메뉴 건너뛰기




Volumn 8, Issue 6, 2013, Pages

Transcription Factors in Escherichia coli Prefer the Holo Conformation

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TRANSCRIPTION FACTOR;

EID: 84878913760     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0065723     Document Type: Article
Times cited : (23)

References (33)
  • 1
    • 84876543942 scopus 로고    scopus 로고
    • RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
    • Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, et al. (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research 41: D203-D213.
    • (2013) Nucleic Acids Research , vol.41
    • Salgado, H.1    Peralta-Gil, M.2    Gama-Castro, S.3    Santos-Zavaleta, A.4    Muñiz-Rascado, L.5
  • 2
    • 0242407438 scopus 로고    scopus 로고
    • Regulatory Network of Escherichia coli: Consistency Between Literature Knowledge and Microarray Profiles
    • Gutiérrez-Ríos RM, Rosenblueth DA, Loza JA, Huerta AM, Glasner JD, et al. (2003) Regulatory Network of Escherichia coli: Consistency Between Literature Knowledge and Microarray Profiles. Genome Res 13: 2435-2443.
    • (2003) Genome Res , vol.13 , pp. 2435-2443
    • Gutiérrez-Ríos, R.M.1    Rosenblueth, D.A.2    Loza, J.A.3    Huerta, A.M.4    Glasner, J.D.5
  • 4
    • 0031904590 scopus 로고    scopus 로고
    • Demand Theory of Gene Regulation. I. Quantitative Development of the Theory
    • Savageau MA, (1998) Demand Theory of Gene Regulation. I. Quantitative Development of the Theory. Genetics 149: 1665-1676.
    • (1998) Genetics , vol.149 , pp. 1665-1676
    • Savageau, M.A.1
  • 5
    • 0031927611 scopus 로고    scopus 로고
    • Demand Theory of Gene Regulation. II. Quantitative Application to the Lactose and Maltose Operons of Escherichia coli
    • Savageau MA, (1998) Demand Theory of Gene Regulation. II. Quantitative Application to the Lactose and Maltose Operons of Escherichia coli. Genetics 149: 1677-1691.
    • (1998) Genetics , vol.149 , pp. 1677-1691
    • Savageau, M.A.1
  • 6
    • 33751222901 scopus 로고    scopus 로고
    • Structural basis of the sulphate starvation response in E. coli: crystal structure and mutational analysis of the cofactor-binding domain of the Cbl transcriptional regulator
    • Stec E, Witkowska-Zimny M, Hryniewicz MM, Neumann P, Wilkinson AJ, et al. (2006) Structural basis of the sulphate starvation response in E. coli: crystal structure and mutational analysis of the cofactor-binding domain of the Cbl transcriptional regulator. J Mol Biol 364: 309-322.
    • (2006) J Mol Biol , vol.364 , pp. 309-322
    • Stec, E.1    Witkowska-Zimny, M.2    Hryniewicz, M.M.3    Neumann, P.4    Wilkinson, A.J.5
  • 7
    • 0028835104 scopus 로고
    • Leucine-responsive regulatory protein: a global regulator of gene expression in E. coli
    • Newman EB, Lin R, (1995) Leucine-responsive regulatory protein: a global regulator of gene expression in E. coli. Annu Rev Microbiol 49: 747-775.
    • (1995) Annu Rev Microbiol , vol.49 , pp. 747-775
    • Newman, E.B.1    Lin, R.2
  • 8
    • 0033956361 scopus 로고    scopus 로고
    • The TorR high-affinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli
    • Ansaldi M, Simon G, Lepelletier M, Mejean V, (2000) The TorR high-affinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli. J Bacteriol 182: 961-966.
    • (2000) J Bacteriol , vol.182 , pp. 961-966
    • Ansaldi, M.1    Simon, G.2    Lepelletier, M.3    Mejean, V.4
  • 9
    • 34547229278 scopus 로고    scopus 로고
    • Metal sensor proteins: nature's metalloregulated allosteric switches
    • Giedroc DP, Arunkumar AI (2007) Metal sensor proteins: nature's metalloregulated allosteric switches. Dalton Trans: 3107-3120.
    • (2007) Dalton Trans , pp. 3107-3120
    • Giedroc, D.P.1    Arunkumar, A.I.2
  • 10
    • 37249067732 scopus 로고    scopus 로고
    • The origin of protein interactions and allostery in colocalization
    • Kuriyan J, Eisenberg D, (2007) The origin of protein interactions and allostery in colocalization. Nature 450: 983-990.
    • (2007) Nature , vol.450 , pp. 983-990
    • Kuriyan, J.1    Eisenberg, D.2
  • 11
    • 63749116038 scopus 로고    scopus 로고
    • Allostery in the LacI/GalR family: variations on a theme
    • Swint-Kruse L, Matthews KS, (2009) Allostery in the LacI/GalR family: variations on a theme. Curr Opin Microbiol 12: 129-137.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 129-137
    • Swint-Kruse, L.1    Matthews, K.S.2
  • 12
    • 9644283008 scopus 로고    scopus 로고
    • Cooperative Binding of the Leucine-Responsive Regulatory Protein (Lrp) to DNA
    • Chen S, Iannolo M, Calvo JM, (2005) Cooperative Binding of the Leucine-Responsive Regulatory Protein (Lrp) to DNA. Journal of Molecular Biology 345: 251-264.
    • (2005) Journal of Molecular Biology , vol.345 , pp. 251-264
    • Chen, S.1    Iannolo, M.2    Calvo, J.M.3
  • 13
    • 0026003072 scopus 로고
    • Control site location and transcriptional regulation in Escherichia coli
    • Collado-Vides J, Magasanik B, Gralla JD, (1991) Control site location and transcriptional regulation in Escherichia coli. Microbiol Rev 55: 371-394.
    • (1991) Microbiol Rev , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 14
    • 0017635932 scopus 로고
    • Design of molecular control mechanisms and the demand for gene expression
    • Savageau MA, (1977) Design of molecular control mechanisms and the demand for gene expression. Proc Natl Acad Sci U S A 74: 5647-5651.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 5647-5651
    • Savageau, M.A.1
  • 15
    • 84878918108 scopus 로고
    • In: Goodwin BC, and Saunders, P.T., editor. Theoretical biology: epigenetic and evolutionary order from complex systems Edinburgh University Press
    • Savageau MA (1989) Are there rules governing patterns of gene regulation? In: Goodwin BC, and Saunders, P.T., editor. Theoretical biology: epigenetic and evolutionary order from complex systems Edinburgh University Press. 42-66.
    • (1989) Are there rules governing patterns of gene regulation? , pp. 42-66
    • Savageau, M.A.1
  • 16
    • 0034570532 scopus 로고    scopus 로고
    • MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products
    • Serres MH, Riley M, (2000) MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. Microb Comp Genomics 5: 205-222.
    • (2000) Microb Comp Genomics , vol.5 , pp. 205-222
    • Serres, M.H.1    Riley, M.2
  • 17
    • 16744368260 scopus 로고
    • Biochemical systems analysis: a study of function and design in molecular biology
    • Reading, Mass.: Addison-Wesley Pub. Co
    • Savageau MA (1976) Biochemical systems analysis: a study of function and design in molecular biology. Reading, Mass.: Addison-Wesley Pub. Co., Advanced Book Program. xvii, 379 p. p.
    • (1976) Advanced Book Program , vol.xvii , pp. 379
    • Savageau, M.A.1
  • 19
    • 67049117729 scopus 로고    scopus 로고
    • Evolutionary selection between alternative modes of gene regulation
    • Gerland U, Hwa T, (2009) Evolutionary selection between alternative modes of gene regulation. Proc Natl Acad Sci U S A 106: 8841-8846.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 8841-8846
    • Gerland, U.1    Hwa, T.2
  • 20
    • 80054756690 scopus 로고    scopus 로고
    • Non-transcriptional regulatory processes shape transcriptional network dynamics
    • Ray JCJ, Tabor JJ, Igoshin OA, (2011) Non-transcriptional regulatory processes shape transcriptional network dynamics. Nat Rev Micro 9: 817-828.
    • (2011) Nat Rev Micro , vol.9 , pp. 817-828
    • Ray, J.C.J.1    Tabor, J.J.2    Igoshin, O.A.3
  • 21
    • 17644366759 scopus 로고    scopus 로고
    • Transcription attenuation: a highly conserved regulatory strategy used by bacteria
    • Merino E, Yanofsky C, (2005) Transcription attenuation: a highly conserved regulatory strategy used by bacteria. Trends in Genetics 21: 260-264.
    • (2005) Trends in Genetics , vol.21 , pp. 260-264
    • Merino, E.1    Yanofsky, C.2
  • 22
    • 0020549467 scopus 로고
    • Regulation of differentiated cell-specific functions
    • Savageau MA, (1983) Regulation of differentiated cell-specific functions. Proc Natl Acad Sci U S A 80: 1411-1415.
    • (1983) Proc Natl Acad Sci U S A , vol.80 , pp. 1411-1415
    • Savageau, M.A.1
  • 23
    • 0343597687 scopus 로고
    • Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter
    • Pribnow D, (1975) Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Proc Natl Acad Sci U S A 72: 784-788.
    • (1975) Proc Natl Acad Sci U S A , vol.72 , pp. 784-788
    • Pribnow, D.1
  • 24
    • 78651299341 scopus 로고    scopus 로고
    • RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
    • Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muniz-Rascado L, et al. (2011) RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Res 39: D98-105.
    • (2011) Nucleic Acids Res , vol.39
    • Gama-Castro, S.1    Salgado, H.2    Peralta-Gil, M.3    Santos-Zavaleta, A.4    Muniz-Rascado, L.5
  • 25
  • 28
    • 0021700772 scopus 로고
    • Bacterial regulation: global regulatory networks
    • Gottesman S, (1984) Bacterial regulation: global regulatory networks. Annu Rev Genet 18: 415-441.
    • (1984) Annu Rev Genet , vol.18 , pp. 415-441
    • Gottesman, S.1
  • 29
    • 0242386460 scopus 로고    scopus 로고
    • Identifying global regulators in transcriptional regulatory networks in bacteria
    • Martínez-Antonio A, Collado-Vides J, (2003) Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 6: 482-489.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 482-489
    • Martínez-Antonio, A.1    Collado-Vides, J.2
  • 30
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 32
    • 0020891851 scopus 로고
    • Escherichia coli habitats, cell types, and molecular mechanisms of gene control
    • Savageau MA, (1983) Escherichia coli habitats, cell types, and molecular mechanisms of gene control. The american naturalist 122: 732-744.
    • (1983) The American Naturalist , vol.122 , pp. 732-744
    • Savageau, M.A.1
  • 33
    • 84907095419 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • R Development Core Team, Vienna, Austria. ISBN 3-900051-07-0, URL
    • R Development Core Team (2011) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL.
    • (2011) R Foundation for Statistical Computing


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.