The Microbial Database for Danish wastewater treatment plants with nutrient removal (MiDas-DK) - A tool for understanding activated sludge population dynamics and community stability

Water Science and Technology

Volumn 67, Issue 11, 2013, Pages 2519-2526

  Mielczarek, A T ^a   Saunders, A M ^a   Larsen, P ^a   Albertsen, M ^a   Stevenson, M ^a   Nielsen, J L ^a   Nielsen, P H ^a  

^a AALBORG UNIVERSITY   (Denmark)

Author keywords

Activated sludge; Core species; Database; Dynamics; Microbial populations; Nutrient removal; Wastewater treatment

Indexed keywords

ACTIVATED SLUDGE; COMMUNITY COMPOSITION; CORE SPECIES; FLUORESCENCE IN SITU HYBRIDIZATION; MICROBIAL POPULATIONS; NUTRIENT REMOVAL; WASTEWATER ENGINEERING; WASTEWATER TREATMENT PLANTS;

DATABASE SYSTEMS; DYNAMICS; FISH; FLUORESCENCE MICROSCOPY; MICROORGANISMS; NUTRIENTS; RNA; SEWAGE PUMPING PLANTS; WASTEWATER TREATMENT; WATER TREATMENT PLANTS;

ACTIVATED SLUDGE PROCESS;

RNA 16S;

CORRELATION; DATA ACQUISITION; DATABASE; GENOMICS; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; POPULATION DYNAMICS; PROJECT MANAGEMENT; STATISTICAL ANALYSIS; WASTE MANAGEMENT; WASTEWATER;

ACTIVATED SLUDGE; AMPLICON; ARTICLE; COMMUNITY STRUCTURE; CORRELATION ANALYSIS; ECOSYSTEM; FERMENTATION; FLUORESCENCE IN SITU HYBRIDIZATION; FOAMING; HYDROLYSIS; METAGENOMICS; MICROBIAL COMMUNITY; NUTRIENT MANAGEMENT; POPULATION DYNAMICS; QUANTITATIVE ANALYSIS; REFERENCE DATABASE; RNA SEQUENCE; STATISTICAL ANALYSIS; TIME SERIES ANALYSIS; WASTE WATER MANAGEMENT; WASTE WATER TREATMENT PLANT;

BACTERIA; DATABASES, FACTUAL; DENMARK; IN SITU HYBRIDIZATION, FLUORESCENCE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEWAGE; WASTE DISPOSAL, FLUID;

DENMARK;

BACTERIA (MICROORGANISMS);

EID: 84878920095     PISSN: 02731223     EISSN: None     Source Type: Journal    
DOI: 10.2166/wst.2013.151     Document Type: Article

References (19)

1. Albertsen, M., Hansen, L. B., Saunders, A. M., Nielsen, P. H. & Nielsen, K. L. 2012 A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME Journal 6, 1094-1106.
2. Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D. & Costello, E. K. 2010 QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7, 335-336.
3. Eikelboom, D. H. 2000 Process Control of Activated Sludge Plants by Microscopic Investigation. IWA Publishing, London, UK.
4. Jenkins, D., Richard, M. G. & Daigger, G. T. 2004 Manual on the Causes and Control of Activated Sludge Bulking, Foaming, and other Solids Separation Problems. IWA Publishing, London, UK.
5. Kong, Y., Nielsen, J. L. & Nielsen, P. H. 2005 Identity and ecophysiology of uncultured Actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Applied and Environmental Microbiology 71, 4076-4085. (Pubitemid 40980581)
6. Kragelund, C., Thomsen, T. R., Mielczarek, A. T. & Nielsen, P. H. 2011 Eikelboom's morphotype 0803 in activated sludge belongs to genus Caldilinea in the phylum Chloroflexi. FEMS Microbiology Ecology 76, 451-462.
7. Loy, A., Maixner, F., Wagner, M. & Horn, M. 2007 ProbeBase an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Research 35 (Database issue), D800eD804.
8. McDonald, D., Price, M. N., Goodrich, J., Nawrocki, E. P., Desantis, T. Z., Probst, A., Andersen, L. A., Knight, R. & Hugenholtz, P. 2012 An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME Journal 6, 610-618.
9. Mielczarek, A. T., Kragelund, C., Eriksen, P. S. & Nielsen, P. H. 2012 Population dynamics of filamentous bacteria in Danish wastewater treatment plants with nutrient removal. Water Research 46, 3781-3795.
10. Mielczarek, A. T., Nguyen, H. T. T., Nielsen, J. L. & Nielsen, P. H. 2012 Population dynamics of bacteria involved in enhanced biological phosphorus removal in Danish wastewater treatment plants. Water Research 47, 1529-1544.
11. Morgan-Sagastume, F., Larsen, P., Nielsen, J. L. & Nielsen, P. H. 2008 Characterization of the loosely attached fraction of activated sludge bacteria. Water Research 42, 843-854. (Pubitemid 351231944)
12. Nguyen, T. T. H., Le, Q. V., Hansen, A. A., Nielsen, J. L. & Nielsen, P. H. 2011 High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems. FEMS Microbiology Ecology 76, 256-267.
13. Nguyen, T. T. H., Nielsen, J. L. & Nielsen, P. H. 2012 'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants. Environmental Microbiology 14, 2826-2837.
14. Nielsen, P. H., Lemmer, H. & Daims, H. (eds) 2009 FISH Handbook for Biological Wastewater Treatment. IWA Publishing, London, UK.
15. Nielsen, P. H., Mielczarek, A. T., Kragelund, C., Nielsen, J. L., Saunders, A. M., Kong, Y., Hansen, A. A. &Vollertsen, J. 2010 A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants. Water Research 44, 5070-5088.
16. Nielsen, P. H., Saunders, A. M., Hansen, A. A., Larsen, P. & Nielsen, J. L. 2012 Microbial communities involved in enhanced biological phosphorus removal from wastewater - a model system in environmental biotechnology. Current Opinion in Biotechnology 23 (3), 452-459.
17. Nielsen, J. L.,Nguyen, T. T. H., Rikke LouiseMeyer, R. L.&Nielsen, P.H. 2012 Identification of glucose-fermenting bacteria in a fullscale enhanced biological phosphorus removal plant by stable isotope probing. Microbiology 158, 1818-1825.
18. Seviour, R. J. & Nielsen, P. H. 2010 Microbial Ecology of Activated Sludge. IWA Publishing, London, UK.
19. Wu, G., Lewis, J., Hoffmann, C., Chen, Y.-Y., Knight, R. & Bittinger, K. 2010 Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiology 10, 206.