메뉴 건너뛰기




Volumn 10, Issue 1, 2013, Pages

Monitoring of adenovirus serotypes in environmental samples by combined PCR and melting point analyses

Author keywords

Adenovirus; Environment; Melting point analysis; QPCR; Sewage; Viral indicator; Virus stability

Indexed keywords

ADENOVIRIDAE; ARTICLE; BASE MISPAIRING; CONTROLLED STUDY; ENVIRONMENTAL FACTOR; GENETIC HETEROGENEITY; MELTING POINT; MICROBIAL POPULATION DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEROTYPE; SEWAGE; SPECIES DIVERSITY; TEMPERATURE SENSITIVITY; VIRUS IDENTIFICATION; WATER SAMPLING; CLASSIFICATION; DNA SEQUENCE; EVALUATION STUDY; GENETICS; HUMAN; HUMAN ADENOVIRUS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PROCEDURES; TRANSITION TEMPERATURE; VIROLOGY;

EID: 84878743576     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-190     Document Type: Article
Times cited : (24)

References (41)
  • 1
    • 79953083109 scopus 로고    scopus 로고
    • Assessment of wastewater discharge impact from a sewage treatment plant on lagoon later, Lagos, Nigeria
    • Longe EO, Ogundipe AO: Assessment of wastewater discharge impact from a sewage treatment plant on lagoon later, Lagos, Nigeria. Res J Appl Sci Eng Technol 2010, 2(3):274-282.
    • (2010) Res J Appl Sci Eng Technol , vol.2 , Issue.3 , pp. 274-282
    • Longe, E.O.1    Ogundipe, A.O.2
  • 2
    • 34249730953 scopus 로고    scopus 로고
    • Published case studies of waterborne disease outbreaks - Evidence of a recurrent threat
    • Hrudey SE, Hrudey EJ: Published case studies of waterborne disease outbreaks - evidence of a recurrent threat. Water Environ Res 2007, 79(3):233-245.
    • (2007) Water Environ Res , vol.79 , Issue.3 , pp. 233-245
    • Hrudey, S.E.1    Hrudey, E.J.2
  • 3
    • 0033669239 scopus 로고    scopus 로고
    • Impacts of anthropogenic stresses on the early development stages of seaweeds
    • Coelho SM, Rijstenbil JW, Brown MT: Impacts of anthropogenic stresses on the early development stages of seaweeds. J Aquat Ecosyst Stress Recovery 2000, 7(4):317-333.
    • (2000) J Aquat Ecosyst Stress Recovery , vol.7 , Issue.4 , pp. 317-333
    • Coelho, S.M.1    Rijstenbil, J.W.2    Brown, M.T.3
  • 5
    • 3543080023 scopus 로고
    • How some pollutants affect embryos and larvae of american oyster and hard-shell clam
    • Calabrese A: How some pollutants affect embryos and larvae of american oyster and hard-shell clam. Mar Fish Rev 1972, 34(11-12):66-77.
    • (1972) Mar Fish Rev , vol.34 , Issue.11-12 , pp. 66-77
    • Calabrese, A.1
  • 6
    • 30744457056 scopus 로고    scopus 로고
    • Eutrophication: An ecological vision
    • Khan FA, Ansari AA: Eutrophication: An ecological vision. Bot Rev 2005, 71(4):449-482.
    • (2005) Bot Rev , vol.71 , Issue.4 , pp. 449-482
    • Khan, F.A.1    Ansari, A.A.2
  • 7
    • 0001381966 scopus 로고
    • Responses of Kaneohe Bay, Hawaii, to relaxation of sewage stress
    • Edited by Neilson BJ, Cronin LE. Clifton, New Jersey: Humana Press Inc
    • Smith SV: Responses of Kaneohe Bay, Hawaii, to relaxation of sewage stress. In Estuaries and Nutrients. Edited by Neilson BJ, Cronin LE. Clifton, New Jersey: Humana Press Inc; 1981:391-410.
    • (1981) Estuaries and Nutrients , pp. 391-410
    • Smith, S.V.1
  • 8
    • 77956267168 scopus 로고    scopus 로고
    • Giardia and cryptosporidium in harp and hooded seals from the gulf of St. Lawrence, Canada
    • Appelbee AJ, Thompson RCA, Measures LM, Olson ME: Giardia and Cryptosporidium in harp and hooded seals from the Gulf of St. Lawrence, Canada. Vet Parasit 2010, 173(1-2):19-23.
    • (2010) Vet Parasit , vol.173 , Issue.1-2 , pp. 19-23
    • Appelbee, A.J.1    Thompson, R.C.A.2    Measures, L.M.3    Olson, M.E.4
  • 10
    • 0028990871 scopus 로고
    • Survival of the enteric adenoviruses 40 and 41 in tap, sea, and waste water
    • Enriquez CE, Hurst CJ, Gerba CP: Survival of the enteric adenoviruses 40 and 41 in tap, sea, and waste water. Water Res 1995, 29(11):2548-2553.
    • (1995) Water Res , vol.29 , Issue.11 , pp. 2548-2553
    • Enriquez, C.E.1    Hurst, C.J.2    Gerba, C.P.3
  • 11
    • 84917506751 scopus 로고    scopus 로고
    • Catchment characterisation and source water quality
    • Edited by Dufour A, Snozzi M, Köster W, Bartram J, Ronchi E, Fewtrell L. London, UK: IWA Publishing, on behalf of the World Health Organization and the Organisation for Economic Co-operation and Development
    • Medema GJ, Shaw S, Waite M, Snozzi M, Morreau A, Grabow W: Catchment characterisation and source water quality. In Assessing microbial safety of drinking water: Improving approaches and methods. Edited by Dufour A, Snozzi M, Köster W, Bartram J, Ronchi E, Fewtrell L. London, UK: IWA Publishing, on behalf of the World Health Organization and the Organisation for Economic Co-operation and Development; 2003:111-158.
    • (2003) Assessing Microbial Safety of Drinking Water: Improving Approaches and Methods , pp. 111-158
    • Medema, G.J.1    Shaw, S.2    Waite, M.3    Snozzi, M.4    Morreau, A.5    Grabow, W.6
  • 12
    • 0032148957 scopus 로고    scopus 로고
    • Human enteric viruses in the water environment: A minireview
    • Bosch A: Human enteric viruses in the water environment: a minireview. Internatl Microbiol 1998, 1(3):191-196.
    • (1998) Internatl Microbiol , vol.1 , Issue.3 , pp. 191-196
    • Bosch, A.1
  • 13
    • 22944492842 scopus 로고    scopus 로고
    • Microbial agents associated with waterborne diseases
    • Edited by Cloete TE, Rose J, Nel LH, Ford T. London, UK: IWA Publishing London
    • Leclerc H, Schwartzbrod L, Dei-Cas E: Microbial agents associated with waterborne diseases. In Microbial waterborne pathogens. Edited by Cloete TE, Rose J, Nel LH, Ford T. London, UK: IWA Publishing London; 2004:1-54.
    • (2004) Microbial Waterborne Pathogens , pp. 1-54
    • Leclerc, H.1    Schwartzbrod, L.2    Dei-Cas, E.3
  • 15
    • 78650861812 scopus 로고    scopus 로고
    • New perspectives in monitoring drinking water microbial quality
    • Figueras MJ, Borrego JJ: New perspectives in monitoring drinking water microbial quality. Int J Environ Res Public Health 2010, 7(12):4179-4202.
    • (2010) Int J Environ Res Public Health , vol.7 , Issue.12 , pp. 4179-4202
    • Figueras, M.J.1    Borrego, J.J.2
  • 16
    • 77950590982 scopus 로고    scopus 로고
    • Drinking water contaminant list 3 - Final
    • US EPA: Drinking water contaminant list 3 - Final. Fed Reg 2009, 74(194):51850-51862.
    • (2009) Fed Reg , vol.74 , Issue.194 , pp. 51850-51862
    • US EPA1
  • 18
    • 20544469964 scopus 로고    scopus 로고
    • Enteric viruses of humans and animals in aquatic environments: Health risks, detection, and potential water quality assessment tools
    • Fong T-T, Lipp EK: Enteric viruses of humans and animals in aquatic environments: Health risks, detection, and potential water quality assessment tools. Microbiol Mol Biol Rev 2005, 69(2):357-371.
    • (2005) Microbiol Mol Biol Rev , vol.69 , Issue.2 , pp. 357-371
    • Fong, T.-T.1    Lipp, E.K.2
  • 19
    • 0345059134 scopus 로고    scopus 로고
    • Simultaneous detection of enteric viruses by multiplex realtime RT-PCR
    • Beuret C: Simultaneous detection of enteric viruses by multiplex realtime RT-PCR. J Virol Meth 2004, 11(1):1-8.
    • (2004) J Virol Meth , vol.11 , Issue.1 , pp. 1-8
    • Beuret, C.1
  • 20
    • 80054715610 scopus 로고    scopus 로고
    • Occurrence of adenovirus and other enteric viruses in limited-contact freshwater recreational areas and bathing waters
    • Aslan A, Xagoraraki I, Simmons FJ, Rose JB, Dorevitch S: Occurrence of adenovirus and other enteric viruses in limited-contact freshwater recreational areas and bathing waters. J Appl Microbiol 2011, 111(5):1250-1261.
    • (2011) J Appl Microbiol , vol.111 , Issue.5 , pp. 1250-1261
    • Aslan, A.1    Xagoraraki, I.2    Simmons, F.J.3    Rose, J.B.4    Dorevitch, S.5
  • 22
    • 77649189776 scopus 로고    scopus 로고
    • Evaluation of four cell lines for assay of infectious adenoviruses in water samples
    • Jiang SC, Han J, He J-W, Chu W: Evaluation of four cell lines for assay of infectious adenoviruses in water samples. J Water Health 2009, 7(4):650-656.
    • (2009) J Water Health , vol.7 , Issue.4 , pp. 650-656
    • Jiang, S.C.1    Han, J.2    He, J.-W.3    Chu, W.4
  • 23
    • 0034461598 scopus 로고    scopus 로고
    • Species-specific identification of human adenoviruses by a multiplex PCR assay
    • Xu W, McDonough MC, Erdman DD: Species-specific identification of human adenoviruses by a multiplex PCR assay. J Clin Microbiol 2000, 38(11):4114-4120.
    • (2000) J Clin Microbiol , vol.38 , Issue.11 , pp. 4114-4120
    • Xu, W.1    McDonough, M.C.2    Erdman, D.D.3
  • 24
    • 77958131695 scopus 로고    scopus 로고
    • Detection of poliovirus by ICC/qPCR in concentrated water samples has a greater sensitivity and is less costly using BGM cells in suspension as compared to monolaysers
    • Balkin HB, Margolin AB: Detection of poliovirus by ICC/qPCR in concentrated water samples has a greater sensitivity and is less costly using BGM cells in suspension as compared to monolaysers. Virology J 2010, 7:282-285.
    • (2010) Virology J , vol.7 , pp. 282-285
    • Balkin, H.B.1    Margolin, A.B.2
  • 25
    • 84949131502 scopus 로고    scopus 로고
    • Development of a clinical assay for JAK2 V617F genotyping in chronic myeloproliferative disorders
    • Murugesan G, Hsi ED: Development of a clinical assay for JAK2 V617F genotyping in chronic myeloproliferative disorders. Pathol Res 2006:1-4.
    • (2006) Pathol Res , pp. 1-4
    • Murugesan, G.1    Hsi, E.D.2
  • 26
    • 4644245816 scopus 로고    scopus 로고
    • Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis
    • Reed GH, Wittwer CT: Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem 2004, 50(10):1748-1754.
    • (2004) Clin Chem , vol.50 , Issue.10 , pp. 1748-1754
    • Reed, G.H.1    Wittwer, C.T.2
  • 27
    • 0036729786 scopus 로고    scopus 로고
    • Environmental factors influencing human viral pathogens and their potential indicator organisms in the blue mussel, Mytilu eduli: The first Scandinavian report
    • Hernroth BE, Conden-Hansson A, Rehnstam-Holm A, Girones R, Allard AK: Environmental factors influencing human viral pathogens and their potential indicator organisms in the blue mussel, Mytilu eduli: the first Scandinavian report. Appl Environ Microbiol 2002, 68(9):4523-4533.
    • (2002) Appl Environ Microbiol , vol.68 , Issue.9 , pp. 4523-4533
    • Hernroth, B.E.1    Conden-Hansson, A.2    Rehnstam-Holm, A.3    Girones, R.4    Allard, A.K.5
  • 29
    • 0035125380 scopus 로고    scopus 로고
    • Rapid typing of human adenoviruses by a general PCR combined with restriction endonuclease analysis
    • Allard A, Albinsson B, Wadell G: Rapid typing of human adenoviruses by a general PCR combined with restriction endonuclease analysis. J Clin Microbiol 2001, 39(2):498-505.
    • (2001) J Clin Microbiol , vol.39 , Issue.2 , pp. 498-505
    • Allard, A.1    Albinsson, B.2    Wadell, G.3
  • 30
    • 84949135411 scopus 로고    scopus 로고
    • A SYBR green RT-PCR assay in single tube to detect human and bovine noroviruses and control for inhibition
    • Scipioni A, Mauroy A, Ziant D, Saegerman C, Thiry E: A SYBR green RT-PCR assay in single tube to detect human and bovine noroviruses and control for inhibition. J Virol Meth 2008, 5(94):1-8.
    • (2008) J Virol Meth , vol.5 , Issue.94 , pp. 1-8
    • Scipioni, A.1    Mauroy, A.2    Ziant, D.3    Saegerman, C.4    Thiry, E.5
  • 31
    • 40749096880 scopus 로고    scopus 로고
    • Rapid differentiation of influenza A virus subtypes and genetic screening for virus variants by high-resolution melting analysis
    • Lin J-H, Tseng C-P, Chen Y-J, Lin C-Y, Chang S-S, Wu H-S, Cheng J-C: Rapid differentiation of influenza A virus subtypes and genetic screening for virus variants by high-resolution melting analysis. J Clin Microbiol 2008, 46(3):1090-1097.
    • (2008) J Clin Microbiol , vol.46 , Issue.3 , pp. 1090-1097
    • Lin, J.-H.1    Tseng, C.-P.2    Chen, Y.-J.3    Lin, C.-Y.4    Chang, S.-S.5    Wu, H.-S.6    Cheng, J.-C.7
  • 32
    • 60849103771 scopus 로고    scopus 로고
    • Classification of fowl adenovirus serotypes using high resolution melting curve analysis of the hexon gene region
    • Steer PA, Kirkpatrick NC, O'Rourke D, Noormohammadi AH: Classification of fowl adenovirus serotypes using high resolution melting curve analysis of the hexon gene region. J Clin Microbiol 2009, 47(2):311-321.
    • (2009) J Clin Microbiol , vol.47 , Issue.2 , pp. 311-321
    • Steer, P.A.1    Kirkpatrick, N.C.2    O'Rourke, D.3    Noormohammadi, A.H.4
  • 33
    • 84864028998 scopus 로고    scopus 로고
    • The importance of quality control during qPCR data analysis
    • D'haene B, Hellemans J: The importance of quality control during qPCR data analysis. Int Drug Discov 2010:18-24.
    • (2010) Int Drug Discov , pp. 18-24
    • D'haene, B.1    Hellemans, J.2
  • 34
    • 9644272986 scopus 로고    scopus 로고
    • Bacteria and Archaea: Molecular techniques reveal astonishing diversity
    • McInerney JO, Mullarkey M, Wernecke ME, Powell R: Bacteria and Archaea: Molecular techniques reveal astonishing diversity. Biodiversity 2002, 3(2):3-10.
    • (2002) Biodiversity , vol.3 , Issue.2 , pp. 3-10
    • McInerney, J.O.1    Mullarkey, M.2    Wernecke, M.E.3    Powell, R.4
  • 37
    • 79952697494 scopus 로고    scopus 로고
    • Isolation of a novel monkey adenovirus reveals a new phylogenetic clade in the evolutionary history of simian adenoviruses
    • Maluquer de Motes C, Hundesa A, Almeida FC, Bofill-Mas S, Girones R: Isolation of a novel monkey adenovirus reveals a new phylogenetic clade in the evolutionary history of simian adenoviruses. Virology J 2011, 8:125-132.
    • (2011) Virology J , vol.8 , pp. 125-132
    • Maluquer De Motes, C.1    Hundesa, A.2    Almeida, F.C.3    Bofill-Mas, S.4    Girones, R.5
  • 38
    • 33750434269 scopus 로고    scopus 로고
    • Human adenovirus type 1 related to feline adenovirus: Evidence of interspecies transmission
    • Phan TG, Shimizu H, Nishimura S, Okitsu S, Maneekarn N, Ushijima H: Human adenovirus type 1 related to feline adenovirus: evidence of interspecies transmission. Clin Lab 2006, 52(9-10):515-518.
    • (2006) Clin Lab , vol.52 , Issue.9-10 , pp. 515-518
    • Phan, T.G.1    Shimizu, H.2    Nishimura, S.3    Okitsu, S.4    Maneekarn, N.5    Ushijima, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.