XRegulation of axon guidance by compartmentalized nonsense-mediated mRNA decay

Cell

Volumn 153, Issue 6, 2013, Pages 1252-

  Colak, Dilek ^a   Ji, Sheng Jian ^a   Porse, Bo T ^b,c,d   Jaffrey, Samie R ^a  

^a WEILL CORNELL MEDICAL COLLEGE   (United States)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d University of Copenhagen   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; ROBO3 2 PROTEIN; ROUNDABOUT RECEPTOR; SLIT PROTEIN; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; CELL COMPARTMENTALIZATION; CONTROLLED STUDY; EMBRYO; EXON; GROWTH CONE; INTRON; MOUSE; NERVE FIBER; NERVE FIBER DEGENERATION; NONHUMAN; NONSENSE MEDIATED MRNA DECAY; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RECEPTOR DOWN REGULATION; RECEPTOR UPREGULATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA DEGRADATION; RNA PROBE; RNA TRANSLATION; SPINAL CORD; STOP CODON; WALLERIAN DEGENERATION;

EID: 84878888946     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.04.056     Document Type: Article

References (56)

1. D.L. Black, and S.L. Zipursky To cross or not to cross: alternatively spliced forms of the Robo3 receptor regulate discrete steps in axonal midline crossing Neuron 58 2008 297 298
2. C.R. Bramham, and D.G. Wells Dendritic mRNA: transport, translation and function Nat. Rev. Neurosci. 8 2007 776 789
3. P.A. Brittis, Q. Lu, and J.G. Flanagan Axonal protein synthesis provides a mechanism for localized regulation at an intermediate target Cell 110 2002 223 235
4. D.S. Campbell, and C.E. Holt Chemotropic responses of retinal growth cones mediated by rapid local protein synthesis and degradation Neuron 32 2001 1013 1026
5. M.S. Carter, J. Doskow, P. Morris, S. Li, R.P. Nhim, S. Sandstedt, and M.F. Wilkinson A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in vivo is reversed by protein synthesis inhibitors in vitro J. Biol. Chem. 270 1995 28995 29003
6. Y.F. Chang, J.S. Imam, and M.F. Wilkinson The nonsense-mediated decay RNA surveillance pathway Annu. Rev. Biochem. 76 2007 51 74
7. Z. Chen, B.B. Gore, H. Long, L. Ma, and M. Tessier-Lavigne Alternative splicing of the Robo3 axon guidance receptor governs the midline switch from attraction to repulsion Neuron 58 2008 325 332
8. M.S. Cohen, C. Bas Orth, H.J. Kim, N.L. Jeon, and S.R. Jaffrey Neurotrophin-mediated dendrite-to-nucleus signaling revealed by microfluidic compartmentalization of dendrites Proc. Natl. Acad. Sci. USA 108 2011 11246 11251
9. M.K. Doma, and R. Parker RNA quality control in eukaryotes Cell 131 2007 660 668
10. J. Dostie, and G. Dreyfuss Translation is required to remove Y14 from mRNAs in the cytoplasm Curr. Biol. 12 2002 1060 1067
11. T.A. Evans, and G.J. Bashaw Functional diversity of Robo receptor immunoglobulin domains promotes distinct axon guidance decisions Curr. Biol. 20 2010 567 572
12. Y. Feng, T. Yan, Z. He, and Q. Zhai Wld(S), Nmnats and axon degeneration - progress in the past two decades Protein Cell 1 2010 237 245
13. C. Giorgi, G.W. Yeo, M.E. Stone, D.B. Katz, C. Burge, G. Turrigiano, and M.J. Moore The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression Cell 130 2007 179 191
14. U. Hengst, A. Deglincerti, H.J. Kim, N.L. Jeon, and S.R. Jaffrey Axonal elongation triggered by stimulus-induced local translation of a polarity complex protein Nat. Cell Biol. 11 2009 1024 1030
15. J. Hodgkin, A. Papp, R. Pulak, V. Ambros, and P. Anderson A new kind of informational suppression in the nematode Caenorhabditis elegans Genetics 123 1989 301 313
16. R. Imondi, and Z. Kaprielian Commissural axon pathfinding on the contralateral side of the floor plate: a role for B-class ephrins in specifying the dorsoventral position of longitudinally projecting commissural axons Development 128 2001 4859 4871
17. Y. Ishigaki, X. Li, G. Serin, and L.E. Maquat Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20 Cell 106 2001 607 617
18. A. Jaworski, H. Long, and M. Tessier-Lavigne Collaborative and specialized functions of Robo1 and Robo2 in spinal commissural axon guidance J. Neurosci. 30 2010 9445 9453
19. H. Jung, B.C. Yoon, and C.E. Holt Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair Nat. Rev. Neurosci. 13 2012 308 324
20. S.R. Kadison, and Z. Kaprielian Diversity of contralateral commissural projections in the embryonic rodent spinal cord J. Comp. Neurol. 472 2004 411 422
21. Y.K. Kim, L. Furic, L. Desgroseillers, and L.E. Maquat Mammalian Staufen1 recruits Upf1 to specific mRNA 3'UTRs so as to elicit mRNA decay Cell 120 2005 195 208
22. P. Leeds, J.M. Wood, B.S. Lee, and M.R. Culbertson Gene products that promote mRNA turnover in Saccharomyces cerevisiae Mol. Cell. Biol. 12 1992 2165 2177
23. F. Lejeune, and L.E. Maquat Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells Curr. Opin. Cell Biol. 17 2005 309 315
24. K.M. Leung, F.P. van Horck, A.C. Lin, R. Allison, N. Standart, and C.E. Holt Asymmetrical beta-actin mRNA translation in growth cones mediates attractive turning to netrin-1 Nat. Neurosci. 9 2006 1247 1256
25. S. Li, and M.F. Wilkinson Nonsense surveillance in lymphocytes? Immunity 8 1998 135 141
26. H. Long, C. Sabatier, L. Ma, A. Plump, W. Yuan, D.M. Ornitz, A. Tamada, F. Murakami, C.S. Goodman, and M. Tessier-Lavigne Conserved roles for Slit and Robo proteins in midline commissural axon guidance Neuron 42 2004 213 223
27. L.E. Maquat, A.J. Kinniburgh, E.A. Rachmilewitz, and J. Ross Unstable beta-globin mRNA in mRNA-deficient beta o thalassemia Cell 27 1981 543 553
28. Y. Matsumoto, F. Irie, M. Inatani, M. Tessier-Lavigne, and Y. Yamaguchi Netrin-1/DCC signaling in commissural axon guidance requires cell-autonomous expression of heparan sulfate J. Neurosci. 27 2007 4342 4350
29. N.J. McGlincy, and C.W. Smith Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense? Trends Biochem. Sci. 33 2008 385 393
30. Moore, S.W., and Kennedy, T.E. (2008). Dissection and culture of embryonic spinal commissural neurons. In Current Protocols in Neuroscience, Chapter 3, Unit 3.20. http://dx.doi.org/10.1002/0471142301.ns0320s45.
31. H. Nawabi, A. Briançon-Marjollet, C. Clark, I. Sanyas, H. Takamatsu, T. Okuno, A. Kumanogoh, M. Bozon, K. Takeshima, and Y. Yoshida A midline switch of receptor processing regulates commissural axon guidance in vertebrates Genes Dev. 24 2010 396 410
32. M. O'Donnell, R.K. Chance, and G.J. Bashaw Axon growth and guidance: receptor regulation and signal transduction Annu. Rev. Neurosci. 32 2009 383 412
33. V.H. Perry, M.C. Brown, and E.R. Lunn Very slow retrograde and wallerian degeneration in the CNS of C57BL/Ola mice Eur. J. Neurosci. 3 1991 102 105
34. S.L. Reeber, N. Sakai, Y. Nakada, J. Dumas, K. Dobrenis, J.E. Johnson, and Z. Kaprielian Manipulating Robo expression in vivo perturbs commissural axon pathfinding in the chick spinal cord J. Neurosci. 28 2008 8698 8708
35. C. Sabatier, A.S. Plump, M. Le, K. Brose, A. Tamada, F. Murakami, E.Y. Lee, and M. Tessier-Lavigne The divergent Robo family protein rig-1/Robo3 is a negative regulator of slit responsiveness required for midline crossing by commissural axons Cell 117 2004 157 169
36. T. Serafini, T.E. Kennedy, M.J. Galko, C. Mirzayan, T.M. Jessell, and M. Tessier-Lavigne The netrins define a family of axon outgrowth-promoting proteins homologous to C. elegans UNC-6 Cell 78 1994 409 424
37. B. Spitzweck, M. Brankatschk, and B.J. Dickson Distinct protein domains and expression patterns confer divergent axon guidance functions for Drosophila Robo receptors Cell 140 2010 409 420
38. M.A. Sutton, and E.M. Schuman Dendritic protein synthesis, synaptic plasticity, and memory Cell 127 2006 49 58
39. A.M. Taylor, M. Blurton-Jones, S.W. Rhee, D.H. Cribbs, C.W. Cotman, and N.L. Jeon A microfluidic culture platform for CNS axonal injury, regeneration and transport Nat. Methods 2 2005 599 605
40. V.M. Tennyson The fine structure of the axon and growth cone of the dorsal root neuroblast of the rabbit embryo J. Cell Biol. 44 1970 62 79
41. E.A. Vitriol, and J.Q. Zheng Growth cone travel in space and time: the cellular ensemble of cytoskeleton, adhesion, and membrane Neuron 73 2012 1068 1081
42. J. Weischenfeldt, I. Damgaard, D. Bryder, K. Theilgaard-Mönch, L.A. Thoren, F.C. Nielsen, S.E. Jacobsen, C. Nerlov, and B.T. Porse NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements Genes Dev. 22 2008 1381 1396
43. J. Weischenfeldt, J. Waage, G. Tian, J. Zhao, I. Damgaard, J.S. Jakobsen, K. Kristiansen, A. Krogh, J. Wang, and B.T. Porse Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns Genome Biol. 13 2012 R35
44. J. Zhang, X. Sun, Y. Qian, J.P. LaDuca, and L.E. Maquat At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation Mol. Cell. Biol. 18 1998 5272 5283
45. S. Zheng, E.E. Gray, G. Chawla, B.T. Porse, T.J. O'Dell, and D.L. Black PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2 Nat. Neurosci. 15 2012 381 388 S1
46. Y. Zou, E. Stoeckli, H. Chen, and M. Tessier-Lavigne Squeezing axons out of the gray matter: a role for slit and semaphorin proteins from midline and ventral spinal cord Cell 102 2000 363 375
47. Z. Chen, B.B. Gore, H. Long, L. Ma, and M. Tessier-Lavigne Alternative splicing of the Robo3 axon guidance receptor governs the midline switch from attraction to repulsion Neuron 58 2008 325 332
48. M.J. del Prete, R. Vernal, H. Dolznig, E.W. Müllner, and J.A. Garcia-Sanz Isolation of polysome-bound mRNA from solid tissues amenable for RT-PCR and profiling experiments RNA 13 2007 414 421
49. A. Jaworski, H. Long, and M. Tessier-Lavigne Collaborative and specialized functions of Robo1 and Robo2 in spinal commissural axon guidance J. Neurosci. 30 2010 9445 9453
50. S.J. Ji, and S.R. Jaffrey Intra-axonal translation of SMAD1/5/8 mediates retrograde regulation of trigeminal ganglia subtype specification Neuron 74 2012 95 107
51. V. Lemmon, S.M. Burden, H.R. Payne, G.J. Elmslie, and M.L. Hlavin Neurite growth on different substrates: permissive versus instructive influences and the role of adhesive strength J. Neurosci. 12 1992 818 826
52. A. Okada, F. Charron, S. Morin, D.S. Shin, K. Wong, P.J. Fabre, M. Tessier-Lavigne, and S.K. McConnell Boc is a receptor for sonic hedgehog in the guidance of commissural axons Nature 444 2006 369 373
53. S.L. Reeber, and Z. Kaprielian Leaving the midline: how Robo receptors regulate the guidance of post-crossing spinal commissural axons Cell Adhes. Migr. 3 2009 300 304
54. A.M. Taylor, M. Blurton-Jones, S.W. Rhee, D.H. Cribbs, C.W. Cotman, and N.L. Jeon A microfluidic culture platform for CNS axonal injury, regeneration and transport Nat. Methods 2 2005 599 605
55. J.P. Vessey, P. Macchi, J.M. Stein, M. Mikl, K.N. Hawker, P. Vogelsang, K. Wieczorek, G. Vendra, J. Riefler, and F. Tübing A loss of function allele for murine Staufen1 leads to impairment of dendritic Staufen1-RNP delivery and dendritic spine morphogenesis Proc. Natl. Acad. Sci. USA 105 2008 16374 16379
56. S.I. Wilson, B. Shafer, K.J. Lee, and J. Dodd A molecular program for contralateral trajectory: Rig-1 control by LIM homeodomain transcription factors Neuron 59 2008 413 424