Ethnic diversity of gut microbiota: Species characterization of Bacteroides fragilis group and genus Bifidobacterium in healthy Belgian adults, and comparison with data from Japanese subjects

Journal of Bioscience and Bioengineering

Volumn 116, Issue 2, 2013, Pages 265-270

  Ishikawa, Eiji ^a,b   Matsuki, Takahiro ^a   Kubota, Hiroyuki ^b   Makino, Hiroshi ^b   Sakai, Takafumi ^b   Oishi, Kenji ^b   Kushiro, Akira ^a,b   Fujimoto, Junji ^a   Watanabe, Koichi ^a   Watanuki, Masaaki ^a,b   Tanaka, Ryuichiro ^a,b  

^a YAKULT CENTRAL INSTITUTE FOR MICROBIOLOGICAL RESEARCH   (Japan)

^b Yakult Honsha European Research Center for Microbiology ESV   (Belgium)

Author keywords

Bifidobacterium catenulatum group; Dietary habit; Microbiota structure; Quantitative PCR; Species level

Indexed keywords

BIFIDOBACTERIUM; DIETARY HABIT; MICROBIOTAS; QUANTITATIVE PCR; SPECIES-LEVEL;

POLYMERASE CHAIN REACTION; POPULATION STATISTICS;

BACTERIA;

ADULT; ARTICLE; BACTERIAL STRAIN; BACTEROIDES FRAGILIS; BACTEROIDES VULGATUS; BELGIUM; BIFIDOBACTERIUM; BIFIDOBACTERIUM ADOLESCENTIS; BIFIDOBACTERIUM LONGUM; CONTROLLED STUDY; ETHNIC DIFFERENCE; ETHNIC GROUP; FECES ANALYSIS; FEMALE; HUMAN; HUMAN EXPERIMENT; INTESTINE FLORA; JAPANESE; MALE; POPULATION SIZE; PREVALENCE; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SPECIES DIFFERENTIATION;

ADULT; ASIAN CONTINENTAL ANCESTRY GROUP; BACTERIA; BACTEROIDES; BACTEROIDES FRAGILIS; BELGIUM; BIFIDOBACTERIUM; EUROPEAN CONTINENTAL ANCESTRY GROUP; FEMALE; GASTROINTESTINAL TRACT; HUMANS; JAPAN; MALE; MICROBIOTA; MIDDLE AGED; POLYMERASE CHAIN REACTION; YOUNG ADULT;

BACTERIA (MICROORGANISMS); BACTEROIDES FRAGILIS; BACTEROIDES OVATUS; BACTEROIDES UNIFORMIS; BACTEROIDES VULGATUS; BIFIDOBACTERIUM; BIFIDOBACTERIUM ADOLESCENTIS; BIFIDOBACTERIUM CATENULATUM; BIFIDOBACTERIUM LONGUM;

EID: 84879122910     PISSN: 13891723     EISSN: 13474421     Source Type: Journal    
DOI: 10.1016/j.jbiosc.2013.02.010     Document Type: Article

References (24)

1. Zhu B., Wang X., Li L. Human gut microbiome: the second genome of human body. Protein Cell 2010, 1:718-725.
2. Ivanov I.I., Littman D.R. Modulation of immune homeostasis by commensal bacteria. Curr. Opin. Microbiol. 2011, 14:106-114.
3. Bäckhed F., Ley R.E., Sonnenburg J.L., Peterson D.A., Gordon J.I. Host-bacterial mutualism in the human intestine. Science 2005, 307:1915-1920.
4. Pelissier M.A., Vasquez N., Balamurugan R., Pereira E., Dossou-Yovo F., Suau A., Pochart P., Magne F. Metronidazole effects on microbiota and mucus layer thickness in the rat gut. FEMS Microbiol. Ecol. 2010, 73:601-610.
5. van den Bogert B., de Vos W.M., Zoetendal E.G., Kleerebezem M. Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl. Environ. Microbiol. 2011, 77:2071-2080.
6. Vaughan E.E., de Vries M.C., Zoetendal E.G., Ben-Amor K., Akkermans A.D., de Vos W.M. The intestinal LABs. Antonie Van Leeuwenhoek 2002, 82:341-352.
7. Vaughan E.E., Heilig H.G., Ben-Amor K., de Vos W.M. Diversity, vitalityand activities of intestinal lactic acid bacteria and bifidobacteria assessed by molecular approaches. FEMS Microbiol. Rev. 2005, 29:477-490.
8. Neyrinck A.M., Possemiers S., Druart C., Van de Wiele T., De Backer F., Cani P.D., Larondelle Y., Delzenne N.M. Prebiotic effects of wheat arabinoxylan related to the increase in bifidobacteria, roseburia and bacteroides/prevotella in diet-induced obese mice. PLoS One 2011, 6:e20944.
9. Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
10. Matsuki T., Watanabe K., Fujimoto J., Miyamoto Y., Takada T., Matsumoto K., Oyaizu H., Tanaka R. Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces. Appl. Environ. Microbiol. 2002, 68:5445-5451.
11. Matsuki T., Watanabe K., Fujimoto J., Kado Y., Takada T., Matsumoto K., Tanaka R. Quantitative PCR with 16S rRNA-gene-targeted species-specific primers for analysis of human intestinal bifidobacteria. Appl. Environ. Microbiol. 2004, 70:167-173.
12. Matsuki T., Watanabe K., Fujimoto J., Takada T., Tanaka R. Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces. Appl. Environ. Microbiol. 2004, 70:7220-7228.
13. Lay C., Rigottier-Gois L., Holmstrom K., Rajilic M., Vaughan E.E., de Vos W.M., Collins M.D., Thiel R., Namsolleck P., Blaut M., Dore J. Colonic microbiota signatures across five northern European countries. Appl. Environ. Microbiol. 2005, 71:4153-4155.
14. Mueller S., Saunier K., Hanisch C., Norin E., Alm L., Midtvedt T., Cresci A., Silvi S., Orpianesi C., Verdenelli M.C., other 5 authors Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl. Environ. Microbiol. 2006, 72:1027-1033.
15. De Filippo C., Cavalieri D., Di Paola M., Ramazzotti M., Poullet J.B., Massart S., Collini S., Pieraccini G., Lionetti P. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. USA 2010, 107:14691-14696.
16. Yatsunenko T., Rey F.E., Manary M.J., Trehan I., Dominguez-Bello M.G., Contreras M., Magris M., Hidalgo G., Baldassano R.N., Anokhin A.P., other 10 authors Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.
17. Takaishi H., Matsuki T., Nakazawa A., Takada T., Kado S., Asahara T., Kamada N., Sakuraba A., Yajima T., Higuchi H., other 6 authors Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease. Int. J. Med. Microbiol. 2008, 298:463-472.
18. Ririe K.M., Rasmussen R.P., Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 1997, 245:154-160.
19. Dinoto A., Marques T.M., Sakamoto K., Fukiya S., Watanabe J., Ito S., Yokota A. Population dynamics of Bifidobacterium species in human feces during raffinose administration monitored by fluorescence in situ hybridization-flow cytometry. Appl. Environ. Microbiol. 2006, 72:7739-7747.
20. Flint H.J., Bayer E.A., Rincon M.T., Lamed R., White B.A. Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 2008, 6:121-131.
21. Koropatkin N.M., Cameron E.A., Martens E.C. How glycan metabolism shapes the human gut microbiota. Nat. Rev. Microbiol. 2012, 10:323-335.
22. Hehemann J.H., Correc G., Barbeyron T., Helbert W., Czjzek M., Michel G. Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 2010, 464:908-912.
23. Turnbaugh P.J., Hamady M., Yatsunenko T., Cantarel B.L., Duncan A., Ley R.E., Sogin M.L., Jones W.J., Roe B.A., Affourtit J.P., other 5 authors Acore gut microbiome in obese and lean twins. Nature 2009, 457:480-484.
24. Hildebrandt M.A., Hoffmann C., Sherrill-Mix S.A., Keilbaugh S.A., Hamady M., Chen Y.Y., Knight R., Ahima R.S., Bushman F., Wu G.D. High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 2009, 137:1716-1724.