-
1
-
-
76949094947
-
The population genetics of commensal Escherichia coli
-
doi:10.1038/nrmicro2298
-
Tenaillon O, Skurnik D, Picard B, Denamur E, (2010) The population genetics of commensal Escherichia coli. Nat Rev Microbiol 8: 207-217. doi:10.1038/nrmicro2298. PubMed: 20157339.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 207-217
-
-
Tenaillon, O.1
Skurnik, D.2
Picard, B.3
Denamur, E.4
-
2
-
-
0020891851
-
Escherichia-Coli Habitats, Cell-Types, and Molecular Mechanisms of Gene-Control
-
doi:10.1086/284168
-
Savageau MA, (1983) Escherichia-Coli Habitats, Cell-Types, and Molecular Mechanisms of Gene-Control. Am Nat 122: 732-744. doi:10.1086/284168.
-
(1983)
Am Nat
, vol.122
, pp. 732-744
-
-
Savageau, M.A.1
-
3
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
doi:10.1371/journal.pgen.1000344
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLOS Genet 5e67210. doi:10.1371/journal.pgen.1000344. PubMed: 19165319.
-
(2009)
PLOS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
4
-
-
34247526816
-
The role of Escherichia coli in inflammatory bowel disease
-
doi:10.1136/gut.2006.111872
-
Rhodes JM, (2007) The role of Escherichia coli in inflammatory bowel disease. Gut 56610-612:: 610-2. doi:10.1136/gut.2006.111872. PubMed: 17440180.
-
(2007)
Gut
, vol.56
, pp. 610-612
-
-
Rhodes, J.M.1
-
5
-
-
34548483459
-
Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum
-
doi:10.1038/ismej.2007.52
-
Baumgart M, Dogan B, Rishniw M, Weitzman G, Bosworth B, et al. (2007) Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. ISME J 1: 403-418. doi:10.1038/ismej.2007.52. PubMed: 18043660.
-
(2007)
ISME J
, vol.1
, pp. 403-418
-
-
Baumgart, M.1
Dogan, B.2
Rishniw, M.3
Weitzman, G.4
Bosworth, B.5
-
6
-
-
77957603468
-
The role of bacteria in the pathogenesis of inflammatory bowel disease
-
doi:10.5009/gnl.2010.4.3.295
-
Friswell M, Campbell B, Rhodes J, (2010) The role of bacteria in the pathogenesis of inflammatory bowel disease. Gut. Liver 4: 295-306. doi:10.5009/gnl.2010.4.3.295.
-
(2010)
Gut. Liver
, vol.4
, pp. 295-306
-
-
Friswell, M.1
Campbell, B.2
Rhodes, J.3
-
7
-
-
34247500287
-
High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease
-
doi:10.1136/gut.2006.099796
-
Kotlowski R, Bernstein CN, Sepehri S, Krause DO, (2007) High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease. Gut 56: 669-675. doi:10.1136/gut.2006.099796. PubMed: 17028128.
-
(2007)
Gut
, vol.56
, pp. 669-675
-
-
Kotlowski, R.1
Bernstein, C.N.2
Sepehri, S.3
Krause, D.O.4
-
8
-
-
72549107070
-
Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant
-
doi:10.1002/ibd.20966
-
Sepehri S, Kotlowski R, Bernstein CN, Krause DO, (2009) Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant. Inflamm Bowel Dis 15: 1737-1745. doi:10.1002/ibd.20966. PubMed: 19462430.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1737-1745
-
-
Sepehri, S.1
Kotlowski, R.2
Bernstein, C.N.3
Krause, D.O.4
-
9
-
-
79958772364
-
Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease
-
PubMed
-
Vejborg RM, Hancock V, Petersen AM, Krogfelt KA, Klemm P, (2011) Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease. BMC Genomics 12316:: 1186/1471-2164-12-316. PubMed: 21676223.
-
(2011)
BMC Genomics
, vol.12
-
-
Vejborg, R.M.1
Hancock, V.2
Petersen, A.M.3
Krogfelt, K.A.4
Klemm, P.5
-
10
-
-
0034213941
-
The emergence and maintenance of diversity: insights from experimental bacterial populations
-
doi:10.1016/S0169-5347(00)01871-1
-
Rainey PB, Buckling A, Kassen R, Travisano M, (2000) The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends Ecol Evol 15: 243-247. doi:10.1016/S0169-5347(00)01871-1. PubMed: 10802550.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 243-247
-
-
Rainey, P.B.1
Buckling, A.2
Kassen, R.3
Travisano, M.4
-
11
-
-
0000324665
-
Partitioning of Resources and Outcome of Interspecific Competition - Model and Some General Considerations
-
doi:10.1086/282825
-
Stewart FM, Levin BR, (1973) Partitioning of Resources and Outcome of Interspecific Competition- Model and Some General Considerations. Am Nat 107: 171-198. doi:10.1086/282825.
-
(1973)
Am Nat
, vol.107
, pp. 171-198
-
-
Stewart, F.M.1
Levin, B.R.2
-
12
-
-
0019890230
-
Microbial Competition
-
doi:10.1126/science.7268409
-
Fredrickson AG, Stephanopoulos G, (1981) Microbial Competition. Science 213: 972-979. doi:10.1126/science.7268409. PubMed: 7268409.
-
(1981)
Science
, vol.213
, pp. 972-979
-
-
Fredrickson, A.G.1
Stephanopoulos, G.2
-
13
-
-
0027428478
-
Growth kinetics and competition--some contemporary comments
-
doi:10.1007/BF00871225
-
Gottschal JC, (1993) Growth kinetics and competition--some contemporary comments. Antonie Van Leeuwenhoek 63: 299-313. doi:10.1007/BF00871225. PubMed: 8279826.
-
(1993)
Antonie Van Leeuwenhoek
, vol.63
, pp. 299-313
-
-
Gottschal, J.C.1
-
16
-
-
0015513551
-
Coexistence of two asexual strains on a single resource
-
Levin BR, (1972) Coexistence of two asexual strains on a single resource. Science 175: 1272-1274. doi:10.1126/science.175.4027.1272. PubMed: 4551427.
-
(1972)
Science
, vol.175
, pp. 1272-1274
-
-
Levin, B.R.1
-
17
-
-
1542349770
-
When does periodic variation in resource growth allow robust coexistence of competing consumer species?
-
doi:10.1890/02-0684
-
Abrams PA, (2004) When does periodic variation in resource growth allow robust coexistence of competing consumer species? Ecology 85: 372-382. doi:10.1890/02-0684.
-
(2004)
Ecology
, vol.85
, pp. 372-382
-
-
Abrams, P.A.1
-
18
-
-
0035958686
-
Complex species interactions and the dynamics of ecological systems: long-term experiments
-
doi:10.1126/science.293.5530.643
-
Brown JH, Whitham TG, Morgan Ernest SK, Gehring CA, (2001) Complex species interactions and the dynamics of ecological systems: long-term experiments. Science 293: 643-650. doi:10.1126/science.293.5530.643. PubMed: 11474100.
-
(2001)
Science
, vol.293
, pp. 643-650
-
-
Brown, J.H.1
Whitham, T.G.2
Morgan Ernest, S.K.3
Gehring, C.A.4
-
19
-
-
0038699846
-
A review of trait-mediated indirect interactions in ecological communities
-
doi:10.1890/0012-9658(2003)084[1083:AROTII]2.0.CO;2
-
Werner EE, Peacor SD, (2003) A review of trait-mediated indirect interactions in ecological communities. Ecology 84: 1083-1100. doi:10.1890/0012-9658(2003)084[1083:AROTII]2.0.CO;2.
-
(2003)
Ecology
, vol.84
, pp. 1083-1100
-
-
Werner, E.E.1
Peacor, S.D.2
-
20
-
-
0028976107
-
Implications of Dynamically Variable Traits for Identifying, Classifying, and Measuring Direct and Indirect Effects in Ecological Communities
-
doi:10.1086/285789
-
Abrams PA, (1995) Implications of Dynamically Variable Traits for Identifying, Classifying, and Measuring Direct and Indirect Effects in Ecological Communities. Am Nat 146: 112-134. doi:10.1086/285789.
-
(1995)
Am Nat
, vol.146
, pp. 112-134
-
-
Abrams, P.A.1
-
21
-
-
0027456065
-
Intraguild Predation and Competition Between Larval Dragonflies - Direct and Indirect Effects on Shared Prey
-
doi:10.2307/1939515
-
Wissinger S, Mcgrady J, (1993) Intraguild Predation and Competition Between Larval Dragonflies- Direct and Indirect Effects on Shared Prey. Ecology 74: 207-218. doi:10.2307/1939515.
-
(1993)
Ecology
, vol.74
, pp. 207-218
-
-
Wissinger, S.1
Mcgrady, J.2
-
22
-
-
0030613882
-
Trait-mediated indirect interactions in a simple aquatic food web
-
doi:10.1890/0012-9658(1997)078[1146:TMIIIA]2.0.CO;2
-
Peacor SD, Werner EE, (1997) Trait-mediated indirect interactions in a simple aquatic food web. Ecology 78: 1146-1156. doi:10.1890/0012-9658(1997)078[1146:TMIIIA]2.0.CO;2.
-
(1997)
Ecology
, vol.78
, pp. 1146-1156
-
-
Peacor, S.D.1
Werner, E.E.2
-
23
-
-
0033850523
-
Trait-mediated indirect effects in larval anurans: Reversing competition with the threat of predation
-
doi:10.1890/0012-9658(2000)081[2278:TMIEIL]2.0.CO;2
-
Relyea RA, (2000) Trait-mediated indirect effects in larval anurans: Reversing competition with the threat of predation. Ecology 81: 2278-2289. doi:10.1890/0012-9658(2000)081[2278:TMIEIL]2.0.CO;2.
-
(2000)
Ecology
, vol.81
, pp. 2278-2289
-
-
Relyea, R.A.1
-
24
-
-
0032874846
-
Pathogen reverses competition between larval amphibians
-
doi:10.1890/0012-9658(1999)080[2442:PRCBLA]2.0.CO;2
-
Kiesecker JM, Blaustein AR, (1999) Pathogen reverses competition between larval amphibians. Ecology 80: 2442-2448. doi:10.1890/0012-9658(1999)080[2442:PRCBLA]2.0.CO;2.
-
(1999)
Ecology
, vol.80
, pp. 2442-2448
-
-
Kiesecker, J.M.1
Blaustein, A.R.2
-
25
-
-
25144463267
-
Impact of phages on two-species bacterial communities
-
doi:10.1128/AEM.71.9.5254-5259.2005
-
Harcombe WR, Bull JJ, (2005) Impact of phages on two-species bacterial communities. Appl Environ Microbiol 71: 5254-5259. doi:10.1128/AEM.71.9.5254-5259.2005. PubMed: 16151111.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5254-5259
-
-
Harcombe, W.R.1
Bull, J.J.2
-
26
-
-
84985161098
-
Probiotics in Man and Animals
-
doi:10.1111/j.1365-2672.1989.tb05105.x
-
Fuller R, (1989) Probiotics in Man and Animals. J Appl Bacteriol 66: 365-378. doi:10.1111/j.1365-2672.1989.tb05105.x. PubMed: 2666378.
-
(1989)
J Appl Bacteriol
, vol.66
, pp. 365-378
-
-
Fuller, R.1
-
27
-
-
79955966842
-
Diversity, transmission and persistence of Escherichia coli in a cohort of mothers and their infants
-
doi:10.1111/j.1758-2229.2010.00231.x
-
de Muinck EJ, Oien T, Storro O, Johnsen R, Stenseth NC, et al. (2011) Diversity, transmission and persistence of Escherichia coli in a cohort of mothers and their infants. Environ Microbiol Rep 3: 352-359. doi:10.1111/j.1758-2229.2010.00231.x.
-
(2011)
Environ Microbiol Rep
, vol.3
, pp. 352-359
-
-
de Muinck, E.J.1
Oien, T.2
Storro, O.3
Johnsen, R.4
Stenseth, N.C.5
-
28
-
-
84859584769
-
Modelling bacterial transmission in human allergen-specific IgE sensitization
-
doi:10.1111/j.1472-765X.2012.03229.x
-
Rudi K, Storrø O, Oien T, Johnsen R, (2012) Modelling bacterial transmission in human allergen-specific IgE sensitization. Lett Appl Microbiol 54: 447-454. doi:10.1111/j.1472-765X.2012.03229.x. PubMed: 22385401.
-
(2012)
Lett Appl Microbiol
, vol.54
, pp. 447-454
-
-
Rudi, K.1
Storrø, O.2
Oien, T.3
Johnsen, R.4
-
29
-
-
80054033663
-
Temporal variations in early gut microbial colonization are associated with allergen-specific immunoglobulin E but not atopic eczema at 2 years of age
-
doi:10.1111/j.1365-2222.2011.03817.x
-
Storrø O, Øien T, Langsrud Ø, Rudi K, Dotterud C, et al. (2011) Temporal variations in early gut microbial colonization are associated with allergen-specific immunoglobulin E but not atopic eczema at 2 years of age. Clin Exp Allergy 41: 1545-1554. doi:10.1111/j.1365-2222.2011.03817.x. PubMed: 21749499.
-
(2011)
Clin Exp Allergy
, vol.41
, pp. 1545-1554
-
-
Storrø, O.1
Øien, T.2
Langsrud, Ø.3
Rudi, K.4
Dotterud, C.5
-
30
-
-
0028163119
-
Long-Term Experimental Evolution in Escherichia-Coli. Changes in Life-History Traits During Adaptation to A Seasonal Environment
-
doi:10.1086/285685
-
Vasi F, Travisano M, Lenski RE, (1994) Long-Term Experimental Evolution in Escherichia-Coli. Changes in Life-History Traits During Adaptation to A Seasonal Environment. Am Nat 144: 432-456. doi:10.1086/285685.
-
(1994)
Am Nat
, vol.144
, pp. 432-456
-
-
Vasi, F.1
Travisano, M.2
Lenski, R.E.3
-
32
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
doi:10.1073/pnas.0706625104
-
Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, et al. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 104: 13780-13785. doi:10.1073/pnas.0706625104. PubMed: 17699621.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
-
33
-
-
78650616947
-
Toward defining the autoimmune microbiome for type 1 diabetes
-
doi:10.1038/ismej.2010.92
-
Giongo A, Gano KA, Crabb DB, Mukherjee N, Novelo LL, et al. (2011) Toward defining the autoimmune microbiome for type 1 diabetes. Isme J 5: 82-91. doi:10.1038/ismej.2010.92. PubMed: 20613793.
-
(2011)
Isme J
, vol.5
, pp. 82-91
-
-
Giongo, A.1
Gano, K.A.2
Crabb, D.B.3
Mukherjee, N.4
Novelo, L.L.5
-
34
-
-
77949393654
-
Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults
-
Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, et al. (2010) Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults. PLOS ONE 5.2:: 10.371/journal.pone.0009085 [doi]. PubMed: 20140211.
-
(2010)
PLOS ONE
, vol.5
, pp. 10
-
-
Larsen, N.1
Vogensen, F.K.2
van den Berg, F.W.3
Nielsen, D.S.4
Andreasen, A.S.5
-
35
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
doi:10.1038/nature05414
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis et al,. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031. doi:10.1038/nature05414. PubMed: 17183312.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis5
-
36
-
-
76349092715
-
Convergent temporal dynamics of the human infant gut microbiota
-
doi:10.1038/ismej.2009.96
-
Trosvik P, Stenseth NC, Rudi K, (2010) Convergent temporal dynamics of the human infant gut microbiota. ISME J 4: 151-158. doi:10.1038/ismej.2009.96. PubMed: 19710708.
-
(2010)
ISME J
, vol.4
, pp. 151-158
-
-
Trosvik, P.1
Stenseth, N.C.2
Rudi, K.3
-
37
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
doi:10.1038/nature10213
-
Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI, (2011) Human nutrition, the gut microbiome and the immune system. Nature 474: 327-336. doi:10.1038/nature10213. PubMed: 21677749.
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
38
-
-
84873275364
-
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
-
doi:10.1186/1471-2164-14-81
-
de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, et al. (2013) Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics 1481:: 81-. doi:10.1186/1471-2164-14-81. PubMed: 23384204.
-
(2013)
BMC Genomics
, vol.14
, pp. 81
-
-
de Muinck, E.J.1
Lagesen, K.2
Afset, J.E.3
Didelot, X.4
Rønningen, K.S.5
-
39
-
-
79955559191
-
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
-
doi:10.1073/pnas.1015622108
-
Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, et al. (2011) Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci U S A 108: 7200-7205. doi:10.1073/pnas.1015622108. PubMed: 21482770.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 7200-7205
-
-
Luo, C.1
Walk, S.T.2
Gordon, D.M.3
Feldgarden, M.4
Tiedje, J.M.5
-
40
-
-
76749155783
-
The systemic imprint of growth and its uses in ecological (meta)genomics
-
doi:10.1371/journal.pgen.1000808
-
Vieira-Silva S, Rocha EP, (2010) The systemic imprint of growth and its uses in ecological (meta)genomics. PLOS Genet 6e67210. doi:10.1371/journal.pgen.1000808. PubMed: 20090831.
-
(2010)
PLOS Genet
, vol.6
-
-
Vieira-Silva, S.1
Rocha, E.P.2
-
42
-
-
49449087156
-
Factors influencing the establishment of the intestinal microbiota in infancy
-
doi:10.1159/000146245
-
Adlerberth I, (2008) Factors influencing the establishment of the intestinal microbiota in infancy. Nestle Nutr Workshop Ser Pediatr Program 62: 13-29. doi:10.1159/000146245. PubMed: 18626190.
-
(2008)
Nestle Nutr Workshop Ser Pediatr Program
, vol.62
, pp. 13-29
-
-
Adlerberth, I.1
-
44
-
-
77956095233
-
Web of ecological interactions in an experimental gut microbiota
-
doi:10.1111/j.1462-2920.2010.02236.x
-
Trosvik P, Rudi K, Straetkvern KO, Jakobsen KS, Naes T, et al. (2010) Web of ecological interactions in an experimental gut microbiota. Environ Microbiol 12: 2677-2687. doi:10.1111/j.1462-2920.2010.02236.x. PubMed: 20482738.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2677-2687
-
-
Trosvik, P.1
Rudi, K.2
Straetkvern, K.O.3
Jakobsen, K.S.4
Naes, T.5
-
45
-
-
0031876504
-
Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli
-
doi:10.1093/oxfordjournals.molbev.a025984
-
Treves DS, Manning S, Adams J, (1998) Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Mol Biol Evol 15: 789-797. doi:10.1093/oxfordjournals.molbev.a025984. PubMed: 9656481.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 789-797
-
-
Treves, D.S.1
Manning, S.2
Adams, J.3
-
46
-
-
34547736903
-
Multivariate analysis of complex DNA sequence electropherograms for high-throughput quantitative analysis of mixed microbial populations
-
doi:10.1128/AEM.00128-07
-
Trosvik P, Skånseng B, Jakobsen KS, Stenseth NC, Naes T, et al. (2007) Multivariate analysis of complex DNA sequence electropherograms for high-throughput quantitative analysis of mixed microbial populations. Appl Environ Microbiol 73: 4975-4983. doi:10.1128/AEM.00128-07. PubMed: 17575003.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4975-4983
-
-
Trosvik, P.1
Skånseng, B.2
Jakobsen, K.S.3
Stenseth, N.C.4
Naes, T.5
-
47
-
-
0018396918
-
Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12
-
PubMed
-
De FM, Levinthal M, Iaccarino M, Guardiola J, (1979) Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12. Microbiol Rev 43: 42-58. PubMed: 379577.
-
(1979)
Microbiol Rev
, vol.43
, pp. 42-58
-
-
De, F.M.1
Levinthal, M.2
Iaccarino, M.3
Guardiola, J.4
-
48
-
-
77957664849
-
Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence
-
doi:10.1186/1471-2164-11-555
-
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, et al. (2010) Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence. BMC Genomics 11555:: 555-. doi:10.1186/1471-2164-11-555. PubMed: 20937090.
-
(2010)
BMC Genomics
, vol.11
, pp. 555
-
-
Fonknechten, N.1
Chaussonnerie, S.2
Tricot, S.3
Lajus, A.4
Andreesen, J.R.5
-
49
-
-
0037154260
-
Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater
-
doi:10.1073/pnas.022493799
-
Shimizu T, Ohtani K, Hirakawa H, Ohshima K, Yamashita A, et al. (2002) Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater. Proc Natl Acad Sci U S A 99: 996-1001. doi:10.1073/pnas.022493799. PubMed: 11792842.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 996-1001
-
-
Shimizu, T.1
Ohtani, K.2
Hirakawa, H.3
Ohshima, K.4
Yamashita, A.5
-
50
-
-
84867405105
-
Competition, not cooperation, dominates interactions among culturable microbial species
-
doi:10.1016/j.cub.2012.08.005
-
Foster KR, Bell T, (2012) Competition, not cooperation, dominates interactions among culturable microbial species. Curr Biol 22: 1845-1850. doi:10.1016/j.cub.2012.08.005. PubMed: 22959348.
-
(2012)
Curr Biol
, vol.22
, pp. 1845-1850
-
-
Foster, K.R.1
Bell, T.2
-
51
-
-
4544321685
-
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
-
doi:10.1128/MMBR.68.3.560-602.2004
-
Brüssow H, Canchaya C, Hardt WD, (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68: 560-602. doi:10.1128/MMBR.68.3.560-602.2004. PubMed: 15353570.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 560-602
-
-
Brüssow, H.1
Canchaya, C.2
Hardt, W.D.3
-
52
-
-
84861972274
-
Regulated virulence controls the ability of a pathogen to compete with the gut microbiota
-
doi:10.1126/science.1222195
-
Kamada N, Kim YG, Sham HP, Vallance BA, Puente JL, et al. (2012) Regulated virulence controls the ability of a pathogen to compete with the gut microbiota. Science 336: 1325-1329. doi:10.1126/science.1222195. PubMed: 22582016.
-
(2012)
Science
, vol.336
, pp. 1325-1329
-
-
Kamada, N.1
Kim, Y.G.2
Sham, H.P.3
Vallance, B.A.4
Puente, J.L.5
-
53
-
-
53849104729
-
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
-
doi:10.1128/JB.00619-08
-
Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, et al. (2008) The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol 190: 6881-6893. doi:10.1128/JB.00619-08. PubMed: 18676672.
-
(2008)
J Bacteriol
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.3
Mongodin, E.F.4
Fricke, W.F.5
-
54
-
-
78149470831
-
Comparison of 61 sequenced Escherichia coli genomes
-
doi:10.1007/s00248-010-9717-3
-
Lukjancenko O, Wassenaar TM, Ussery DW, (2010) Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol 60: 708-720. doi:10.1007/s00248-010-9717-3. PubMed: 20623278.
-
(2010)
Microb Ecol
, vol.60
, pp. 708-720
-
-
Lukjancenko, O.1
Wassenaar, T.M.2
Ussery, D.W.3
-
55
-
-
17844389564
-
Making 'sense' of metabolism: autoinducer-2, LuxS and pathogenic bacteria
-
doi:10.1038/nrmicro1146
-
Vendeville A, Winzer K, Heurlier K, Tang CM, Hardie KR, (2005) Making 'sense' of metabolism: autoinducer-2, LuxS and pathogenic bacteria. Nat Rev Microbiol 3: 383-396. doi:10.1038/nrmicro1146. PubMed: 15864263.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 383-396
-
-
Vendeville, A.1
Winzer, K.2
Heurlier, K.3
Tang, C.M.4
Hardie, K.R.5
-
56
-
-
36248965729
-
Cooperation and conflict in quorum-sensing bacterial populations
-
doi:10.1038/nature06279
-
Diggle SP, Griffin AS, Campbell GS, West SA, (2007) Cooperation and conflict in quorum-sensing bacterial populations. Nature 450: 411-414. 10.1038/nature06279 [doi].
-
(2007)
Nature
, vol.450
, pp. 411-414
-
-
Diggle, S.P.1
Griffin, A.S.2
Campbell, G.S.3
West, S.A.4
-
57
-
-
73949111750
-
Bacterial competition: surviving and thriving in the microbial jungle
-
doi:10.1038/nrmicro2259
-
Hibbing ME, Fuqua C, Parsek MR, Peterson SB, (2010) Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol 8: 15-25. doi:10.1038/nrmicro2259. PubMed: 19946288.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 15-25
-
-
Hibbing, M.E.1
Fuqua, C.2
Parsek, M.R.3
Peterson, S.B.4
-
58
-
-
2442611939
-
Carbon nutrition of Escherichia coli in the mouse intestine
-
doi:10.1073/pnas.0307888101
-
Chang DE, Smalley DJ, Tucker DL, Leatham MP, Norris We, et al. (2004) Carbon nutrition of Escherichia coli in the mouse intestine. Proc Natl Acad Sci U S A 101: 7427-7432. doi:10.1073/pnas.0307888101. PubMed: 15123798.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 7427-7432
-
-
Chang, D.E.1
Smalley, D.J.2
Tucker, D.L.3
Leatham, M.P.4
Norris, W.5
-
59
-
-
1342281329
-
Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine
-
doi:10.1128/IAI.72.3.1666-1676.2004
-
Miranda RL, Conway T, Leatham MP, Chang DE, Norris We, et al. (2004) Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine. Infect Immun 72: 1666-1676. doi:10.1128/IAI.72.3.1666-1676.2004. PubMed: 14977974.
-
(2004)
Infect Immun
, vol.72
, pp. 1666-1676
-
-
Miranda, R.L.1
Conway, T.2
Leatham, M.P.3
Chang, D.E.4
Norris, W.5
-
60
-
-
0015163742
-
The adaptive responses of Escherichia coli to a feast and famine existence
-
doi:10.1016/S0065-2911(08)60069-7
-
Koch AL, (1971) The adaptive responses of Escherichia coli to a feast and famine existence. Adv Microb Physiol 6: 147-217. doi:10.1016/S0065-2911(08)60069-7. PubMed: 4950180.
-
(1971)
Adv Microb Physiol
, vol.6
, pp. 147-217
-
-
Koch, A.L.1
-
61
-
-
0025919354
-
Biochemical basis for whole-cell uptake kinetics: specific affinity, oligotrophic capacity, and the meaning of the michaelis constant
-
PubMed
-
Button DK, (1991) Biochemical basis for whole-cell uptake kinetics: specific affinity, oligotrophic capacity, and the meaning of the michaelis constant. Appl Environ Microbiol 57: 2033-2038. PubMed: 16348524.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 2033-2038
-
-
Button, D.K.1
-
62
-
-
84861992014
-
The application of ecological theory toward an understanding of the human microbiome
-
PubMed, science.10.1126/science.1224203 [doi]. doi:10.1126/science.1224203
-
Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA, (2012) The application of ecological theory toward an understanding of the human microbiome. Science 336: 1255-1262. science.10.1126/science.1224203 [doi]. doi:10.1126/science.1224203. PubMed: 22674335.
-
(2012)
Science
, vol.336
, pp. 1255-1262
-
-
Costello, E.K.1
Stagaman, K.2
Dethlefsen, L.3
Bohannan, B.J.4
Relman, D.A.5
-
63
-
-
40549120596
-
The RAST Server: rapid annotations using subsystems technology
-
doi:10.1186/1471-2164-9-75
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 975:: 75-. doi:10.1186/1471-2164-9-75. PubMed: 18261238.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
-
64
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
doi:10.1093/bioinformatics/bti610
-
Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 213674-3676:: 3674-6. doi:10.1093/bioinformatics/bti610. PubMed: 16081474.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
García-Gómez, J.M.3
Terol, J.4
Talón, M.5
|