-
1
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
10.1093/nar/27.1.29, 148090, 9847135
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 1999, 27:29-34. 10.1093/nar/27.1.29, 148090, 9847135.
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
2
-
-
48349105261
-
WikiPathways: Pathway Editing for the People
-
10.1371/journal.pbio.0060184, 2475545, 18651794
-
Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. WikiPathways: Pathway Editing for the People. PLoS Biology 2008, 6(7):e184. 10.1371/journal.pbio.0060184, 2475545, 18651794.
-
(2008)
PLoS Biology
, vol.6
, Issue.7
-
-
Pico, A.R.1
Kelder, T.2
van Iersel, M.P.3
Hanspers, K.4
Conklin, B.R.5
Evelo, C.6
-
3
-
-
68149137101
-
Mining Biological Pathways Using WikiPathways Web Services
-
10.1371/journal.pone.0006447, 2714472, 19649250
-
Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 2009, 4(7):e6447. 10.1371/journal.pone.0006447, 2714472, 19649250.
-
(2009)
PLoS ONE
, vol.4
, Issue.7
-
-
Kelder, T.1
Pico, A.R.2
Hanspers, K.3
van Iersel, M.P.4
Evelo, C.5
Conklin, B.R.6
-
4
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
10.1093/nar/gki892, 1266070, 16246909
-
Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahrén D, Tsoka S, Darzentas N, Kunin V, López-Bigas N. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Research 2005, 33(19):6083-6089. 10.1093/nar/gki892, 1266070, 16246909.
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahrén, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
López-Bigas, N.10
-
5
-
-
0035860545
-
Pathway Databases: A Case Study in Computational Symbolic Theories
-
10.1126/science.1064621, 11557880
-
Karp PD. Pathway Databases: A Case Study in Computational Symbolic Theories. Science 2001, 293(5537):2040-2044. 10.1126/science.1064621, 11557880.
-
(2001)
Science
, vol.293
, Issue.5537
, pp. 2040-2044
-
-
Karp, P.D.1
-
6
-
-
70049109588
-
MouseCyc: a curated biochemical pathways database for the laboratory mouse
-
10.1186/gb-2009-10-8-r84, 2745765, 19682380
-
Evsikov A, Dolan M, Genrich M, Patek E, Bult C. MouseCyc: a curated biochemical pathways database for the laboratory mouse. Genome Biology 2009, 10(8):R84. 10.1186/gb-2009-10-8-r84, 2745765, 19682380.
-
(2009)
Genome Biology
, vol.10
, Issue.8
-
-
Evsikov, A.1
Dolan, M.2
Genrich, M.3
Patek, E.4
Bult, C.5
-
7
-
-
54949105464
-
PathCase: Pathways database system
-
10.1093/bioinformatics/btn459, 18728044
-
Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Ozsoyoglu M. PathCase: Pathways database system. Bioinformatics 2008, 24(21):2526-2533. 10.1093/bioinformatics/btn459, 18728044.
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2526-2533
-
-
Elliott, B.1
Kirac, M.2
Cakmak, A.3
Yavas, G.4
Mayes, S.5
Cheng, E.6
Wang, Y.7
Gupta, C.8
Ozsoyoglu, G.9
Ozsoyoglu, M.10
-
8
-
-
34447640967
-
GenMAPP 2: New features and resources for pathway analysis
-
10.1186/1471-2105-8-217, 1924866, 17588266
-
Salomonis N, Hanspers K, Zambon A, Vranizan K, Lawlor S, Dahlquist K, Doniger S, Stuart J, Conklin B, Pico A. GenMAPP 2: New features and resources for pathway analysis. BMC Bioinformatics 2007, 8:217. 10.1186/1471-2105-8-217, 1924866, 17588266.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 217
-
-
Salomonis, N.1
Hanspers, K.2
Zambon, A.3
Vranizan, K.4
Lawlor, S.5
Dahlquist, K.6
Doniger, S.7
Stuart, J.8
Conklin, B.9
Pico, A.10
-
9
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
10.1101/gr.1239303, 403769, 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research 2003, 13(11):2498-2504. 10.1101/gr.1239303, 403769, 14597658.
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
10
-
-
54249091564
-
Presenting and exploring biological pathways with PathVisio
-
10.1186/1471-2105-9-399, 2569944, 18817533
-
van Iersel M, Kelder T, Pico A, Hanspers K, Coort S, Conklin B, Evelo C. Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics 2008, 9:399. 10.1186/1471-2105-9-399, 2569944, 18817533.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 399
-
-
van Iersel, M.1
Kelder, T.2
Pico, A.3
Hanspers, K.4
Coort, S.5
Conklin, B.6
Evelo, C.7
-
11
-
-
77956480115
-
Consistency, comprehensiveness, and compatibility of pathway databases
-
10.1186/1471-2105-11-449, 2944280, 20819233
-
Soh D, Dong D, Guo Y, Wong L. Consistency, comprehensiveness, and compatibility of pathway databases. BMC Bioinformatics 2010, 11:449. 10.1186/1471-2105-11-449, 2944280, 20819233.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 449
-
-
Soh, D.1
Dong, D.2
Guo, Y.3
Wong, L.4
-
12
-
-
80053980945
-
Critical assessment of human metabolic pathway databases: A stepping stone for future integration
-
10.1186/1752-0509-5-165, 3271347, 21999653
-
Stobbe M, Houten S, Jansen G, van Kampen A, Moerland P. Critical assessment of human metabolic pathway databases: A stepping stone for future integration. BMC Systems Biology 2011, 5:165. 10.1186/1752-0509-5-165, 3271347, 21999653.
-
(2011)
BMC Systems Biology
, vol.5
, pp. 165
-
-
Stobbe, M.1
Houten, S.2
Jansen, G.3
van Kampen, A.4
Moerland, P.5
-
13
-
-
78651335912
-
ConsensusPathDB: toward a more complete picture of cell biology
-
3013724, 21071422
-
Kamburov A, Pentchev K, Galicka H, Wierling C, Lehrach H, Herwig R. ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Research 2011, 39(suppl 1):D712. 3013724, 21071422.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Kamburov, A.1
Pentchev, K.2
Galicka, H.3
Wierling, C.4
Lehrach, H.5
Herwig, R.6
-
14
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
549063, 15642094
-
Romero P, Wagg J, Green ML, Kaiser D, Krummenacker M, Karp PD. Computational prediction of human metabolic pathways from the complete human genome. Genome Biology 2005, 6:R2. 549063, 15642094.
-
(2005)
Genome Biology
, vol.6
-
-
Romero, P.1
Wagg, J.2
Green, M.L.3
Kaiser, D.4
Krummenacker, M.5
Karp, P.D.6
-
15
-
-
77956664073
-
The BioPAX community standard for pathway data sharing
-
10.1038/nbt.1666, 3001121, 20829833
-
Demir E, Cary MP, Paley S, Fukuda K, et al. The BioPAX community standard for pathway data sharing. Nature Biotechnology 2010, 28(9):935-942. 10.1038/nbt.1666, 3001121, 20829833.
-
(2010)
Nature Biotechnology
, vol.28
, Issue.9
, pp. 935-942
-
-
Demir, E.1
Cary, M.P.2
Paley, S.3
Fukuda, K.4
-
16
-
-
13444272087
-
Entrez Gene: gene-centered information at NCBI
-
D54-8, Database issue, 539985, 15608257
-
Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research 2005, 33(Database issue):D54-8. 539985, 15608257.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
17
-
-
66449084442
-
Infrastructure for the life sciences: design and implementation of the UniProt website
-
10.1186/1471-2105-10-136, 2686714, 19426475
-
Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, Suzek B, Martin M, McGarvey P, Gasteiger E. Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 2009, 10:136. 10.1186/1471-2105-10-136, 2686714, 19426475.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
Bairoch, A.2
Duvaud, S.3
Phan, I.4
Redaschi, N.5
Suzek, B.6
Martin, M.7
McGarvey, P.8
Gasteiger, E.9
-
18
-
-
84896375134
-
The HGNC resources in 2011
-
D519-9, Database
-
Seal R, Gordon S, Lush M, Wright M, Bruford E. the HGNC resources in 2011. Nucleic Acids Research 2011, (39 Database):D519-9., http://genenames.org
-
(2011)
Nucleic Acids Research
, Issue.39
-
-
Seal, R.1
Gordon, S.2
Lush, M.3
Wright, M.4
Bruford, E.5
-
19
-
-
67849095416
-
BioMart Central Portal--unified access to biological data
-
Database, 2703988, 19420058
-
Haider S, Ballester B, Smedley D, Zhang J, Rice P, Kasprzyk A. BioMart Central Portal--unified access to biological data. Nucleic Acids Research 2009, (37 Database):W23-W27. 2703988, 19420058.
-
(2009)
Nucleic Acids Research
, Issue.37
-
-
Haider, S.1
Ballester, B.2
Smedley, D.3
Zhang, J.4
Rice, P.5
Kasprzyk, A.6
-
20
-
-
79955797347
-
Network-Based Pipeline for Analyzing MS Data: An Application toward Liver Cancer
-
10.1021/pr1010845, 3256936, 21410269
-
Goh W, Lee YH, Zubaidah RM, Jin J, Dong D, Chung MCM, Wong L. Network-Based Pipeline for Analyzing MS Data: An Application toward Liver Cancer. Journal of Proteome Research 2011, 10(5):2261-2272. 10.1021/pr1010845, 3256936, 21410269.
-
(2011)
Journal of Proteome Research
, vol.10
, Issue.5
, pp. 2261-2272
-
-
Goh, W.1
Lee, Y.H.2
Zubaidah, R.M.3
Jin, J.4
Dong, D.5
Chung, M.C.M.6
Wong, L.7
-
21
-
-
84862247236
-
Comparative Analysis and Assessment of M. tuberculosis H37Rv Protein-Protein Interaction Datasets
-
10.1186/1471-2164-12-S3-S20, 3333180, 22369691
-
Zhou H, Wong L. Comparative Analysis and Assessment of M. tuberculosis H37Rv Protein-Protein Interaction Datasets. BMC Genomics 2011, 12(Suppl 3):S20. 10.1186/1471-2164-12-S3-S20, 3333180, 22369691.
-
(2011)
BMC Genomics
, vol.12
, Issue.SUPPL. 3
-
-
Zhou, H.1
Wong, L.2
|