On the origin of sweet potato (Ipomoea batatas (L.) Lam.) genetic diversity in New Guinea, a secondary centre of diversity

Heredity

Volumn 110, Issue 6, 2013, Pages 594-604

  Roullier, C ^a,b   Kambouo, R ^c   Paofa, J ^c   McKey, D ^b,d   Lebot, V ^a  

^a UMR AGAP   (France)

^b CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

^c NARI   (Papua New Guinea)

^d INSTITUT UNIVERSITAIRE DE FRANCE   (France)

Author keywords

chloroplast and nuclear SSRs; germplasm conservation; Papua New Guinea; secondary centre of diversity; sweet potato

Indexed keywords

LIPOARABINOMANNAN; LIPOPOLYSACCHARIDE; MICROSATELLITE DNA;

CHLOROPLAST; CROP; DATA ACQUISITION; DIFFUSION; GENETIC DIFFERENTIATION; GLOBAL CHANGE; POTATO; REPRODUCTIVE BIOLOGY; SEED; SELECTION; SEXUAL REPRODUCTION;

ARTICLE; CELL NUCLEUS; CHLOROPLAST; GENETIC VARIABILITY; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; HAPLOTYPE; PAPUA NEW GUINEA; PHYLOGEOGRAPHY; PLANT DISEASE; SWEET POTATO;

CELL NUCLEUS; CHLOROPLASTS; GENETIC VARIATION; GENOTYPE; HAPLOTYPES; IPOMOEA BATATAS; LIPOPOLYSACCHARIDES; MICROSATELLITE REPEATS; NEW GUINEA; PHYLOGEOGRAPHY; PLANT DISEASES;

NEW GUINEA;

IPOMOEA BATATAS;

EID: 84878563395     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2013.14     Document Type: Article

References (58)

1. Asfaw A, Blair MW, Almekinders C (2009). Genetic diversity and population structure of common bean (Phaseolus vulgaris L.) landraces from the East African highlands. Theor Appl Genet 120: 1-12.
2. Arnaud-Haond S, Duarte CM, Alberto F, Serra?o EA (2007). Standardizing methods to address clonality in population studies. Mol Ecol 16: 5115-5139. (Pubitemid 350265252)
3. Ballard C (2005). Still good to think with: sweet potato in Oceania. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.) The Sweet Potato in Oceania: A Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56, The University of Sydney: Sydney, Australia, pp 3-13.
4. Barrau J (1957). L'e'nigme de la patate douce en Oce'anie. Etudes d'Outre-Mer 40: 83-87.
5. Bayliss-Smith T, Golson J, Hughes P, Blong R, Ambrose W (2005). Archaeological evidence for the Ipomoea Revolution at Kuk swamp, upper Waghi Valley, Papua New Guinea. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.). The Sweet Potato in Oceania: A Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56, The University of Sydney, Sydney, Australia, pp 3-13.
6. Bourke RM (2005). The continuing Ipomoea revolution in Papua New Guinea. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.) The Sweet Potato in Oceania: A Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56 The University of Sydney: Sydney, Australia, pp 171-180.
7. Bourke M (2009). Sweet potato in Oceania. In: Loebenstein G, Thottappilly G (eds.) The Sweet Potato. Springer: Berlin.
8. Bourke RM, Harwood T (2009). Food and Agriculture in Papua New Guinea. ANU E Press, The Australian National University: Canberra, Australia.
9. Brown AHD (1989). Core collections - a practical approach to genetic resources management. Genome 31: 818-824.
10. Bulmer R (1965). Beliefs concerning the propagation of new varieties of sweet potato in two New Guinea Highland societies. J Polynesian Soc 74: 237-239.
11. Burle ML, Fonseca JR, Kami JA, Gepts P (2010). Microsatellite diversity and genetic structure among common bean (Phaseolus vulgaris L.) landraces in Brazil, a secondary centre of diversity. Theor Appl Genet 121: 801-813.
12. Caillon S, Quero-Garcia J, Lescure JP, Lebot V (2006). Nature of taro (Colocasia esculenta (L.) Schott) genetic diversity prevalent in a Pacific Ocean island, Vanua Lava, Vanuatu. Genet Resour Crop Evol 53: 1273-1289.
13. Clarke AC, Burtenshaw MK, McLenachan PA, Erickson DL, Penny DSMBE Tri-National Young Investigators (2006). Reconstructing the origins and dispersal of the Polynesian bottle gourd (Lagenaria siceraria). Mol Biol Evol 23: 893-900. (Pubitemid 43726053)
14. Clark LV, Jasieniuk M (2011). Polysat: an R package for polyploid microsatellite analysis. Mol Ecol Resour 11: 562-566.
15. Delê tre M (2010). The ins and outs of cassava diversity in Gabon, Central Africa: a pluridisciplinary approach to the dynamics of genetic diversity of Manihot esculenta Crantz (Euphorbiaceae). PhD dissertation, Trinity College, University of Dublin. http:// tel.archives-ouvertes.fr/tel-00623219/ fr/
16. Elias M, Penet L, Vindry P, McKey D, Panaud O, Robert T (2001). Unmanaged sexual reproduction and the dynamics of genetic diversity of a vegetatively propagated crop plant, cassava (Manihot esculenta Crantz), in a traditional farming system. Mol Ecol 10: 1895-1907. (Pubitemid 32792445)
17. Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform 1: 47-50.
18. Fajardo DD, La Bonte DR, Jarret RL (2002). Identifying and selecting genetic diversity in Papua New Guinea sweet potato Ipomoea batatas (L.) Lam. germplasm collected as botanical seed. Genet Resour Crop Evol 49: 463-470. (Pubitemid 35399899)
19. Falush D, Stephens M, Pritchard JK (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7: 574-578. (Pubitemid 47035522)
20. Gichuki ST, Berenyi M, Zhang D, Hermann M, Schmidt J, Glo?ssl Jet al. (2003). Genetic diversity in sweetpotato (Ipomoea batatas (L.) Lam.) in relationship to geographic sources as assessed with RAPD markers. Genet Resour Crop Evol 50: 429-437. (Pubitemid 36738178)
21. Golson J (1977). No room at the top: agricultural intensification in the New Guinea Highlands. In: Allen J, Golson J, Jones R (eds.) Sunda and Sahul. Academic Press: London, UK, pp 601-638.
22. Gorecki PP (1986). Human occupation and agricultural development in the Papua New Guinea Highlands. Mountain Res Dev 6: 159-166.
23. Green RC (2005). Sweet potato transfers in Polynesian prehistory. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.). The Sweet Potato in Oceania: a Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56 The University of Sydney: Sydney, Australia, pp 43-62.
24. Gebremedhin B, Ficetola GF, Naderi S, Rezaei HR, Maudet C, Rioux Det al. (2009). Frontiers in identifying conservation units: from neutral markers to adaptive genetic variation. Anim Conserv 12: 107-109.
25. Gunn BF, Baudouin L, Olsen KM (2011). Independent origins of cultivated coconut (Cocos nucifera L.) in the Old World tropics. PLoS One 6: e21143.
26. Haberle SG (1998). Dating the evidence for prehistoric agricultural change in the highlands of New Guinea: the last 2000 years. Arch Oceania 47: 1-19.
27. Haberle SG, Atkin G (2005). Needles in a haystack: searching for sweet potato (Ipomoea batatas (L.) Lam.) in the fossil pollen record. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.) The Sweet Potato in Oceania: A Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56 The University of Sydney: Sydney, Australia, pp 25-34.
28. Hays TE (1993). 'The New Guinea Highlands': region, culture area, or fuzzy set? Curr Anthropol 34: 141-164.
29. Hoffmann AA, Willi Y (2008). Detecting genetic responses to environmental change. Nat Rev Genet 9: 421-432. (Pubitemid 351693974)
30. Hinkle AE (2007). Population structure of Pacific Cordyline fruticosa (Laxmanniaceae) with implications for human settlement of Polynesia. Am J Bot 94: 828-839. (Pubitemid 46954991)
31. Jombart T (2008). Adegenet: R package for the multivariate analysis of genetic markers. Bioinformatics 24: 1403-1405. (Pubitemid 351737150)
32. Jombart T, Devillard S, Balloux F (2010). Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet 11: 94.
33. Kreike CM, Van Eck HJ, Lebot V (2004). Genetic diversity of taro, Colocasia esculenta (L.) Schott, in Southeast Asia and the Pacific. Theor Appl Genet 109: 761-768. (Pubitemid 39211084)
34. Ladefoged TN, Graves MW, Coil JH (2005). The introduction of sweet potato in Polynesia: early remains in Hawai'i. J Polyn Soc 114: 359-373.
35. Lebot V (1992). Genetic vulnerability of Oceania's traditional crops. Exp Agric 28: 309-323.
36. Lebot V (1999). Biomolecular evidence for plant domestication in Sahul. Genet Resour Crop Evol 46: 619-628.
37. Lebot V, Ivancic A, Abraham K (2005). The geographical distribution of allelic diversity, a practical means of preserving and using minor root crop genetic resources. Exp Agric 41: 475-489. (Pubitemid 41411796)
38. Lutulele RP (2001). Sweet potato variety developments in the PNG highlands: implications for future research and extension focus. In: Bourke RM, Allen MG, Salisbury JD (eds.). Food Security for Papua New Guinea. Proceedings of the Papua New Guinea Food and Nutrition 2000 Conference (ACIAR Proceedings 99). University of Technology: Lae, pp 683-688.
39. McKay JK, Latta RG (2002). Adaptive population divergence: markers, QTL and traits. Trends Ecol Evol 17: 285-291. (Pubitemid 34518298)
40. McKey D, Elias M, Pujol B, Duputie A (2010). The evolutionary ecology of clonally propagated domesticated plants. New Phytol 186: 318-332.
41. Nakanishi T, Kobayashi M (1979). Geographic distribution of cross incompatibility groups in sweet potato. Incompat Newslett 11: 72-75.
42. Ollitrault P, Luro F (2001). Citrus. In: Charrier A, Jacquot M, Hamon S, Nicolas D eds. Tropical Plant Breeding. CIRAD: Paris, France, pp 55-77.
43. Perrier X, De Langhe E, Donohue M, Lentfer C, Vrydaghs L, Bakry Fet al. (2011). Multidisciplinary perspectives on banana (Musa spp.) domestication. Proc Natl Acad Sci USA 108: 11311-11318.
44. Petit RJ, El Mousadik A, Pons O (1998). Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12: 844-855. (Pubitemid 28395189)
45. Pickersgill B (1998). Crop introductions and the development of secondary areas of diversity. In: Prendergast HDV, Etkin NL, Harris DR, Houghton PJ (eds.). Plants for Food and Medicine. Royal Botanic Gardens: Kew, London, UK, pp 93-105.
46. R Development Core Team (2009). R: A Language and Environment for Statistical Computing, Reference Index Version 2.8.1. R Foundation for Statistical Computing: Vienna, Austria.
47. Romao RL (2000). Northeast Brazil: a secondary centre of diversity for watermelon (Citrullus lanatus). Genet Resour Crop Evol 47: 207-213. (Pubitemid 30347658)
48. Roullier C, Rossel G, Tay D, McKey D, Lebot V (2011). Combining chloroplast and nuclear microsatellites to investigate origin and dispersal of New World sweet potato landraces. Mol Ecol 20: 3963-3977.
49. Sardos J, McKey D, Duval MF, Malapa R, Noyer JL, Lebot V (2008). Evolution of cassava (Manihot esculenta Crantz) after recent introduction into a South Pacific Island system: the contribution of sex to the diversification of a clonally propagated crop. Genome 51: 912-921.
50. Sardos J, Noyer JL, Malapa R, Bouchet S, Lebot V (2011). Genetic diversity of taro (Colocasia esculenta (L.) Schott) in Vanuatu, Oceania: an appraisal of the distribution of allelic diversity (DAD) with SSR markers. Genet Resour Crop Evol 59: 805-820.
51. Scaglion R, Soto K (1994). A prehistoric introduction of sweet potato in New Guinea? In Strathern AJ, Sturzenhofecker G (eds.). Migration and Transformation: Regional Perspectives on New Guinea. ASAO Monograph No. 15 University of Pittsburgh PressPittsburgh, PA, USA, pp 257-294.
52. Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Dai?nou O, Pham JL (2006). Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin. Mol Ecol 15: 2421-2431. (Pubitemid 44050713)
53. Schneider J (1995). Farmer practices and sweet potato diversity in highland New Guinea. In: Schneider J (eds.)Indigenous Knowledge in Conservation of Crop Genetic Resources. Proceedings of an International Workshop held in Cisarua. CIP-ESEAP/ CRIFC: Bogor, Indonesia, pp 63-70.
54. Van Wijmeersch P (2001). The status of sweet potato variety evaluation in PNG and recommendations for further research. In: Bourke RM, Allen MG, Salisbury JD (eds.). Food Security for Papua New Guinea. Proceedings of the Papua New Guinea Food and Nutrition 2000 Conference (ACIAR Proceedings 99). University of Technology: Lae, Papua New Guinea., pp 683-688.
55. Wiessner P (2005). Social, symbolic, and ritual roles of the sweet potato in Enga, from its introduction until first contact. In: Ballard C, Brown P, Bourke RM, Harwood T (eds.). The Sweet Potato in Oceania: a Reappraisal. Ethnology Monographs 19 Department of Anthropology, University of Pittsburgh: Pittsburgh, PA, USA, Oceania Monograph 56 The University of Sydney: Sydney, Australia, pp 121-130.
56. Yen DE (1974). The Sweet Potato in Oceania: An Essay in Ethnobotany. Bernice P. Bishop Museum 236, Bishop Museum Press: Honolulu, HA, USA.
57. Zhang DP, Ghislain M, Huama'n Z, Golmirzaie A, Hijmans R (1998). RAPD variation in sweet potato (Ipomoea batatas (L.) Lam.) cultivars from South America and Papua New Guinea. Genet Resour Crop Evol 45: 271-277. (Pubitemid 28265966)
58. Zhang DP, Rossel G, Kriegner A, Hijmans R (2004). AFLP assessment of diversity in sweetpotato from Latin America and the Pacific region: its implications on the dispersal of the crop. Genet Resour Crop Evol 51: 115-120. (Pubitemid 38463801)