Development of a real-time RT-PCR assay for the simultaneous identification, quantitation and differentiation of avian metapneumovirus subtypes A and B

Avian Pathology

Volumn 42, Issue 3, 2013, Pages 283-289

  Cecchinato, Mattia ^a   Lupini, Caterina ^b   Munoz Pogoreltseva, Olga Svetlana ^b   Listorti, Valeria ^b   Mondin, Alessandra ^a   Drigo, Michele ^a   Catelli, Elena ^b  

^a UNIVERSITY OF PADOVA   (Italy)

^b UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE NUCLEOTIDE BINDING PROTEIN; ONCOPROTEIN; PRIMER DNA; SMALL HYDROPHOBIC PROTEIN, VIRUS;

ANIMAL DISEASE; ARTICLE; COMPARATIVE STUDY; EVALUATION STUDY; GENETICS; METAPNEUMOVIRUS; METHODOLOGY; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SPECIES DIFFERENCE;

DNA PRIMERS; GTP-BINDING PROTEINS; METAPNEUMOVIRUS; REAL-TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; RETROVIRIDAE PROTEINS, ONCOGENIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SPECIES SPECIFICITY;

AVES; AVIAN METAPNEUMOVIRUS;

EID: 84878609468     PISSN: 03079457     EISSN: 14653338     Source Type: Journal    
DOI: 10.1080/03079457.2013.788130     Document Type: Article

References (45)

1. Abbassi, H., Rossow, K., Zeigler, A.F. & Faaberg, K.S. 2007. Molecular diagnosis of avian metapneumovirus (aMPV). In Proceedings of the 56th Western Poultry Disease Conference (p. 28 - 30). Omnipress, Madison, WI, USA.
2. Ali, A. and Reynolds, D.L. 1999. A reverse transcription-polymerase chain reaction assay for the detection of avian pneumovirus (Colorado strain). Avian Diseases, 43: 600 - 603. doi: 10.2307/1592663
3. Banet-Noach, C., Simanov, L. and Perk, S. 2005. Characterization of Israeli avian metapneumovirus strains in turkeys and chickens. Avian Pathology, 34: 220 - 226. doi: 10.1080/03079450500112625
4. Barik, S. 1992. Transcription of human respiratory syncytial virus genome RNA in vitro: requirement of cellular factor(s). Journal of Virology, 66: 6813 - 6818.
5. Bayon-Auboyer, M.H., Arnauld, C., Toquin, D. and Eterradossi, N. 2000. Nucleotide sequences of the F, L and G protein genes of two non-A/non-B avian pneumoviruses (APV) reveal a novel APV subgroup. The Journal of General Virology, 81: 2723 - 2733.
6. Bayon-Auboyer, M.H., Jestin, V., Toquin, D., Cherbonnel, M. and Eterradossi, N. 1999. Comparison of F-, G- and N-based RT-PCR protocols with conventional virological procedures for the detection and typing of turkey rhinotracheitis virus. Archives of Virology, 144: 1091 - 1109. doi: 10.1007/s007050050572
7. Catelli, E., Cecchinato, M., Delogu, M., De Matteo, P., Ortali, G., Franciosi, C., De Marco, M.A. and Naylor, C.J. 2004. Avian Pneumovirus infection in turkey and broiler farms in Italy: a virological, molecular and serological field survey. Italian Journal of Animal Science, 3: 286 - 292.
8. Catelli, E., Cecchinato, M., Savage, C.E., Jones, R.C. and Naylor, C.J. 2006. Demonstration of loss of attenuation and extended field persistence of a live avian metapneumovirus vaccine. Vaccine, 24: 6476 - 6482. doi: 10.1016/j.vaccine.2006.06.076
9. Catelli, E., Cook, J.K.A., Chesher, J., Orbell, S.J., Woods, M.A., Baxendale, W. and Huggins, M.B. 1998. The use of virus isolation, histopathology and immunoperoxidase techniques to study the dissemination of a chicken isolate of avian pneumovirus in chickens. Avian Pathology, 27: 632 - 640. doi: 10.1080/03079459808419395
10. Catelli, E., Lupini, C., Cecchinato, M., Ricchizzi, E., Brown, P. and Naylor, C.J. 2010. Field avian metapneumovirus evolution avoiding vaccine induced immunity. Vaccine, 28: 916 - 921. doi: 10.1016/j.vaccine.2009.10.149
11. Catelli, E., Lupini, C., Listorti, V., Marziali, A., De Matteo, P., Naylor, C.J. & Cecchinato, M. (2012a). The pigeon (Columba livia) is not sensitive to Avian Metapneumovirus subtype B and does not play any role in virus spread in experimental conditions. In M. Lierz, U. Heffels-Redmann, E.F. Kaleta, & J. Heckmann. Proceedings of the VII International Symposium on Avian Corona and Pneumovirus Infections (p. 285 - 291). Rauischholzhausen, Germany.
12. Catelli, E., Lupini, C., Listorti, V., Muñoz Pogoreltseva, O.S., Terregino, C., Cecchettin, K. & Cecchinato, M. (2012b). Vaccine interaction and protection against virulent Avian Metapneumovirus (AMPV) challenge after combined administration of Newcastle disease and AMPV live vaccine to one-day old turkeys. In Proceedings of the 61st Western Poultry Disease Conference (p. 38 - 40). Scottsdale, Arizona, USA.
13. Catelli, E., Terregino, C., De Marco, M.A., Delogu, M. and Guberti, V. 2001. Serological evidence of avian pneumovirus infection in reared and free-living pheasants. The Veterinary Record, 149: 56 - 58. doi: 10.1136/vr.149.2.56
14. Cecchinato, M., Catelli, E., Lupini, C., Ricchizzi, E., Clubbe, J., Battilani, M. and Naylor, C.J. 2010. Avian metapneumovirus (AMPV) attachment protein involvement in probable virus evolution concurrent with mass live vaccine introduction. Veterinary Microbiology, 146: 24 - 34. doi: 10.1016/j.vetmic.2010.04.014
15. Cecchinato, M., Catelli, E., Savage, C.E., Jones, R.C. and Naylor, C.J. 2004a. Design, validation, and absolute sensitivity of a novel test for the molecular detection of avian pneumovirus. Journal of Veterinary Diagnostic Investigation, 16: 582 - 585. doi: 10.1177/104063870401600616
16. Cecchinato, M., Catelli, E., Savage, C.E., Pesente, P., Jones, R.C. & Naylor C.J. (2004b). Design and sensitivity of PCR tests for avian pneumovirus. In U. Heffels-Redmann, & E.F. Kaleta. Proceedings of the IV International Symposium on Avian Corona and Pneumovirus Infections (p. 294 - 301). Rauischholzhausen, Germany.
17. Cecchinato, M., Lupini, C., Ricchizzi, E., Falchieri, M., Meini, A., Jones, R.C. and Catelli, E. 2012. Italian field survey reveals a high diffusion of avian metapneumovirus subtype B in layers and weaknesses in the vaccination strategy applied. Avian Diseases, 56: 720 - 724. doi: 10.1637/10202-041312-Reg.1
18. Chacón, J.L., Mizuma, M., Vejarano, M.P., Toquín, D., Eterradossi, N., Patnayak, D.P., Goyal, S.M. and Ferreira, A.J. 2011. Avian metapneumovirus subtypes circulating in Brazilian vaccinated and non vaccinated chicken and turkey farms. Avian Diseases, 55: 82 - 89. doi: 10.1637/9501-081310-Reg.1
19. Cook, J.K.A. and Cavanagh, D. 2002. Detection and differentiation of avian pneumoviruses (metapneumoviruses). Avian Patholology, 31: 117 - 132. doi: 10.1080/03079450120118603
20. Easton, A.J., Domachowske, J.B. and Rosenberg, H.F. 2004. Animal pneumoviruses: molecular genetics and pathogenesis. Clinical Microbiology Reviews, 17: 390 - 412. doi: 10.1128/CMR.17.2.390-412.2004
21. Falchieri, M., Cecchinato, M. & Naylor, C.J. 2012. Unexpected pattern in expression of AMPV proteins: possible explanations and implications. In M. Lierz, U. Heffels-Redmann, E.F. Kaleta, & J. Heckmann. Proceedings of the VII International Symposium on Avian Corona and Pneumovirus Infections (p. 325). Rauischholzhausen, Germany.
22. Falchieri, M., Lupini, C., Cecchinato, M., Catelli, E., Kontolaimou, M. & Naylor, C.J. 2013. Avian metapneumoviruses expressing Infectious Bronchitis virus genes are stable and induce protection. Vaccine, in press, doi: doi: 10.1016/j.vaccine.2013.03.055
23. Ferreira, H.L, Spilki, F.R., Santos, M.M.A., de Almeida, R.S. and Arns, C.W. 2009. Comparative evaluation of conventional RT-PCR and real-time RT-PCR (RRT-PCR) for detection of avian metapneumovirus subtype A. Ciência Rural, Santa Maria, 39: 1445 - 1451.
24. Gough, R.E. and Jones, R.C. 2008. " Avian Metapneumoviruses ". In Diseases of Poultry, 12th edn, Edited by: Saif, Y.M., Fadly, A.M., Glisson, J.R., McDougald, L.R., Nolan, L.K and Swayne, D.E. 100 - 110. Ames: Blackwell Publishing.
25. Guionie, O., Toquin, D., Sellal, E., Bouley, S., Zwingelstein, F., Allée, C., Bougeard, S., Lemière, S. and Eterradossi, N. 2007. Laboratory evaluation of a quantitative real-time reverse transcription PCR assay for the detection and identification of the four subgroups of avian metapneumovirus. Journal of Virological Methods, 139: 150 - 158. doi: 10.1016/j.jviromet.2006.09.022
26. Hess, M., Huggins, M.B., Mudzamiri, R. and Heincz, U. 2004. Avian metapneumovirus excretion in vaccinated and non-vaccinated specified pathogen free laying chickens. Avian Pathology, 33: 35 - 40. doi: 10.1080/0307945031000163273
27. Jing, L., Cook, J.K.A., David, T., Brown, K., Shaw, K. and Cavanagh, D. 1993. Detection of turkey rhinotracheitis virus in turkeys using the polymerase chain reaction. Avian Pathology, 22: 771 - 783. doi: 10.1080/03079459308418963
28. Kles, V., Morin, M., Picault, J., Drouin, P., Guittet, M. and Bennejean, G. 1987. Isolement d'un virus dans un cas de syndrome infectioux du gonflement de la tete avec coryza chez la pintade. Isolation of a virus during an outbreak of coryza and Swollen Head Syndrome in guinea fowl. L'Aviculteur, 483: 112
29. Kwon, J.S., Lee, H.J., Jeong, S.H., Park, J.Y., Hong, Y.H., Lee, Y.J., Youn, H.S., Lee, D.W., Do, S.H., Park, S.Y., Choi, I.S., Lee, J.B. and Song, C.S. 2010. Isolation and characterization of avian metapneumovirus from chickens in Korea. Journal of Veterinary Science, 11: 59 - 66. doi: 10.4142/jvs.2010.11.1.59
30. Lee, E., Song, M.S., Shin, J.Y., Lee, Y.M., Kim, C.J., Lee, Y.S., Kim, H. and Choi, Y.K. 2007. Genetic characterization of avian metapneumovirus subtype C isolated from pheasants in a live bird market. Virus Research, 128: 18 - 25. doi: 10.1016/j.virusres.2007.03.029
31. Lupini, C., Cecchinato, M., Ricchizzi, E., Naylor, C.J. and Catelli, E. 2011. A turkey rhinotracheitis outbreak caused by the environmental spread of a vaccine-derived avian metapneumovirus. Avian Pathology, 40: 525 - 530. doi: 10.1080/03079457.2011.607428
32. Mase, M., Asahi, S., Imai, K., Nakamura, K. and Yamaguchi, S. 1996. Detection of turkey rhinotracheitis virus from chickens with swollen head syndrome by reverse transcriptase-polymerase chain reaction (RT-PCR). The Journal of Veterinary Medical Science, 58: 359 - 361. doi: 10.1292/jvms.58.359
33. Naylor, C.J. and Jones, R.C. 1993. Turkey rinotracheitis virus: a review. Veterinary Bulletin, 63: 439 - 449.
34. Naylor, C., Shaw, K., Britton, P. and Cavanagh, D. 1997. Appearance of type B avian pneumovirus in Great Britain. Avian Pathology, 26: 327 - 338. doi: 10.1080/03079459708419215
35. OIE - World Organization of Animal Health. 2012. Principles and methods of validation of diagnostic assay for infectious diseases. In Terrestrial Animal Health Code, Chapter 1.1.5, available at: http://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/1.01.05_VALIDATION.pdf.
36. Pedersen, J.C., Reynolds, D.L. and Ali, A. 2000. The sensitivity and specificity of a reverse transcription-polymerase chain reaction assay for the avian pneumovirus (Colorado strain). Avian Diseases, 44: 681 - 685. doi: 10.2307/1593111
37. Pedersen, J.C., Senne, D.A., Panigrahy, B. and Reynolds, D.L. 2001. Detection of avian pneumovirus in tissues and swab specimens from infected turkeys. Avian Diseases, 45: 581 - 592. doi: 10.2307/1592898
38. Reed, L.J. and Muench, H. 1938. A simple method of estimating fifty percent end points. American Journal of Hygiene, 27: 493 - 497.
39. Senne, D.A., Edson. R.K., Pederson, J.C. & Panigrahy, B. 1997. Avian pneumovirus update. In AVMA (Ed.). Proceedings of the 134th Annual Congress of American Veterinary Medical Association (p. 190). Nevada, USA.
40. Shin, H.J., Rajashekara, G., Jirjis, F.F., Shaw, D.P., Goyal, S.M., Halvorson, D.A. and Nagaraja, K.V. 2000. Specific detection of avian pneumovirus (APV) US isolates by RT-PCR. Archives of Virology, 145: 1239 - 1246. doi: 10.1007/s007050070123
41. Tan, W., Fang, X., Li, J. and Liu, X. 2000. Molecular beacons: a novel DNA probe for nucleic acid and protein studies. Chemistry, 6: 1107 - 1111. doi: 10.1002/(SICI)1521-3765(20000403)6:7%3C1107::AID-CHEM1107%3E3.3.CO;2-0
42. Toquin, D., Bayon-Auboyer, M.H., Eterradossi, N. and Jestin, V. 1999. Isolation of a pneumovirus from a Muscovy duck. The Veterinary Record, 145: 680
43. Toquin, D., Guionie, O., Jestin, V., Zwingelstein, F., Allee, C. and Eterradossi, N. 2006. European and American subgroup C isolates of avian metapneumovirus belong to different genetic lineages. Virus Genes, 32: 97 - 103. doi: 10.1007/s11262-005-5850-3
44. Tyagi, S., Bratu, D.P. and Kramer, F.R. 1998. Multicolor molecular beacons for allele discrimination. Nature Biotechnology, 16: 49 - 53. doi: 10.1038/nbt0198-49
45. Velayudhan, B.T., McComb, B., Bennett, R.S., Lopes, V.C., Shaw, D., Halvorson, D.A. and Nagaraja, K.V. 2005. Emergence of a virulent type C avian metapneumovirus in turkeys in Minnesota. Avian Diseases, 49: 520 - 526. doi: 10.1637/7388-052805R.1