메뉴 건너뛰기




Volumn 194, Issue 2, 2013, Pages 505-512

How biochemical constraints of cellular growth shape evolutionary adaptations in metabolism

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE;

EID: 84878524493     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.150631     Document Type: Article
Times cited : (37)

References (34)
  • 1
    • 79955476606 scopus 로고    scopus 로고
    • Metabolic trade-offs and the maintenance of the fittest and the flattest
    • Beardmore, R. E., I. Gudelj, D. A. Lipson, and L. D. Hurst, 2011 Metabolic trade-offs and the maintenance of the fittest and the flattest. Nature 472(7342): 342-346.
    • (2011) Nature , vol.472 , Issue.7342 , pp. 342-346
    • Beardmore, R.E.1    Gudelj, I.2    Lipson, D.A.3    Hurst, L.D.4
  • 3
    • 34247630099 scopus 로고    scopus 로고
    • Growth control of the eukaryote cell: A systems biology study in yeast
    • Castrillo, J. I., L. A. Zeef, D. C. Hoyle, N. Zhang, A. Hayes et al., 2007 Growth control of the eukaryote cell: a systems biology study in yeast. J. Biol. 6: 4.
    • (2007) J. Biol , vol.6 , pp. 4
    • Castrillo, J.I.1    Zeef, L.A.2    Hoyle, D.C.3    Zhang, N.4    Hayes, A.5
  • 4
    • 0024322762 scopus 로고
    • Selection and neutrality in lactose operons of Escherichia Coli
    • Dean, A. M., 1989 Selection and neutrality in lactose operons of Escherichia Coli. Genetics 123: 441-454.
    • (1989) Genetics , vol.123 , pp. 441-454
    • Dean, A.M.1
  • 5
    • 0022500302 scopus 로고
    • Fitness as a function of beta-galactosidase activity in Escherichia coli
    • Dean, A. M., D. E. Dykhuizen, and D. L. Hartl, 1986 Fitness as a function of beta-galactosidase activity in Escherichia coli. Genet. Res. 48(1): 1-8.
    • (1986) Genet. Res , vol.48 , Issue.1 , pp. 1-8
    • Dean, A.M.1    Dykhuizen, D.E.2    Hartl, D.L.3
  • 6
    • 23144432213 scopus 로고    scopus 로고
    • Optimality and evolutionary tuning of the expression level of a protein
    • Dekel, E., and U. Alon, 2005 Optimality and evolutionary tuning of the expression level of a protein. Nature 436(7050): 588-592.
    • (2005) Nature , vol.436 , Issue.7050 , pp. 588-592
    • Dekel, E.1    Alon, U.2
  • 7
    • 0028907619 scopus 로고
    • Gratuitous over-expression of genes in Escherichia coli leads to growth inhibition and ribosome destruction
    • Dong, H., L. Nilsson, and C. G. Kurland, 1995 Gratuitous over-expression of genes in Escherichia coli leads to growth inhibition and ribosome destruction. J. Bacteriol. 177(6): 1497-1504.
    • (1995) J. Bacteriol , vol.177 , Issue.6 , pp. 1497-1504
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 8
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H., L. Nilsson, and C. G. Kurland, 1996 Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260(5): 649-663.
    • (1996) J. Mol. Biol , vol.260 , Issue.5 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 9
    • 0023081983 scopus 로고
    • Metabolic flux and fitness
    • Dykhuizen, D. E., A. M. Dean, and D. L. Hartl, 1987 Metabolic flux and fitness. Genetics 115(1): 25-31.
    • (1987) Genetics , vol.115 , Issue.1 , pp. 25-31
    • Dykhuizen, D.E.1    Dean, A.M.2    Hartl, D.L.3
  • 10
    • 0021370660 scopus 로고
    • Costs of accuracy determined by a maximal growth rate constraint
    • Ehrenberg, M., and C. G. Kurland, 1984 Costs of accuracy determined by a maximal growth rate constraint. Q. Rev. Biophys. 17 (1): 45-82.
    • (1984) Q. Rev. Biophys , vol.17 , Issue.1 , pp. 45-82
    • Ehrenberg, M.1    Kurland, C.G.2
  • 11
    • 1642388599 scopus 로고    scopus 로고
    • Experimental evidence for sympatric ecological diversification 2 to frequency-dependent competition in Escherichia coli
    • Friesen, M. L., G. Saxer, M. Travisano, and M. Doebeli, 2004 Experimental evidence for sympatric ecological diversification 2 to frequency-dependent competition in Escherichia coli. Evolution 58(2): 245-260.
    • (2004) Evolution , vol.58 , Issue.2 , pp. 245-260
    • Friesen, M.L.1    Saxer, G.2    Travisano, M.3    Doebeli, M.4
  • 12
    • 0024287936 scopus 로고
    • Control analysis of metabolic networks. 1. Homogeneous functions and the summation theorems for control coefficients
    • Giersch, C., 1988 Control analysis of metabolic networks. 1. Homogeneous functions and the summation theorems for control coefficients. Eur. J. Biochem. 174(3): 509-513.
    • (1988) Eur. J. Biochem , vol.174 , Issue.3 , pp. 509-513
    • Giersch, C.1
  • 13
    • 0030574071 scopus 로고    scopus 로고
    • Control analysis of unbranched enzymatic chains in states of maximal activity
    • Heinrich, R., and E. Klipp, 1996 Control analysis of unbranched enzymatic chains in states of maximal activity. J. Theor. Biol. 182(3): 243-252.
    • (1996) J. Theor. Biol , vol.182 , Issue.3 , pp. 243-252
    • Heinrich, R.1    Klipp, E.2
  • 14
    • 84892440324 scopus 로고
    • A linear steady-state treatment of enzymatic chains
    • Heinrich, R., and T. A. Rapoport, 1974 A linear steady-state treatment of enzymatic chains. Control 95: 89-95.
    • (1974) Control , vol.95 , pp. 89-95
    • Heinrich, R.1    Rapoport, T.A.2
  • 17
    • 0028566137 scopus 로고
    • Evolutionary optimization of enzyme kinetic parameters: Effect of constraints
    • Klipp, E., and R. Heinrich, 1994 Evolutionary optimization of enzyme kinetic parameters: effect of constraints. J. Theor. Biol. 171(3): 309-323.
    • (1994) J. Theor. Biol , vol.171 , Issue.3 , pp. 309-323
    • Klipp, E.1    Heinrich, R.2
  • 18
    • 0032729822 scopus 로고    scopus 로고
    • Competition for enzymes in metabolic pathways: Implications for optimal distributions of enzyme concentrations and for the distribution of flux control
    • Klipp, E., and R. Heinrich, 1999 Competition for enzymes in metabolic pathways: implications for optimal distributions of enzyme concentrations and for the distribution of flux control. Biosystems 54(1-2): 1-14.
    • (1999) Biosystems , vol.54 , Issue.1-2 , pp. 1-14
    • Klipp, E.1    Heinrich, R.2
  • 19
    • 58149527756 scopus 로고    scopus 로고
    • Growth-rate-dependent partitioning of RNA polymerases in bacteria
    • Klumpp, S., and T. Hwa, 2008 Growth-rate-dependent partitioning of RNA polymerases in bacteria. Proc. Natl. Acad. Sci. USA 105(51): 20245-20250.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , Issue.51 , pp. 20245-20250
    • Klumpp, S.1    Hwa, T.2
  • 20
    • 72249097352 scopus 로고    scopus 로고
    • Growth rate-dependent global effects on gene expression in bacteria
    • Klumpp, S., Z. Zhang, and T. Hwa, 2009 Growth rate-dependent global effects on gene expression in bacteria. Cell 139(7): 1366-1375.
    • (2009) Cell , vol.139 , Issue.7 , pp. 1366-1375
    • Klumpp, S.1    Zhang, Z.2    Hwa, T.3
  • 21
    • 65249100208 scopus 로고    scopus 로고
    • The cost of gene expression underlies a fitness trade-off in yeast
    • Lang, G. I., A. W. Murray, and D. Botstein, 2009 The cost of gene expression underlies a fitness trade-off in yeast. Proc. Natl. Acad. Sci. USA 106(14): 5755-5760.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , Issue.14 , pp. 5755-5760
    • Lang, G.I.1    Murray, A.W.2    Botstein, D.3
  • 22
    • 0036741640 scopus 로고    scopus 로고
    • Enzyme kinetics, substitutable resources and competition: From biochemistry to frequency-dependent selection in lac
    • Lunzer, M., A. Natarajan, D. E. Dykhuizen, and A. M. Dean, 2002 Enzyme kinetics, substitutable resources and competition: from biochemistry to frequency-dependent selection in lac. Genetics 162: 485-499.
    • (2002) Genetics , vol.162 , pp. 485-499
    • Lunzer, M.1    Natarajan, A.2    Dykhuizen, D.E.3    Dean, A.M.4
  • 23
    • 73149109962 scopus 로고    scopus 로고
    • Shifts in growth strategies reflect tradeoffs in cellular economics
    • Molenaar, D., R. van Berlo, D. de Ridder, and B. Teusink, 2009 Shifts in growth strategies reflect tradeoffs in cellular economics. Mol. Syst. Biol. 5(323): 323.
    • (2009) Mol. Syst. Biol , vol.5 , Issue.323 , pp. 323
    • Molenaar, D.1    van Berlo, R.2    de Ridder, D.3    Teusink, B.4
  • 24
    • 0001389945 scopus 로고
    • Enzyme induction as an all-or-none phenomenon
    • Novick, A., and M. Weiner, 1957 Enzyme induction as an all-or-none phenomenon. Proc. Natl. Acad. Sci. USA 43(7): 553-566.
    • (1957) Proc. Natl. Acad. Sci. USA , vol.43 , Issue.7 , pp. 553-566
    • Novick, A.1    Weiner, M.2
  • 25
    • 84862813307 scopus 로고    scopus 로고
    • The genetic control of growth rate: A systems biology study in yeast
    • Pir, P., A. Gutteridge, J. Wu, B. Rash, D. B. Kell et al., 2012 The genetic control of growth rate: a systems biology study in yeast. BMC Syst. Biol. 6: 4.
    • (2012) BMC Syst. Biol , vol.6 , pp. 4
    • Pir, P.1    Gutteridge, A.2    Wu, J.3    Rash, B.4    Kell, D.B.5
  • 26
    • 77953115788 scopus 로고    scopus 로고
    • Cost of un-needed proteins in E. coli is reduced after several generations in exponential growth
    • Shachrai, I., A. Zaslaver, U. Alon, and E. Dekel, 2010 Cost of un-needed proteins in E. coli is reduced after several generations in exponential growth. Mol. Cell 38(5): 758-767.
    • (2010) Mol. Cell , vol.38 , Issue.5 , pp. 758-767
    • Shachrai, I.1    Zaslaver, A.2    Alon, U.3    Dekel, E.4
  • 27
    • 0028825813 scopus 로고
    • Protein burden in Zymomonas mobilis: Negative flux and growth control due to overproduction of glycolytic enzymes
    • Snoep, J., L. P. Yomano, H. V. Westerhoff, and L. Ingram, 1995 Protein burden in Zymomonas mobilis: negative flux and growth control due to overproduction of glycolytic enzymes. Microbiology 141(9): 2329-2337.
    • (1995) Microbiology , vol.141 , Issue.9 , pp. 2329-2337
    • Snoep, J.1    Yomano, L.P.2    Westerhoff, H.V.3    Ingram, L.4
  • 28
    • 45149128433 scopus 로고    scopus 로고
    • The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products
    • Stoebel, D. M., A. M. Dean, and D. E. Dykhuizen, 2008 The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics 178: 1653-1660.
    • (2008) Genetics , vol.178 , pp. 1653-1660
    • Stoebel, D.M.1    Dean, A.M.2    Dykhuizen, D.E.3
  • 29
    • 33846015888 scopus 로고    scopus 로고
    • Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model
    • Teusink, B., A. Wiersma, D. Molenaar, C. Francke, W. M. de Vos et al., 2006 Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J. Biol. Chem. 281(52): 40041-40048.
    • (2006) J. Biol. Chem , vol.281 , Issue.52 , pp. 40041-40048
    • Teusink, B.1    Wiersma, A.2    Molenaar, D.3    Francke, C.4    de Vos, W.M.5
  • 30
    • 0028163119 scopus 로고
    • Long-term experimental evolution in Escherichia coli. II. Changes in life-history traits during adaptation to seasonal environment
    • Vasi, F., M. Travisano, and R. E. Lenski, 1994 Long-term experimental evolution in Escherichia coli. II. Changes in life-history traits during adaptation to seasonal environment. Am. Nat. 144 (3): 432-456.
    • (1994) Am. Nat , vol.144 , Issue.3 , pp. 432-456
    • Vasi, F.1    Travisano, M.2    Lenski, R.E.3
  • 31
    • 0027250549 scopus 로고
    • Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes: Expression from reporter genes does not always reflect functional mRNA levels
    • Vind, J., M. A. Sørensen, M. D. Rasmussen, and S. Pedersen, 1993 Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes: expression from reporter genes does not always reflect functional mRNA levels. J. Mol. Biol. 231(5): 678-688.
    • (1993) J. Mol. Biol , vol.231 , Issue.5 , pp. 678-688
    • Vind, J.1    Sørensen, M.A.2    Rasmussen, M.D.3    Pedersen, S.4
  • 32
    • 80052324811 scopus 로고    scopus 로고
    • Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency
    • Wenger, J. W., J. Piotrowski, S. Nagarajan, K. Chiotti, G. Sherlock et al., 2011 Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genet. 7(8): e1002202.
    • (2011) PLoS Genet , vol.7 , Issue.8
    • Wenger, J.W.1    Piotrowski, J.2    Nagarajan, S.3    Chiotti, K.4    Sherlock, G.5
  • 34
    • 73449149110 scopus 로고    scopus 로고
    • Invariant distribution of promoter activities in Escherichia coli
    • Zaslaver, A., S. Kaplan, A. Bren, A. Jinich, A. Mayo et al., 2009 Invariant distribution of promoter activities in Escherichia coli. PLOS Comput. Biol. 5(10): e1000545.
    • (2009) PLOS Comput. Biol , vol.5 , Issue.10
    • Zaslaver, A.1    Kaplan, S.2    Bren, A.3    Jinich, A.4    Mayo, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.