonate-mediated stamen maturation in Arabidopsis. Plant Physiol. 149, 851-862.
-
(2009)
Plant Physiol.
, vol.149
, pp. 851-862
-
-
Mandaokar, A.1
Browse, J.2
-
34
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
Matys, V., Kel-Margoulis, O.V., Fricke, E., et al. (2006) TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res. 34, D108-D110.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
-
35
-
-
0033080470
-
The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration
-
Medina, J., Bargues, M., Terol, J., Perez-Alonso, M., and, Salinas, J., (1999) The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol. 119, 463-470.
-
(1999)
Plant Physiol.
, vol.119
, pp. 463-470
-
-
Medina, J.1
Bargues, M.2
Terol, J.3
Perez-Alonso, M.4
Salinas, J.5
-
36
-
-
0344945671
-
The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis
-
Mengiste, T., Chen, X., Salmeron, J., and, Dietrich, R., (2003) The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis. Plant Cell, 15, 2551-2565.
-
(2003)
Plant Cell
, vol.15
, pp. 2551-2565
-
-
Mengiste, T.1
Chen, X.2
Salmeron, J.3
Dietrich, R.4
-
37
-
-
78651295069
-
Efficient yeast one-/two-hybrid screening using a library composed only of transcription factors in Arabidopsis thaliana
-
Mitsuda, N., Ikeda, M., Takada, S., Takiguchi, Y., Kondou, Y., Yoshizumi, T., Fujita, M., Shinozaki, K., Matsui, M., and, Ohme-Takagi, M., (2010) Efficient yeast one-/two-hybrid screening using a library composed only of transcription factors in Arabidopsis thaliana. Plant Cell Physiol. 51, 2145-2151.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 2145-2151
-
-
Mitsuda, N.1
Ikeda, M.2
Takada, S.3
Takiguchi, Y.4
Kondou, Y.5
Yoshizumi, T.6
Fujita, M.7
Shinozaki, K.8
Matsui, M.9
Ohme-Takagi, M.10
-
38
-
-
84856594358
-
NAC transcription factors in plant abiotic stress responses
-
Nakashima, K., Takasaki, H., Mizoi, J., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2012) NAC transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta, 1819, 97-103.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 97-103
-
-
Nakashima, K.1
Takasaki, H.2
Mizoi, J.3
Shinozaki, K.4
Yamaguchi-Shinozaki, K.5
-
39
-
-
0036801544
-
Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes
-
Niu, X., Helentjaris, T., and, Bate, N.J., (2002) Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes. Plant Cell, 14, 2565-2575.
-
(2002)
Plant Cell
, vol.14
, pp. 2565-2575
-
-
Niu, X.1
Helentjaris, T.2
Bate, N.J.3
-
40
-
-
10744233719
-
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana
-
Ooka, H., Satoh, K., Doi, K., et al. (2003) Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 10, 239-247.
-
(2003)
DNA Res.
, vol.10
, pp. 239-247
-
-
Ooka, H.1
Satoh, K.2
Doi, K.3
-
41
-
-
79957465982
-
A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation
-
Ou, B., Yin, K.-Q., Liu, S.-N., et al. (2011) A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol. Plant, 4, 546-555.
-
(2011)
Mol. Plant
, vol.4
, pp. 546-555
-
-
Ou, B.1
Yin, K.-Q.2
Liu, S.-N.3
-
42
-
-
62849112771
-
Isolation and functional characterization of the Arabidopsis salt-tolerance 32 (AtSAT32) gene associated with salt tolerance and ABA signaling
-
Park, M.Y., Chung, M.S., Koh, H.S., Lee, D.J., Ahn, S.J., and, Kim, C.S., (2009) Isolation and functional characterization of the Arabidopsis salt-tolerance 32 (AtSAT32) gene associated with salt tolerance and ABA signaling. Physiol. Plant. 135, 426-435.
-
(2009)
Physiol. Plant.
, vol.135
, pp. 426-435
-
-
Park, M.Y.1
Chung, M.S.2
Koh, H.S.3
Lee, D.J.4
Ahn, S.J.5
Kim, C.S.6
-
43
-
-
84859149116
-
How to infer gene networks from expression profiles, revisited
-
Penfold, C.A., and, Wild, D.L., (2011) How to infer gene networks from expression profiles, revisited. Interface Focus, 1, 857-870.
-
(2011)
Interface Focus
, vol.1
, pp. 857-870
-
-
Penfold, C.A.1
Wild, D.L.2
-
44
-
-
84863518591
-
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
-
Penfold, C.A., Buchanan-Wollaston, V., Denby, K.J., and, Wild, D.L., (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, 28, i223-i241.
-
(2012)
Bioinformatics
, vol.28
-
-
Penfold, C.A.1
Buchanan-Wollaston, V.2
Denby, K.J.3
Wild, D.L.4
-
45
-
-
62449114708
-
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock
-
Pruneda-Paz, J.L., Breton, G., Para, A., and, Kay, S.A., (2009) A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science, 323, 1481-1485.
-
(2009)
Science
, vol.323
, pp. 1481-1485
-
-
Pruneda-Paz, J.L.1
Breton, G.2
Para, A.3
Kay, S.A.4
-
46
-
-
84861894223
-
NAC proteins: Regulation and role in stress tolerance
-
Puranik, S., Sahu, P.P., Srivastava, P.S., and, Prasad, M., (2012) NAC proteins: regulation and role in stress tolerance. Trends Plant Sci. 17, 369-381.
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 369-381
-
-
Puranik, S.1
Sahu, P.P.2
Srivastava, P.S.3
Prasad, M.4
-
47
-
-
0034671865
-
Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
-
Riechmann, J., Heard, J., Martin, G., et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 290, 2105-2110.
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.1
Heard, J.2
Martin, G.3
-
48
-
-
0036290601
-
DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold- inducible gene expression
-
Sakuma, Y., Liu, Q., Dubouzet, J.G., Abe, H., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold- inducible gene expression. Biochem. Biophys. Res. Commun. 290, 998-1009.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.290
, pp. 998-1009
-
-
Sakuma, Y.1
Liu, Q.2
Dubouzet, J.G.3
Abe, H.4
Shinozaki, K.5
Yamaguchi-Shinozaki, K.6
-
49
-
-
33747148869
-
CYP71B15 (PAD3) catalyzes the final step in camalexin biosynthesis
-
Schuhegger, R., Nafisi, M., Mansourova, M., Petersen, B.L., Olsen, C.E., Svatos, A., Halkier, B.A., and, Glawischnig, E., (2006) CYP71B15 (PAD3) catalyzes the final step in camalexin biosynthesis. Plant Physiol. 141, 1248-1254.
-
(2006)
Plant Physiol.
, vol.141
, pp. 1248-1254
-
-
Schuhegger, R.1
Nafisi, M.2
Mansourova, M.3
Petersen, B.L.4
Olsen, C.E.5
Svatos, A.6
Halkier, B.A.7
Glawischnig, E.8
-
50
-
-
0029009662
-
Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrid
-
Solano, R., Nieto, C., Avila, J., Canas, L., Diaz, I., and, Paz-Ares, J., (1995) Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrid. EMBO J. 14, 1773-1784.
-
(1995)
EMBO J.
, vol.14
, pp. 1773-1784
-
-
Solano, R.1
Nieto, C.2
Avila, J.3
Canas, L.4
Diaz, I.5
Paz-Ares, J.6
-
51
-
-
77950803115
-
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series
-
Stegle, O., Denby, K.J., Cooke, E.J., Wild, D.L., Ghahramani, Z., and, Borgwardt, K.M., (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. J. Comput. Biol. 17, 355-367.
-
(2010)
J. Comput. Biol.
, vol.17
, pp. 355-367
-
-
Stegle, O.1
Denby, K.J.2
Cooke, E.J.3
Wild, D.L.4
Ghahramani, Z.5
Borgwardt, K.M.6
-
52
-
-
0034871530
-
The R2R3-MYB gene family in Arabidopsis thaliana
-
Stracke, R., Werber, M., and, Weisshaar, B., (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol. 4, 447-456.
-
(2001)
Curr. Opin. Plant Biol.
, vol.4
, pp. 447-456
-
-
Stracke, R.1
Werber, M.2
Weisshaar, B.3
-
53
-
-
0033213398
-
Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: A tool for functional genomics
-
Tissier, A.F., Marillonnet, S., Klimyuk, V., Patel, K., Torres, M.A., Murphy, G., and, Jones, J.D., (1999) Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: A tool for functional genomics. Plant Cell, 11, 1841-1852.
-
(1999)
Plant Cell
, vol.11
, pp. 1841-1852
-
-
Tissier, A.F.1
Marillonnet, S.2
Klimyuk, V.3
Patel, K.4
Torres, M.A.5
Murphy, G.6
Jones, J.D.7
-
54
-
-
4544236638
-
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter
-
Tran, L.-S.P., Nakashima, K., Sakuma, Y., Simpson, S.D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2004) Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell, 16, 2481-2498.
-
(2004)
Plant Cell
, vol.16
, pp. 2481-2498
-
-
Tran, L.-S.P.1
Nakashima, K.2
Sakuma, Y.3
Simpson, S.D.4
Fujita, Y.5
Maruyama, K.6
Fujita, M.7
Seki, M.8
Shinozaki, K.9
Yamaguchi-Shinozaki, K.10
-
55
-
-
12344330424
-
LimmaGUI: A graphical user interface for linear modeling of microarray data
-
Wettenhall, J.M., and, Smyth, G.K., (2004) limmaGUI: a graphical user interface for linear modeling of microarray data. Bioinformatics, 20, 3705-3706.
-
(2004)
Bioinformatics
, vol.20
, pp. 3705-3706
-
-
Wettenhall, J.M.1
Smyth, G.K.2
-
56
-
-
84868288164
-
Arabidopsis defense against Botrytis cinerea: Chronology and regulation deciphered by high-resolution temporal transcriptomic analysis
-
Windram, O., Madhou, P., McHattie, S., et al. (2012) Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. Plant Cell, 24, 3530-3557.
-
(2012)
Plant Cell
, vol.24
, pp. 3530-3557
-
-
Windram, O.1
Madhou, P.2
McHattie, S.3
-
57
-
-
40349091686
-
An "electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets
-
Winter, D., Vinegar, B., Nahal, H., Ammar, R., Wilson, G.V., and, Provart, N.J., (2007) An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE, 2, e718.
-
(2007)
PLoS ONE
, vol.2
-
-
Winter, D.1
Vinegar, B.2
Nahal, H.3
Ammar, R.4
Wilson, G.V.5
Provart, N.J.6
-
58
-
-
76449117506
-
AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation
-
Yoshida, T., Fujita, Y., Sayama, H., Kidokoro, S., Maruyama, K., Mizoi, J., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2010) AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J. 61, 672-685.
-
(2010)
Plant J.
, vol.61
, pp. 672-685
-
-
Yoshida, T.1
Fujita, Y.2
Sayama, H.3
Kidokoro, S.4
Maruyama, K.5
Mizoi, J.6
Shinozaki, K.7
Yamaguchi-Shinozaki, K.8
-
59
-
-
84862285298
-
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation
-
Zheng, X.Y., Spivey, N.W., Zeng, W., Liu, P.P., Fu, Z.Q., Klessig, D.F., He, S.Y., and, Dong, X., (2012) Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 11, 587-596.
-
(2012)
Cell Host Microbe
, vol.11
, pp. 587-596
-
-
Zheng, X.Y.1
Spivey, N.W.2
Zeng, W.3
Liu, P.P.4
Fu, Z.Q.5
Klessig, D.F.6
He, S.Y.7
Dong, X.8
-
60
-
-
80052576152
-
Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana
-
Zou, C., Sun, K., Mackaluso, J.D., Seddon, A.E., Jin, R., Thomashow, M.F., and, Shiu, S.-H., (2011) Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 108, 14992-14997.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 14992-14997
-
-
Zou, C.1
Sun, K.2
Mackaluso, J.D.3
Seddon, A.E.4
Jin, R.5
Thomashow, M.F.6
Shiu, S.-H.7
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